NO08G02050, NO08G02050 (gene) Nannochloropsis oceanica

Overview
NameNO08G02050
Unique NameNO08G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1446
Alignment locationchr8:609399..610844 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosome assembly protein 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:609399..610844 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO08G02050 vs. NCBI_GenBank
Match: EWM26602.1 (ribosome assembly protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 379.8 bits (974), Expect = 1.300e-101
Identity = 207/393 (52.67%), Postives = 258/393 (65.65%), Query Frame = 0
Query:   33 LWGASAQIPRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAW------GQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLDRRAGEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTFSVRAVLEGCGRPVFGAAVVPRGLAKEHVLTERRKEVPIVMTWSTDTCLRFYELGVDNAMMRHVVQHQNFPIYTAAFSPGQGRRLVLGGGMGMPEPH 420
            L G+ A     AH ERVF+LAFD S N WMASAS+A +VK+W+VA++G  P L   L H AEVLRVAW      G+    G       + +SW ATG+AAG VR+Y V++ Q   E     S +   A  T  L TEF HP   QQIYAL W++    E +++  L+TAADDK+++WD+E QS+T  W+F+ + P    E  +   YGG  RNP  +CY+FDA  G LYPGQ  DVVC+ALSDGSVRVLDRR+   VA V+G  G HLTAL L+  E +LLAC G+G+VVA+DTRTFSVRAVL+G GRPVFGAA+VP  L   + +       P+VMTWSTDT LRF++L   N+  RHVV H  FPI T AF PG  R+LVLGGG G+PEPH
Sbjct:   30 LGGSQATALPQAHSERVFDLAFDKS-NRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAA-QAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLET--TELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAP--TTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEG-HLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLT--NCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGH-RQLVLGGGTGVPEPH 412          
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_005856011.1 (hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526] >EKU20348.1 hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 158.7 bits (400), Expect = 4.600e-35
Identity = 93/209 (44.50%), Postives = 124/209 (59.33%), Query Frame = 0
Query:   33 LWGASAQIPRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAW------GQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGG 236
            L G+ A     AH ERVF+LAFD S N WMASAS+A +VK+W+VA++G  P L   L H AEVLRVAW      G+    G       + +SW ATG+AAG VR+Y V++ Q   E     S +   A  T  L TEF HP   QQIYAL W++    E +++  L+TAADDK+++WD+E QS+T  W+F+ + P    E  +   YGG
Sbjct:   31 LGGSQATALPQAHSERVFDLAFDKS-NRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAA-QAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLET--TELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAP--TTEPGNRAAYGG 233          
BLAST of NO08G02050 vs. NCBI_GenBank
Match: CBJ31251.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 134.0 bits (336), Expect = 1.200e-27
Identity = 116/392 (29.59%), Postives = 174/392 (44.39%), Query Frame = 0
Query:   45 HRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAWGQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQ----QIYALQWMDNDI----DERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLD-RRAGEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTFSVRAVLEGCGRPVFGAA---------VVPRGLAKEHVLTERRKEVPIVMTWSTDTCLRFYE----LGVDNAMMRHVVQHQNFPIYTAAFSPGQGRRLVLGGGMG 415
            HR R F+  F  +  D   SASE    ++W+++S   A  L    + K EVLR  W         G   D  S  +ATGSA G VR++ +    G DE              +  +V +  H  E +    Q+Y+  ++ +          A   LLTA+D  V  WD+ET+   +  +  ++               G  RNP  + +VFDA   +  PG  S V+ +ALSDG+VRV D  + GE  A +RGV  +HLT+L  S +  +L +C G G +  +DTRT++ R+VL G  RPV+GAA                                +WS+D  +  ++     G   A +  +   + FP+Y+ + S   GRR  L GG G
Sbjct:   30 HRARTFDFQFHPT-EDAAISASEDGTARVWDLSSGKCAKSLEGH-NKKHEVLRACW------APPGAANDSVS--VATGSADGIVRLWGIRHGDGRDEK------SGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHSI----------GGERNPDDLAFVFDA---KPRPGSGSSVLAVALSDGTVRVGDVLQQGEKAAVLRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLWGHSRPVYGAAFYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSSDETVCAWDTGRATGDATAPLATLSVEEGFPVYSCSVS-ADGRRFALAGGGG 391          
