NO08G02100, NO08G02100 (gene) Nannochloropsis oceanica

Overview
NameNO08G02100
Unique NameNO08G02100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1813
Alignment locationchr8:622292..624104 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosome biogenesis gtp-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:622292..624104 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR006073GTP_binding_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO08G02100 vs. NCBI_GenBank
Match: EWM26652.1 (ribosome biogenesis gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 639.0 bits (1647), Expect = 1.200e-179
Identity = 358/503 (71.17%), Postives = 399/503 (79.32%), Query Frame = 0
Query:    6 SQLDHPRRARRRPRAPSCSTLVLSAIMLLHRSAVAFLTQTPFTSSKILRLRSVLPGNTASLTTLGAGGRKRGEILKPEYGLRPDEEGVSISRHNINWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPE---IDEGEAALAAAXXXXXXXXXXXXXXXXXXXXXXEMTKEEGEREVGLSLGGGEEVGELGLGGGAVQELDP---VGEAYEEAFEDRKQGPGEGESPKVGVGQFEGW 503
            +Q  H RR +   R P  S   ++ +ML +R + AF+ + P  ++K+    + L   TA+ T LGAGGRK GE+ +P +G RPDEE VS+SRH INWYPGHIAKAERELQDFLKLVDVV+EARDARIPT+TTHPLVRQW+GRRPLIVAMTRKDMAP+ A+KEW DFYV+SARAA R+GQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGR+LAKSKNMPGVTKRISWVRLGAAAMG SRKE+ELELLDSPGIIPAKQVDQ TAFKLAVCNDIGQASYDVQVVAGELINML RVH  RPGYVDL RL+QRYQLDP  L+GEE+LHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLE+PPE   ++E + A+A      XXXXXXXXXXX           E  +R+  L +              A +E D    + E      E R+Q PGEGESPKVGVGQFEGW
Sbjct:    8 NQQYHLRRFKGFTR-PIYSAAYITIMMLFYRFSGAFINKVPICTTKLKNRPAAL--CTAAFTALGAGGRKSGEVQEPYFGFRPDEEDVSVSRHVINWYPGHIAKAERELQDFLKLVDVVVEARDARIPTATTHPLVRQWVGRRPLIVAMTRKDMAPSAAIKEWSDFYVQSARAAHRIGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRRLAKSKNMPGVTKRISWVRLGAAAMGSSRKEEELELLDSPGIIPAKQVDQATAFKLAVCNDIGQASYDVQVVAGELINMLRRVHARRPGYVDLRRLEQRYQLDPCTLSGEEYLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEIPPEMVDLEENKWAMAGEEIREXXXXXXXXXXXLI---------ERMDRKEILPI------------EAAPRERDTESNIEEKQGSERESRQQRPGEGESPKVGVGQFEGW 486          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: CBJ27601.1 (PYlqF, plastid YlqF/RbgA-like GTPase [Ectocarpus siliculosus])

HSP 1 Score: 358.6 bits (919), Expect = 3.100e-95
Identity = 204/432 (47.22%), Postives = 262/432 (60.65%), Query Frame = 0
Query:   85 GLRPDEEGVSI-----------SRHNINWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSA--RAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPEIDEGEAALAAAXXXXXXXXXXXXXXXXXXXXXXEMTKEEGEREVGLSLGGGEEVGELGLGGGAVQELDPVGEAYEEAFEDRKQGPGEGESPK-VGVGQFEGW 503
