NO08G02140, NO08G02140 (gene) Nannochloropsis oceanica

Overview
NameNO08G02140
Unique NameNO08G02140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1292
Alignment locationchr8:629782..631073 +

Link to JBrowse

Properties
Property NameValue
DescriptionRab family gtpase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:629782..631073 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001806Small_GTPase
Homology
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: EWM26593.1 (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 396.0 bits (1016), Expect = 7.200e-107
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204
            MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTE AKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLT STAVGGPGASSGCC
Sbjct:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTETAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTASTAVGGPGASSGCC 203
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: CBJ30228.1 (Rab1B, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 343.2 bits (879), Expect = 5.500e-91
Identity = 172/203 (84.73%), Postives = 184/203 (90.64%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+ KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD+ESFNNVKQWLHEI+RYA ENVNKLLVGNKSDLE KR V+TE AK FAD+LGI FLETSAKN++NVEKAF+ MASQIK+RMK+QP G   GGT+LT ST V G G+  GCC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDSKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKSRMKSQPTGAPRGGTRLTASTQVSGAGSGGGCC 203
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_024572653.1 (ras-like gtp-binding protein ypt1 [Plasmopara halstedii] >CEG36284.1 ras-like gtp-binding protein ypt1 [Plasmopara halstedii])

HSP 1 Score: 331.3 bits (848), Expect = 2.200e-87
Identity = 171/202 (84.65%), Postives = 178/202 (88.12%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGC 203
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL  KRVVST+AAKEFA+SLGI FLETSAKN+ NVEKAF+ MA+QIK RM   PV PK  G KLTP   V   G S  C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPK-AGVKLTPGQQVSSNGGSKCC 201
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_002906462.1 (Rab1 family GTPase (PiYpt1) [Phytophthora infestans T30-4] >XP_008909645.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica INRA-310] >XP_008909646.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica INRA-310] >XP_009515509.1 hypothetical protein PHYSODRAFT_309136 [Phytophthora sojae] >Q01890.1 RecName: Full=Ras-like GTP-binding protein YPT1 >AAB40355.1 ras related protein PiYpt1 [Phytophthora infestans] >EEY65863.1 Rab1 family GTPase (PiYpt1) [Phytophthora infestans T30-4] >EGZ28234.1 hypothetical protein PHYSODRAFT_309136 [Phytophthora sojae] >ETI40516.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica P1569] >ETI40517.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica P1569] >ETK80617.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica] >ETK80618.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica] >ETL34040.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica] >ETL34041.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica] >ETL87316.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica] >ETL87317.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica] >ETM40542.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica] >ETM40543.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica] >ETN05175.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica INRA-310] >ETN05176.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica INRA-310] >ETO69249.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica P1976] >ETO69250.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica P1976] >ETP10292.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica CJ01A1] >ETP10293.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica CJ01A1] >ETP38434.1 Ras-like GTP-binding protein YPT1 [Phytophthora parasitica P10297] >ETP38435.1 Ras-like GTP-binding protein YPT1, variant [Phytophthora parasitica P10297] >KUF84112.1 Ras GTP-binding protein YPT1 [Phytophthora nicotianae])