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_002295863.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64580.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 92.0 bits (227), Expect = 5.300e-15
Identity = 119/441 (26.98%), Postives = 183/441 (41.50%), Query Frame = 0
Query:   18 PATKADSRPNTSYPDLWGASAQIPRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAWGQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTK---------------WSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLD----------------------RRAGEAVATV-----RGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTF-----------SVRAVLEG---CGRPVFGAAVVPRGLAKEHVLTERRKEVPIVMTWSTD--TCL-RFYELGVDNAMMRHVVQHQNFPIYTAAF 400
            PA+   S   TS P     + ++    HRE +F  +F + G  ++A+AS+ + V++W V +  +   LS  +  K E LRV W      G+ G+  D +   LA+  A G VR++  S+ Q  D+D+    C   + S       + D   E  QIY++Q++ +         LLLT+A+D V+ W +E    +T                  FE+L P      +    +GG  RNP    YVF+A+       + +D+V  ALSDG+ RV+                        + G+ V ++         G HLTAL        L  C   G VV +  +T            +  AVLEG     RP+FGA     G A E +L          +TW  D   C+   Y +G     +  ++ H N+PIY   F
Sbjct:   93 PASTNSSSSATSTPSR-TKNERLCIGGHRETIFGSSFSSDGK-YLATASQDSTVRIWEVNTNRLVATLSEGMDGKFECLRVGW-MAARDGSVGL-NDGEKYLLASAGADGVVRLW--SACQSEDDDKLEWKC-VGTQSHYEYEQNDNDEEVEPPQIYSMQFIQS--KSAPHLNLLLTSANDAVYIWKIENDVQSTNNDNVPNKRLIQPHLFVQFERLDPNSGAYVNQ---FGGP-RNPLNELYVFEASY-----SECNDLVGAALSDGTCRVVSLANHXXXXXXXXXXXXXXXXXPLQRGQCVLSLPPDYFPEERGGHLTALSWDESGTRLATCIASGRVVLWMIQTVRREDGLSFLHPTCVAVLEGGHDVQRPLFGAKYF--GGANEELL----------LTWGVDGKVCVWDSYSVGGVTNPLCTLISHSNYPIYALDF 503          
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_002184990.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43437.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 79.3 bits (194), Expect = 3.500e-11
Identity = 112/438 (25.57%), Postives = 183/438 (41.78%), Query Frame = 0
Query:   45 HRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKA-EVLRVAWGQHQGKGADGVPKDHQSS--WLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQ--QIYALQWMDN-----DIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQ--------------------------------------------LPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLDRRAGEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVA-------YDTRTFSV-RAVLEG---CGRPVFGAAVVPRGLAKEHVLTERRKEVPIVMTWSTDTCLRFYELGVDNAMMR--HVVQHQ-NFPIYTAAFSPGQGRRLVLGGGMG 415
            H+ER+  L     G  ++A+AS+ + V++W   ST    +L+T   + A E LRV W   Q    + + ++  +    LATG A G VR++       S++  E   C    A+     +  F+  EE    Q+YALQ++D+        E D    LLT++DD V  W++ ++S   K   +                                               P        S V+GG +RNP G+ YVFDA        +++ ++  ALSDG++R+++ R           + SHLT+L        L  C   G+++        Y  R  +  RAV+EG    GRP+FG   V R         +  +E  ++++W  D  L  ++    + + R   V+ H+  +PIY  A    Q   + +GGG G
Sbjct:  452 HKERILGLDLSPCG-QYLATASQDSTVRVW---STDTNQLLATVPHNSAYECLRVVWASPQW-AENNIDRNGCACPYLLATGGADGIVRLF------RSEKPTEWVLC----ATLDHAEMNHFEGEEEADTPQVYALQFIDHWKALPGSKESDTNSFLLTSSDDHVHLWEICSKSEGKKEESDNDSGESGNLRLREVFSMHFGDMHNQAYGVQVGHVTAAGLDIADATTSPIPISSGGDSGVFGG-DRNPRGLVYVFDARY-----CEANGLLGAALSDGTLRLVNGRGVCLSLLQLPGHRSHLTSLAWDRTGECLATCVATGHLITWGVSVDEYANRVHATCRAVMEGGHDKGRPLFGTEFVGR---------DGDEEDDLLISWGVDGRLCLWDSFSTDEIDRPLAVLLHKPEYPIY--AVDLMQDAFIAVGGGTG 857          
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_002508580.1 (predicted protein [Micromonas commoda] >ACO69838.1 predicted protein [Micromonas commoda])

HSP 1 Score: 71.2 bits (173), Expect = 9.600e-9
Identity = 90/311 (28.94%), Postives = 128/311 (41.16%), Query Frame = 0
Query:   41 PRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGI-APILSTTLSHKAEVLRVAWGQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVL--DRRA--GEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTFS-VRAVLEGCGRPVFGAAVVPRG 346