            G R  E+G +I            +H INWYPGHIAKAER+LQD+L +VDVV+E RD RIP +TTH LV  W+G+RPLIV + R D A   A+++W  + V     RA +R G   VPV FVDS++G  +H +K  ALKAG+ VN+RR R G+ PRS+RVAVIG+PNVGKSA+IN+LIG+K+AKS N PGVTK+++WVRLG      ++ E  LELLDSPGIIPA+Q DQN A KLA+CNDIGQASYD QVVA ++I+ L       PGYV L  +  RY +DP   +GEE+LH +A K+Y G   SAAD+L+ DFRKGH G ++LE PP  +     L                              E     G   G   +     +GGG ++E  P G   +E  E    G    E+ + VG G+FEGW
Sbjct:  145 GWRDKEDGPAIDPFDEGKMNAQGQHVINWYPGHIAKAERQLQDYLNMVDVVVEVRDCRIPAATTHQLVPSWVGKRPLIVVLNRVDTASPTAVEQWKKYLVAEGGLRADNRGG--NVPVFFVDSKRGRGVHEIKKAALKAGSRVNDRRVRRGMNPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNKPGVTKKMNWVRLGGK---DTKPEQNLELLDSPGIIPARQEDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVATRYGIDPRRHSGEEYLHLVAQKMYFGEKNSAADKLLGDFRKGHLGSLSLEAPPRANAAHNRLPLKPGL------------------------EAGGASGAGAGTSRDAAGRPMGGGNMRE--PGGGVEDEEVE---FGAAAKEAREFVGSGEFEGW 542          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: CEM00614.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 303.9 bits (777), Expect = 9.200e-79
Identity = 161/324 (49.69%), Postives = 217/324 (66.98%), Query Frame = 0
Query:   97 RHNINWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQ----------PRVPVVFVDSRQ-GTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDP--W-----ILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPEI 403
            R  INWYPGHIAKA+R+L ++++LVDVVIE RDARIP +T HP+V  W+G RP I+ + R D+    A+++W  +   SA   SR+            P VPVV V++R+ G  I R++   +K G AVN +R R GL PR++R  VIGYPNVGKSA+IN+LIGRK  KS NMPGVT++ISWVRL      G   E ++ELLD+PGIIPA Q DQ+ A++LA+CNDI QA+YDV      L++ L +  + RP YV +  L++RY +DP  W       TGE +++ LA K + G++ SAA RL+SDF+KG  G VTLE+PP +
Sbjct:  113 RKKINWYPGHIAKAQRQLLEYIRLVDVVIEVRDARIPLATGHPMVPLWVGNRPRIIVLNRCDLVAKEALQDWERYLKVSAARDSRIHNSTNGGGASPLPAVPVVPVNAREGGRGIPRIQKALVKVGEAVNAKRERKGLRPRAVRALVIGYPNVGKSALINRLIGRKKTKSYNMPGVTRQISWVRLRDRETTGP-VEKQVELLDTPGIIPANQEDQSAAWRLAMCNDISQAAYDVHEAGVALVDELLQAWKRRPSYVPVENLRRRYGVDPHYWGTDSANATGEFYMNQLAFKCFSGDINSAAGRLLSDFQKGRLGKVTLEIPPPL 435          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: XP_005718199.1 (unnamed protein product [Chondrus crispus] >CDF38314.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 292.7 bits (748), Expect = 2.100e-75
Identity = 151/307 (49.19%), Postives = 200/307 (65.15%), Query Frame = 0
Query:  100 INWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPEIDEGE 407
            I WYPGHIAKAER L++ +K+VDVV+E RD RIP +T HP V +WIG R  I+AM R D+AP  A  +W    V+              V F++++QG  +  LK +A+ AG+ VNE+R R GLLPR +R  VIGYPNVGKSA+IN+L+GRK AKS N PGVT+   WVR+           D +ELLD PGIIPAK   Q +A +LA+C+DIGQA+YD QVVAG L+  L RV E   GY ++  L++R+++    ++GEEF+   A +LY+GN+   A RL+++FR G  GPV LE P    E E