HSP 1 Score: 330.5 bits (846), Expect = 3.700e-87
Identity = 171/202 (84.65%), Postives = 178/202 (88.12%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGC 203
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL  KRVVST+AAKEFA+SLGI FLETSAKN+ NVEKAF+ MA+QIK RM   PV PK  G KLTP   V   G S  C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPK-AGVKLTPGQQVPSNGGSKCC 201
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: OEU23715.1 (GTP-binding protein yptV1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 329.7 bits (844), Expect = 6.300e-87
Identity = 168/187 (89.84%), Postives = 174/187 (93.05%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKL 188
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA+ENVNKLLVGNKSDL  KRVVSTE  KEFADSLGI FLETSAK STNVE+AFLTMASQIKARMKTQP   + G + L
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYAAENVNKLLVGNKSDLTGKRVVSTEQGKEFADSLGIEFLETSAKTSTNVEQAFLTMASQIKARMKTQPTAAQGGKSVL 187
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_008610233.1 (Ras-like GTP-binding protein YPT1 [Saprolegnia diclina VS20] >XP_012206212.1 Ras-like GTP-binding protein YPT1 [Saprolegnia parasitica CBS 223.65] >EQC36127.1 Ras-like GTP-binding protein YPT1 [Saprolegnia diclina VS20] >KDO23101.1 Ras-like GTP-binding protein YPT1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 322.4 bits (825), Expect = 1.000e-84
Identity = 168/203 (82.76%), Postives = 177/203 (87.19%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL  KRVVST+AAK+FADSLGI FLETSAKN+ NVEKAF+ MA+QIK RM + P+  K     L P   V   G S GCC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKDFADSLGIEFLETSAKNAANVEKAFMMMAAQIKKRMASAPMQSKP-AISLQPGQNVS--GKSGGCC 200
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_009832367.1 (Ras-like GTP-binding protein YPT1 [Aphanomyces astaci] >ETV78030.1 Ras-like GTP-binding protein YPT1 [Aphanomyces astaci])

HSP 1 Score: 322.0 bits (824), Expect = 1.300e-84
Identity = 169/203 (83.25%), Postives = 176/203 (86.70%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL  KRVVST+AAKEFA+SLGI FLETSAKN+ NVEKAF+ MA+QIK RM   PV  K     L P   VG    S GCC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVVSKP-AISLGPGKDVG--SKSGGCC 200
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: OQR87586.1 (Rab1 family GTPase (PiYpt1) [Achlya hypogyna])

HSP 1 Score: 322.0 bits (824), Expect = 1.300e-84
Identity = 170/204 (83.33%), Postives = 177/204 (86.76%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQP-VGPKTGGTKLTPSTAVGGPGASSGCC 204
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL  KRVVST+AAK+FADSLGI FLETSAKN+ NVEKAF+ MA+QIK RM   P V PK     L P   V   G S GCC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKDFADSLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPSVNPK-APISLQPGQNVS--GKSGGCC 201
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: GAX13096.1 (Ras-related protein Rab-1A [Fistulifera solaris] >GAX09278.1 Ras-related protein Rab-1A [Fistulifera solaris])

HSP 1 Score: 320.9 bits (821), Expect = 2.900e-84
Identity = 167/203 (82.27%), Postives = 176/203 (86.70%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI+L+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD ESF+NVKQWLHEI+RYA+ENVNKLLVGNKSDL  KRVVSTE  KEFADSLGI FLETSAK STNVE+AFLTMASQIKARMKTQP        K + +        + GCC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDAESFSNVKQWLHEIDRYAAENVNKLLVGNKSDLTAKRVVSTEQGKEFADSLGIEFLETSAKTSTNVEQAFLTMASQIKARMKTQPT---AASNKSSVNLNTKQVKQNQGCC 200
[Close]
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_002949370.1 (RabD/Rab1 [Volvox carteri f. nagariensis] >P31584.1 RecName: Full=GTP-binding protein yptV1 >AAA34255.1 small G protein [Volvox carteri f. nagariensis] >EFJ49389.1 RabD/Rab1 [Volvox carteri f. nagariensis])