            P  AH  RVF++AF       +ASA E    +LW  A +G           HK EV+RV+W                S  LAT SA G V V+ V ++ G    E   +     + TTA +     HP+   Q+Y   ++    D      +L TAA   +  WDLE  +V +K   E +P E           G     PG   ++F         G + +++  A SDG+VRV   D +A   E VAT+   +G+   A    +   +L +    G VV  D RT + +  V   C  P  G   VP G
Sbjct:   17 PTRAHYGRVFDVAFCPWDESLIASAGEDEAARLWLDAGSGSGVSSYGVCRGHKDEVVRVSW-------------HPTSKILATASADGSVGVWRV-AQPGM---EASATTHDPDSGTTALVDKLEGHPD---QVYGCIFVG---DGDGGGPMLATAAGTDLHLWDLERVTVLSKVGHEPIPVEA----------GSERWEPG---FLFSLA----SDGGARNLLASACSDGAVRVFAHDSKASTAETVATLPVHSGALGCATTFLSGGDVLASMSTDGTVVFTDVRTMTPMTKVTSPC--PTMGCCAVPSG 285          
The following BLAST results are available for this feature:
BLAST of NO08G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM26602.11.300e-10152.67ribosome assembly protein 4 [Nannochloropsis gadit... [more]
XP_005856011.14.600e-3544.50hypothetical protein NGA_2026500, partial [Nannoch... [more]
CBJ31251.11.200e-2729.59conserved unknown protein [Ectocarpus siliculosus][more]
XP_002295863.15.300e-1526.98predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002184990.13.500e-1125.57predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002508580.19.600e-928.94predicted protein [Micromonas commoda] >ACO69838.1... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008831NSK008831Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02050.1NO08G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582493gene_3532Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g110gene3856Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02050.1NO08G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02050 ID=NO08G02050|Name=NO08G02050|organism=Nannochloropsis oceanica|type=gene|length=1446bp
ATGCAAGATGGACAACCCCAGAGGAAAAAAAACACTGGGAAGAATGACGT
TCCCGCTACCAAGGCCGACTCACGGCCCAACACCTCCTATCCTGACTTGT
GGGGTGCTTCGGCGCAAATCCCCAGACATGCGCACCGTGAGCGGGTCTTT
AACCTGGCATTTGACGCTTCTGGGAACGATTGGATGGCCTCGGCCTCAGA
GGCAAATGAAGTGAAGCTTTGGAACGTGGCCAGCACAGGGATCGCGCCGA
TTCTGTCGACAACTCTGTCGCATAAGGCAGAGGTGCTGCGGGTTGCCTGG
GGACAGCATCAGGGGAAGGGCGCCGATGGAGTCCCCAAGGACCATCAATC
TTCATGGCTGGCCACAGGTAGCGCGGCGGGTGGCGTGCGCGTCTATTTTG
TTTCATCAGAGCAAGGAAGCGATGAAGACGAAGAAGGCAATTCTTGCGAA
GCGGCTTCGGCCTCGACCACTGCCACTTTAGTGACGGAATTTGACCACCC
CGAAGAAGGCCAACAAATTTACGCTTTGCAATGGATGGATAATGACATTG
ACGAAAGAGATGCCAAACGCCTCCTATTGACAGCCGCCGATGACAAAGTT
TTTTTCTGGGACTTGGAAACGCAAAGTGTTACAACTAAGTGGTCCTTTGA
GCAGCTGCCTCCCGAGCAAGACAAGGAAGAGAGCAGCAGCACGGTGTACG
GTGGAACCAACCGGAACCCTGGTGGTATGTGTTATGTATTTGACGCCACT
GTTGGTCGTTTATACCCGGGTCAGTCTAGCGATGTAGTGTGTTTGGCTTT
GAGTGATGGGAGCGTTCGTGTTCTCGATCGCCGGGCGGGGGAGGCGGTGG
CAACCGTGCGGGGAGTGAATGGGTCTCACTTGACGGCTTTGTGTTTAAGC
GCGGAGGAGGGGATATTGCTGGCGTGTGAAGGCAAGGGTAATGTTGTTGC
ATACGACACGCGGACATTTTCTGTGCGGGCTGTGTTAGAGGGGTGTGGTC
GTCCGGTATTTGGTGCGGCGGTGGTGCCGCGAGGGTTGGCCAAGGAGCAT
GTCTTGACTGAGAGAAGGAAGGAGGTGCCCATCGTGATGACGTGGTCAAC
TGATACCTGTTTACGTTTTTATGAGTTGGGTGTGGATAACGCGATGATGC
GTCATGTGGTGCAGCACCAGAATTTTCCGATTTATACCGCAGCGTTTAGT
CCGGGGCAAGGGCGAAGGCTGGTATTGGGGGGAGGGATGGGGATGCCAGA
GCCGCATAATTCTCATTCACTCGTGCACAAGGGTGAAAAGAGGAGGGAAG
GAGGGGGAGAAGAAGAAGGAGGAGGAGTGACTTCGTGTTCTCATGGAGCC
GAAGACGAGCACCACCACCATCCTCCTCACCATCACAATAATGCAGGTGA
AACTGTAGTCCCATCATCGCTTTTGTCGTACCAATTTTCAAAATAA
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protein sequence of NO08G02050.1

>NO08G02050.1-protein ID=NO08G02050.1-protein|Name=NO08G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MQDGQPQRKKNTGKNDVPATKADSRPNTSYPDLWGASAQIPRHAHRERVF
NLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAW
GQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCE
AASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKV
FFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDAT
VGRLYPGQSSDVVCLALSDGSVRVLDRRAGEAVATVRGVNGSHLTALCLS
AEEGILLACEGKGNVVAYDTRTFSVRAVLEGCGRPVFGAAVVPRGLAKEH
VLTERRKEVPIVMTWSTDTCLRFYELGVDNAMMRHVVQHQNFPIYTAAFS
PGQGRRLVLGGGMGMPEPHNSHSLVHKGEKRREGGGEEEGGGVTSCSHGA
EDEHHHHPPHHHNNAGETVVPSSLLSYQFSK*
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Synonyms
Publications