Sbjct:   93 IQWYPGHIAKAERTLKECIKMVDVVVEVRDCRIPLATAHPDVERWIGNRTRILAMNRADLAPEVARAQWRKHLVEQGE----------KVRFINAKQGRGVKELKKLAIDAGSFVNEKRTRKGLLPRPVRCLVIGYPNVGKSALINRLVGRKAAKSANKPGVTRNYQWVRI----------SDTIELLDMPGIIPAKLERQESAVRLAICDDIGQAAYDAQVVAGLLVEELKRVCEEYDGYFEMRTLEERFKVSADGVSGEEFVALAAERLYQGNIERTAVRLLTEFRAGILGPVALEKPEMGGEAE 379          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: OSX76711.1 (hypothetical protein BU14_0178s0027, partial [Porphyra umbilicalis])

HSP 1 Score: 280.0 bits (715), Expect = 1.400e-71
Identity = 150/323 (46.44%), Postives = 197/323 (60.99%), Query Frame = 0
Query:  100 INWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASR-----------------------MGQPRV--PVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLE 398
            I WYPGHIAKAEREL+  L+LVDVV+E RD RIP +T HP V  W+G +  ++ M R D  P  A   W   +V +                              G  RV  P  F++++ G  +  ++  AL AGA+VN RRA  GL PR +RV VIGYPNVGKSA+IN+L+GR+  +S N PGVT+++ WVRL           D+LELLD PGIIPAK V Q TA +LA+C+DIG A+YD QV+A  L+  L  V  + PGYVDL  + +RY++     TGE +LHA A +LY+G+L+  A RL++DFR GH GP+ LE
Sbjct:   27 IQWYPGHIAKAERELRATLRLVDVVVEVRDCRIPAATAHPDVGDWVGGKGRVLVMNRADAVPDVARAAWRRHFVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXHPTGAARVVDPPRFINAKSGDGVRGVRAAALAAGASVNARRAGRGLRPRPVRVVVIGYPNVGKSALINRLVGRRAVRSANTPGVTRQLQWVRLA----------DDLELLDMPGIIPAKLVSQATAVRLALCDDIGTAAYDDQVMAAALVEELLAVAAAHPGYVDLGAVARRYKVPVGGHTGEGYLHAAADRLYQGDLHRTAVRLLNDFRGGHLGPIALE 339          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: WP_073634354.1 (ribosome biogenesis GTPase YlqF [Scytonema sp. HK-05] >OKH55141.1 ribosome biogenesis GTPase YlqF [Scytonema sp. HK-05] >BAY47689.1 ribosome biogenesis GTP-binding protein YlqF [Scytonema sp. HK-05])

HSP 1 Score: 272.7 bits (696), Expect = 2.300e-69
Identity = 136/302 (45.03%), Postives = 196/302 (64.90%), Query Frame = 0
Query:  100 INWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPE 402
            I WYPGHIAKAE+ L++ LK+VDVV+E RDARIP +T HP + +W+G +  ++ + R D+      + W  ++           Q  VP  F +++QG  +  +   A  AG A+NERR   G+LPR++R  VIG+PNVGKSA+IN+L+GR++ +S   PGVT+++ WVR+           +ELELLD+PG+IPAK  +Q  A KLA+C+DIG+ASYD Q VA  L++++     + P ++    L+ RY LDP  LTGE +LHALA   Y+G++   A  L++DFRKG  GP+ LE+PPE
Sbjct:   12 IQWYPGHIAKAEKNLKEHLKVVDVVLEVRDARIPLATHHPKMSEWVGSKTRVLVVNRLDIILPQVRQVWTQWF---------KSQGEVP-YFTNAQQGQGVAAVSKAAQAAGVAINERRKSRGMLPRAVRAVVIGFPNVGKSALINRLLGRRVVESAARPGVTRQLRWVRI----------SEELELLDAPGVIPAKLENQEAALKLAICDDIGEASYDNQKVAAALVDIIKDGQTNDPDFLPEHPLRSRYTLDPTPLTGEAYLHALAEYRYKGDVEKTARTLLTDFRKGSLGPIPLELPPE 293          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: WP_096622146.1 (ribosome biogenesis GTPase YlqF [Calothrix sp. NIES-3974] >BAZ05791.1 ribosome biogenesis GTP-binding protein YlqF [Calothrix sp. NIES-3974])

HSP 1 Score: 272.7 bits (696), Expect = 2.300e-69
Identity = 135/300 (45.00%), Postives = 197/300 (65.67%), Query Frame = 0
Query:  100 INWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVP 400
