NO08G02160, NO08G02160 (gene) Nannochloropsis oceanica

Overview
NameNO08G02160
Unique NameNO08G02160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2543
Alignment locationchr8:636080..638622 +

Link to JBrowse

Properties
Property NameValue
DescriptionArginine-trna-protein transferase 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:636080..638622 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
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BLAST of NO08G02160 vs. NCBI_GenBank
Match: EWM26728.1 (arginine-trna-protein transferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 312.8 bits (800), Expect = 1.200e-81
Identity = 176/295 (59.66%), Postives = 217/295 (73.56%), Query Frame = 0 
Query:   11 AFACAKLVTVIVMSTLAQAATLLPQCCFVISNGASQALTPATSPASMAMTAPLAYTRVRGRSRGLLRCFLGLSRNGNSGGKPQ---SPPVEE------QDVNGVGSTSTTMRXXEFVVTPHHHGNSHLEGLLNLAGREKEEFAGALVKLEHHMQLEVAEALIFNIRKYTNGGMLPSADGSLPKLRPDQQEVVTEFIPEVMRIMDRLEQQGHHHRDARVALYATEALSYEVSTKNVVKAAPQLARIFKNIDMMVAKHPELKGGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRV 297
            +F    L  ++ +  L Q   L    CFV S G + A + +T  ASM+        R+R   RG +RCFLG   + N+ G+ Q    P V++      QD  G  S + TM    FV+TPH HGN HLE LL+LAGREK +F+ AL +LEHH+QLEVAEALIFNIRK+TNGGMLPSADGS PKL  +Q++VV E+IPEV++IMDRLE+ GHHHRDARV+LYATEALSYEVST ++VKAAP LARIFKNID+M+AK PELKGGAPFII+GMMFLNAP+PVRSV+KAKECFQ+AH++
Sbjct:   14 SFGMVFLHVIMTLCCLVQVHGLHRLGCFVTS-GKTGAPSASTWLASMSGDR----LRMRFYRRGQMRCFLGTEESQNNDGRAQPLARPDVDDNAGGLRQDAGGPSSLA-TMGQRAFVITPHQHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEHGHHHRDARVSLYATEALSYEVSTTSLVKAAPLLARIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQI 302
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BLAST of NO08G02160 vs. NCBI_GenBank
Match: EWM26618.1 (arginine-trna-protein transferase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 65.5 bits (158), Expect = 3.300e-7
Identity = 45/148 (30.41%), Postives = 74/148 (50.00%), Query Frame = 0 
Query:  154 MQLEVAEALIFNIRKYTNGGMLPSADGSLPKLRPDQQEVVTEFIPEVMRIMDRLEQQGHHHRDARVALYATEALSYEVSTKNVVKAA--PQLARIFKNIDMMVAKHPELKGGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRVRSR 300
            ++ + A+A +  +R  TN   +     S  K   + +++   +  E   I+  L  Q    ++AR+ +  TEA +Y  S+K ++KAA         + +D +V++HP    G PFI +G   L AP P+R V KA E F+SA  V  R
Sbjct:  115 LKFKFADASVSLLRSLTNANAVLIDGVSDSK---ENRKLWKTYAFEAYDILKELHAQ--EPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPR 257
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BLAST of NO08G02160 vs. NCBI_GenBank
Match: XP_005854443.1 (hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526] >EKU21909.1 hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 63.9 bits (154), Expect = 9.700e-7
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 0 
Query:  208 EQQGHHHRDARVALYATEALSYEVSTKNVVKAA--PQLARIFKNIDMMVAKHPELKGGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRVRSR 300
            E      ++AR+ +  TEA +Y  S+K ++KAA         + +D +V++HP    G PFI +G   L AP P+R V KA E F+SA  V  R
Sbjct:  164 ELHAQEPQNARIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPR 257
The following BLAST results are available for this feature:
BLAST of NO08G02160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26728.11.200e-8159.66arginine-trna-protein transferase 1 [Nannochlorops... [more]
EWM26618.13.300e-730.41arginine-trna-protein transferase 1-like protein [... [more]