HSP 1 Score: 320.5 bits (820), Expect = 3.800e-84
Identity = 163/203 (80.30%), Postives = 177/203 (87.19%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204
            MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+EL+GK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EI+RYASENVNKLLVGNKSDL  K+VV  +AAK FAD +GI FLETSAKN+TNVE+AF+TMA++IK RM +QPV PK GG  + P+        SS CC
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGGPVVRPTEGKPINNKSSSCC 203
The following BLAST results are available for this feature:
BLAST of NO08G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26593.17.200e-10799.01rab family gtpase [Nannochloropsis gaditana][more]
CBJ30228.15.500e-9184.73Rab1B, RAB family GTPase [Ectocarpus siliculosus][more]
XP_024572653.12.200e-8784.65ras-like gtp-binding protein ypt1 [Plasmopara hals... [more]
XP_002906462.13.700e-8784.65Rab1 family GTPase (PiYpt1) [Phytophthora infestan... [more]
OEU23715.16.300e-8789.84GTP-binding protein yptV1 [Fragilariopsis cylindru... [more]
XP_008610233.11.000e-8482.76Ras-like GTP-binding protein YPT1 [Saprolegnia dic... [more]
XP_009832367.11.300e-8483.25Ras-like GTP-binding protein YPT1 [Aphanomyces ast... [more]
OQR87586.11.300e-8483.33Rab1 family GTPase (PiYpt1) [Achlya hypogyna][more]
GAX13096.12.900e-8482.27Ras-related protein Rab-1A [Fistulifera solaris] >... [more]
XP_002949370.13.800e-8480.30RabD/Rab1 [Volvox carteri f. nagariensis] >P31584.... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008822NSK008822Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02140.1NO08G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582530gene_3542Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Rab1Bgene3847Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02140.1NO08G02140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02140 ID=NO08G02140|Name=NO08G02140|organism=Nannochloropsis oceanica|type=gene|length=1292bp
ATGAACGCGGAATAgtaagtgcattgcttgacccctacttcttcccgccc
gttcttcgagacacctactcatcgccccctttttcttttctcattacagC
GACTATCTCTTCAAGCTCCTGCTGATTGGAGACTCAGGTGTAGGAAAGTC
CTGTTTGCTGTTGCGCTTTGCGGACGACACATACACAGAAAGCTACATTT
CCACCATCGGTGTCGATTTCgtgagtgcggggaaggggttgggtgtttgg
ggtggatggggtaggacaagcttgttcaaattgttgacatagcatgctcc
ataagatgcttcgtgaagacgattgaagtgtttgcctggccacaaccggc
ttgcctcggttttatgtatcggggtggatcatgtgccgttgtgcttcaag
ctcttcgtcacaccttctttctcatgcctttgtatctctccacctttact
ctttttgcagAAAATCCGCACCATTGAGCTGGAGGGGAAGACTATTAAGT
TGCAGATTgtacgtccaaggggggttgggggtgggaggtctgaaaaggga
gaagggagatttggaaggaagtgtgtttgtttaatatacgatgatttgtc
tccatgcgcttactttaaataaatcttatcttcaaaatcataagctgcac
atagtaacccctcttactttctcttaccctctcctgcactcattgctcct
cccttttctcttactcctgctttttaatcagTGGGATACGGCCGGGCAGG
AGCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCATC
ATCGTGGTCTACGATGTGACTGACCAGgtaatatacaaatataaaattta
aagaagattagacaaagaagcgtgcagttttgtgtggtactggtgcttac
atctattgtctccctgcctccatccttcccccctttcccccccatgcgcc
tgtgcgtagGAGTCATTCAACAACGTGAAGCAGTGGCTCCACGAGATTAA
TCGCTACGCCTCCGAGAATGTCAACAAGCTCCTCGTCGGCAACAAGAGCG
ATCTGGAACCCAAGCGCGTGGTCTCCACGGAAGCCGCCAAGGAATTTGCT
GACTCCTTAGGGATCGCCTTCCTTGAGACCTCCGCCAAAAACTCAACCAA
TGTCGAAAAGGCCTTCCTGACCATGGCCTCTCAAATCAAAGCACGGATGA
AGACCCAACCGGTGGGCCCCAAAACGGGGGGGACAAAGCTGACGCCCTCC
ACAGCGGTGGGCGGGCCGGGTGCGTCGTCGGGGTGCTGCTAG
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protein sequence of NO08G02140.1

>NO08G02140.1-protein ID=NO08G02140.1-protein|Name=NO08G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI
ELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK
QWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLET
SAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASS
GCC*
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Synonyms
Publications