            I WYPGHIAKAE+ LQ+ LK VDVV+E RDARIP +T HP V +W+G +P I+ + R DM      + W  ++              VP  F +++QG  ++ +   A +AG ++NERR   G+LPR IR  VIG+PNVGKSA+IN+L+ R++ +S   PGVT+++ WVR+           D+L+LLD+PG+IPAK  DQ  A KLA+C+DIG+ASYD Q++A  L++++  +  + P Y+    L+ RY+L+P  LTG+E+LHALA   Y G++  AA +L++D+RKG  G + LE+P
Sbjct:   12 IQWYPGHIAKAEKALQENLKKVDVVLEVRDARIPITTHHPHVPEWVGNKPRILVINRFDMVLPVVRQAWEKWF---------QSHDEVP-YFTNAQQGQGVNAVAKAAQEAGVSLNERRKSRGMLPRPIRAVVIGFPNVGKSALINRLLNRRVVESAARPGVTRQLRWVRI----------SDQLDLLDAPGVIPAKLEDQEAALKLAICDDIGEASYDKQLIAAGLVDIITYLEATNPEYLPKQPLRSRYELEPGNLTGDEYLHALADHKYNGDVERAARQLLTDYRKGMLGSIPLELP 291          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: XP_009037607.1 (hypothetical protein AURANDRAFT_27328 [Aureococcus anophagefferens] >EGB07609.1 hypothetical protein AURANDRAFT_27328 [Aureococcus anophagefferens])

HSP 1 Score: 271.6 bits (693), Expect = 5.100e-69
Identity = 151/331 (45.62%), Postives = 206/331 (62.24%), Query Frame = 0
Query:   71 AGGRKRGEILKPEYGLRPDEEGVSISRHNINWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQG--TDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVP 400
            A G+ +G+  K +      E  V+ +   INWYPGHIA+AEREL+D+LK VDVVIEARDARI  +T HP V +WIG RP +V  T  D+APA  +++W +   +            VPV FVD+++G    +  ++    KAG  VNE+RA+ G++PR+ RVAVIGYPNVGKSA+INKL GRK AKS+N  GVT+ ++WVR   +  G   K    ELLDSPGIIPAKQ++Q  A +LA+C DIG ASYD ++VA  L+  L    + R      + L  +Y +DP +   + ++  LA   Y G+  +AA  +++DFR G  G V LE P
Sbjct:   26 AKGKAKGKNRKVKEETPEHERSVAGA---INWYPGHIARAERELRDYLKRVDVVIEARDARIGATTAHPDVSEWIGARPRVVVFTFADLAPANVVRDWKEELSRD-----------VPVFFVDAKRGGAKALQGIRNELTKAGRVVNEKRAKKGIMPRAARVAVIGYPNVGKSALINKLAGRKAAKSENKAGVTRSLNWVRSKPSTQG---KGLPFELLDSPGIIPAKQLNQRMAARLAICGDIGDASYDTRLVAEALVEELTTRRDERYARDGGASLLSKYGVDPDVFAPDVYVDELADLRYEGDAGTAAMAILTDFRAGRLGKVALEGP 339          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: WP_087541765.1 (ribosome biogenesis GTPase YlqF [Nostocales cyanobacterium HT-58-2] >ARV60460.1 ribosome biogenesis GTPase YlqF [Nostocales cyanobacterium HT-58-2])

HSP 1 Score: 271.6 bits (693), Expect = 5.100e-69
Identity = 136/302 (45.03%), Postives = 194/302 (64.24%), Query Frame = 0
Query:  100 INWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPE 402
            I WYPGHIAKAE+ L++ LKLVDVV+E RDARIP +T HP + +W+G +  ++ + R DM      + W +++           Q  VP  F +++QG  +  +   A  AG A+NERR   G+LPR +R  VIG+PNVGKSA+IN+L+GR++ +S   PGVT+++ WVR+           DELELLD+PG+IPAK  DQ  A KLA+C+DIG+ASYD Q+VA  L+++L  +  +    +    L+ RY+LDP   TGE +L ALA   Y+G++   A  +++DFR+G  G V LE+PPE
Sbjct:   12 IQWYPGHIAKAEKNLKENLKLVDVVLEVRDARIPLATHHPRISEWVGSKTRVLVLNRVDMILPQVRQVWTEWF---------KSQGEVP-YFTNAQQGQGVTAISKAAQAAGVAINERRKSRGMLPRPVRAVVIGFPNVGKSALINRLLGRRVVESAARPGVTRQLRWVRI----------SDELELLDAPGVIPAKLEDQEAALKLAICDDIGEASYDNQIVAAVLVDILKDIEANASDLLPKHPLRSRYKLDPTSFTGEAYLFALAEYRYKGDVEKTARAILTDFRQGSLGAVPLELPPE 293          