XP_005854443.19.700e-737.23hypothetical protein NGA_0014302 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008820NSK008820Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02160.1NO08G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02160.2NO08G02160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582538gene_3544Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g122gene3845Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02160.1NO08G02160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02160.2NO08G02160.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02160 ID=NO08G02160|Name=NO08G02160|organism=Nannochloropsis oceanica|type=gene|length=2543bp
CTCTCGCCTCAAAGTGCCTCTGCTTTTTTGGAGAGCAAGAATGTGATTAT
GGAGGGTTGTAAAGGAGGGAGCAAGTTGGAAAAGTGCATTAAAGTGACTC
ACGGCTGCAGCACATGGTGTTTTCCGATCATCAAACAGCTTAACAATATG
CTTGGTAAGCAGAAGCCGCGAGCACAAGCTGACGGCGCATGTGTGGTACA
GGAACGGCCAAATGATCTCGAAAGAGACGAGGAAGGAGGACCGAGGAAGA
AGAAGACTTCAAAGTTTTCGGAGATGACGACTTTCAAAGCCTTTGACAAC
ACTCAAAATACTGCGGCCATATTGATTTATCTTCATTCTTCAGCTGATCT
ACGTCCACACTTATGCCTCTCGTTGTCCTACCTTACAGATCTCGTCGGAG
CTGAAGCTTGCAAGTGAGATCAAGCACCCAAAGCGACGCCTTTCAAAAAC
GCACATTCCCATAACATCTCCCGCACGTCTTGTCAGCAAATAATGACTTG
TAGAAGAATAGGACATTCACCAGCATTCGCTTGCGCAAAGCTGGTGACTG
TTATTGTGATGTCCACCTTGGCCCAAGCGGCTACACTGCTTCCCCAGTGC
TGTTTTGTCATAAGCAACGGGGCATCACAGGCGCTAACGCCAGCAACGTC
TCCAGCCTCCATGGCCATGACGGCACCATTGGCATACACGCGCGTACGGG
GTAGGTCTCGGGGGCTCTTGAGATGCTTTTTAGGCCTAAGCAGGAATGGG
AACAGCGGTGGGAAGCCTCAGTCGCCGCCGGTGGAGGAGCAGGACGTGAA
CGGTGTTGGGTCTACAAGCACTACCATGCGCCGACGGGAGTTTGTGGTGA
CGCCGCACCACCACGGTAACAGCCATTTGGAGGGCTTGTTAAATCTGGCA
GGGCGGGAGAAGGAGGAGTTTGCGGGCGCACTGGTGAAGTTAGAGCATCA
CATGCAGCTGGAGGTAGCCGAGGCGCTCATCTTCAACATTCGgtgcgtac
ctttttgggagggcaggaagttcggggagtgttctagtagagggagatat
gttcatggttggcagcgacaagctccaccttatttattggcctttatatc
ctcctatcatcaatgaggtccgtcttctgtttcttagtcctttctctccc
tcccctcccacccactcacagTAAATACACCAACGGTGGGATGCTCCCGT
CTGCGGACGGCTCGCTACCCAAGCTCAGGCCAGATCAGCAGGAGGTAGTG
ACAGAATTTATTCCTGAGGTGATGCGGATCATGGATAGGTTGGAGCAGCA
AGGCCACCACCACCGGGACGCCCGCGTGGCACTCTATGCGACCGAGGCGC
TAAGTTATGAGGTGTCGACTAAGAATGTCGTCAAAGCTGCACgtacgtca
ggggatgacctgagactttgaataaagagcatcgcctgaccgagagcagc
cagttttacccagttgtctgccctatgtatcctttgtgtcgtcggcactt
cctcatcgtcccctttttcagtttctcttgctcacgcttttttttaaatc
ccccctaacctcctgaaagCTCAACTAGCCCGCATCTTCAAGAACATCGA
CATGATGGTGGCCAAACACCCTGAGCTAAAGGGCGGCGCCCCCTTCATCA
TCCAAGGCATGATGTTTCTCAATGCCCCTATACCCGTCCGCAGCGTCAAG
AAGGCCAAAGAGTGTTTCCAGTCCGCGCATAGGGTGCGTTCAAGGAAGGA
AATATCATGACATTTTGACTTGGTTGATGAAAATCCATGCTGCAGTCTGA
CTTGGTTGATTCTAGATTTTTTATTTTTTAACCCCTTCCTCCTTTTCTCC
CTCATTCCCTCCCTCCCTCCTCTCACACAAACAGATCGACGCCACCAGCC
CGCGCAACAACTACTTTTGCGGTGTGACGGCCTATTTAGAAAAAGATTAC
ACAGAAGCTCACACTTACTTTGCGGAATCCCTGCGTCTAGCCCAGGAGGC
GGCCGCGATTGCTAGCGCTGTACGGAAAGGCGTCGCTCTTTCCGGTGATG
GGGGAGGAGAACGAGGAGGAGGATGTGCAGAAGCAGAAAATCCGGCAAAT
AAAGAGATGCCAATGGACGAGTACTTGCATGTGCAATGCCGGTTGGGCAT
GGACCTGGCTAGCAGTCGGATCAAGTAGAAGAAGATGTGATGATGGCGGG
GTTTATTTCTTTGTAAATATTATAGCGCGGGATGCGAAACCAGAGAGGGT
GAATGAAGAAGTGAGTGAGCGTAAATAAGTGAATGACATGACTAGGATAG
TCACCGGGTGCTGGTGTCTGTATTGTAGGCCCCCCCCCCTCCTCCCTTGC
TTGTCCTGTTGCAAATTTGATGTCTCGGGAGACAAGAGCAAACAAATAAA
GATAGGAGGGACGGAATGAGGAAGGGGGATTGCTTCGACGCCTTATTTGA
GTCACCTTTGGCTGTTGTAAAAAGGAGAGCACATGGAGTGTAAAAGAAGA
TCAACACTCAATAAAGAAAGCTTCCAAGAAATTAAAACGACGC
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protein sequence of NO08G02160.1

>NO08G02160.1-protein ID=NO08G02160.1-protein|Name=NO08G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MTCRRIGHSPAFACAKLVTVIVMSTLAQAATLLPQCCFVISNGASQALTP
ATSPASMAMTAPLAYTRVRGRSRGLLRCFLGLSRNGNSGGKPQSPPVEEQ
DVNGVGSTSTTMRRREFVVTPHHHGNSHLEGLLNLAGREKEEFAGALVKL
EHHMQLEVAEALIFNIRKYTNGGMLPSADGSLPKLRPDQQEVVTEFIPEV
MRIMDRLEQQGHHHRDARVALYATEALSYEVSTKNVVKAAPQLARIFKNI
DMMVAKHPELKGGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRIDATS
PRNNYFCGVTAYLEKDYTEAHTYFAESLRLAQEAAAIASAVRKGVALSGD
GGGERGGGCAEAENPANKEMPMDEYLHVQCRLGMDLASSRIK*
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protein sequence of NO08G02160.2

>NO08G02160.2-protein ID=NO08G02160.2-protein|Name=NO08G02160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MTCRRIGHSPAFACAKLVTVIVMSTLAQAATLLPQCCFVISNGASQALTP
ATSPASMAMTAPLAYTRVRGRSRGLLRCFLGLSRNGNSGGKPQSPPVEEQ
DVNGVGSTSTTMRRREFVVTPHHHGNSHLEGLLNLAGREKEEFAGALVKL
EHHMQLEVAEALIFNIRKYTNGGMLPSADGSLPKLRPDQQEVVTEFIPEV
MRIMDRLEQQGHHHRDARVALYATEALSYEVSTKNVVKAAPQLARIFKNI
DMMVAKHPELKGGAPFIIQGMMFLNAPIPVRSVKKAKECFQSAHRVRSRK
EIS*
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Synonyms
Publications