BLAST of NO08G02100 vs. NCBI_GenBank
Match: WP_038075418.1 (ribosome biogenesis GTPase YlqF [Tolypothrix bouteillei] >KIE11800.1 GTPase [Tolypothrix bouteillei VB521301])

HSP 1 Score: 269.2 bits (687), Expect = 2.500e-68
Identity = 133/304 (43.75%), Postives = 195/304 (64.14%), Query Frame = 0
Query:  100 INWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPLIVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRKLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQNTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRYQLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPPEID 404
            I WYPGHIAKAE+ L++ LKLVDVV+E RDARIP +T HP + +WIG +P ++ + R DM    A + W +++ +         Q  VP  F +++QG  +  +   A  AG  +NERR   G+LPR +R  VIG+PNVGKSA+IN+L+GR++ +S   PGVT+++ WVR+           D++ELLDSPG+IP++  +Q    KLA+C+DIG ASYD Q+V+  L+++L  +  + P  +    L  RY LDP   TGE +L ALA   Y+G++   A +L++DFRKG  G + LE+PP+ +
Sbjct:   12 IQWYPGHIAKAEKALKEHLKLVDVVLEVRDARIPLATHHPQINEWIGSKPRVLVLNRVDMLLPQARQTWIEWFKQ---------QGEVP-YFTNAQQGQGVAAVSKAAQAAGVVINERRKNRGMLPRPVRAVVIGFPNVGKSALINRLLGRRVVESAARPGVTRQLRWVRI----------SDQIELLDSPGVIPSRLENQGNGVKLAICDDIGDASYDTQLVSAALVDLLKDLEATAPHLLPKQPLYARYTLDPAPFTGEAYLQALAEHRYKGDVERTARQLLTDFRKGLLGEIVLELPPDYE 295          
The following BLAST results are available for this feature:
BLAST of NO08G02100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26652.11.200e-17971.17ribosome biogenesis gtp-binding protein [Nannochlo... [more]
CBJ27601.13.100e-9547.22PYlqF, plastid YlqF/RbgA-like GTPase [Ectocarpus s... [more]
CEM00614.19.200e-7949.69unnamed protein product [Vitrella brassicaformis C... [more]
XP_005718199.12.100e-7549.19unnamed protein product [Chondrus crispus] >CDF383... [more]
OSX76711.11.400e-7146.44hypothetical protein BU14_0178s0027, partial [Porp... [more]
WP_073634354.12.300e-6945.03ribosome biogenesis GTPase YlqF [Scytonema sp. HK-... [more]
WP_096622146.12.300e-6945.00ribosome biogenesis GTPase YlqF [Calothrix sp. NIE... [more]
XP_009037607.15.100e-6945.62hypothetical protein AURANDRAFT_27328 [Aureococcus... [more]
WP_087541765.15.100e-6945.03ribosome biogenesis GTPase YlqF [Nostocales cyanob... [more]
WP_038075418.12.500e-6843.75ribosome biogenesis GTPase YlqF [Tolypothrix boute... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008825NSK008825Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02100.1NO08G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625090gene_3538Nannochloropsis oceanica (N. oceanica CCMP1779)gene
PYlqFgene3850Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02100.1NO08G02100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02100 ID=NO08G02100|Name=NO08G02100|organism=Nannochloropsis oceanica|type=gene|length=1813bp
CAGCGTTGGCCAACGGGGGAGGACCGAACTCAAGCCTCTTTTTGTTTTGG
TCGACCTCCTTTTCCCAAGCGACTGATCTTGGAGAAGCGAGCAAGCCATG
CTCACCAGCACCAGCCAGCTTGACCACCCACGCCGTGCACGCCGTCGTCC
CCGTGCTCCTTCGTGTAGTACTTTGGTGCTGAGCGCAATTATGCTTCTCC
ATAGATCGGCCGTGGCCTTTTTGACACAGgtaggtaggctgtcttgctgt
tttactgctcgttgccctcctatccctccctccttccgacgcgccggaga
agtttgactaaattgcccctgcccctgccttaaaacacagACCCCTTTCA
CGAGCAGCAAGATCTTAAGGCTACGATCTGTGCTGCCGGGCAATACGGCA
TCCTTAACAACCCTTGGCGCTGGCGGGCGAAAGCGCGGCGAGATCCTCAA
GCCCGAGTACGGCCTGAGGCCCGACGAGGAAGGCGTCTCCATCTCCCGGC
ACAACATCAACTGGTACCCCGGCCACATCGCCAAGGCTGAGAGGGAGCTG
CAGGATTTTTTGAAGCTCGTAGATGTGGTGATCGAGGCACGGGATGCCCG
CATCCCTACCTCTACTACTCATCCTTTGGTTCGGCAATGGATTGGCCGAC
GGCCATTAATCGTAGCTATGACCCGCAAAGACATGGCCCCCGCTGGCGCC
ATGAAAGAATGGGGCGACTTTTACGTCAAATCTGCCCGGGCCGCCTCTCG
AATGGGCCAACCGCGCGTCCCTGTGGTGTTTGTCGACTCAAGGCAAGGCA
CAGACATACACCGTCTCAAAATGATTGCGCTGAAGGCAGGCGCCGCGGTC
AATGAGCGGCGGGCCCGCCTTGGCCTCCTGCCACGCAGCATCCGAGTAGC
TGTAATCGGATACCCGAACGTCGGTAAATCTGCGATCATTAATAAGCTGA
TCGGAAGGAAGCTGGCCAAGAGTAAGAATATGCCCGGTGTGACCAAGCGC
ATTTCCTGGGTTCGTTTGGGAGCGGCTGCGATGGGCGGTTCCCGGAAAGA
AGACGAGTTGGAATTGCTAGACTCCCCTGGAATTATTCCCGCGAAGCAAG
TGGACCAAAACACTGCTTTCAAGCTAGCGGTATGCAATGATATTGGACAA
GCGTCTTACGACGTCCAAGTAGTCGCGGGCGAGCTGATAAACATGCTCTG
TCGCGTCCACGAAAGCCGCCCAGGCTACGTAGACCTCTCCAGACTCCAGC
AACGGTACCAACTTGACCCTTGGATTTTAACAGGAGAGGAGTTTTTGCAT
GCATTGGCTGCAAAGCTGTACAGGGGGAATCTGTATTCCGCTGCAGATCG
ACTGATGTCTGATTTTAGGAAAGGGCATTTTGGACCTGTCACCCTTGAGG
TTCCTCCTGAGATAGACGAAGGGGAGGCGGCCTTGGCAGCGGCAGAGATG
GCGGGGAGGGAAGCGAAAGAGGAGGAGCGGAGGAGACGACAGCGGAGAAG
GGAGCTGATGGAAATGACGAAGGAGGAGGGGGAAAGGGAGGTGGGGTTGT
CTTTGGGAGGAGGGGAGGAGGTTGGGGAGTTAGGCTTGGGAGGAGGAGCA
GTGCAGGAATTGGACCCAGTGGGAGAGGCATATGAGGAAGCATTTGAGGA
CAGGAAGCAAGGCCCTGGTGAAGGGGAGAGTCCCAAGGTGGGAGTAGGAC
AGTTTGAAGGGTGGTGAAGAGAAAGAGATAGGCGCAAAATGTCGCGCTTA
AGTAATTAAATAATAATATGTGCAAGAAATTAAATAGAGCACATTACACC
TAAAGCAAATGAA
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protein sequence of NO08G02100.1

>NO08G02100.1-protein ID=NO08G02100.1-protein|Name=NO08G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MLTSTSQLDHPRRARRRPRAPSCSTLVLSAIMLLHRSAVAFLTQTPFTSS
KILRLRSVLPGNTASLTTLGAGGRKRGEILKPEYGLRPDEEGVSISRHNI
NWYPGHIAKAERELQDFLKLVDVVIEARDARIPTSTTHPLVRQWIGRRPL
IVAMTRKDMAPAGAMKEWGDFYVKSARAASRMGQPRVPVVFVDSRQGTDI
HRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGR
KLAKSKNMPGVTKRISWVRLGAAAMGGSRKEDELELLDSPGIIPAKQVDQ
NTAFKLAVCNDIGQASYDVQVVAGELINMLCRVHESRPGYVDLSRLQQRY
QLDPWILTGEEFLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEVPP
EIDEGEAALAAAEMAGREAKEEERRRRQRRRELMEMTKEEGEREVGLSLG
GGEEVGELGLGGGAVQELDPVGEAYEEAFEDRKQGPGEGESPKVGVGQFE
GW*
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Synonyms
Publications