NO08G01970, NO08G01970 (gene) Nannochloropsis oceanica

Overview
NameNO08G01970
Unique NameNO08G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1965
Alignment locationchr8:595066..597030 -

Link to JBrowse

Properties
Property NameValue
DescriptionE3 ubiquitin-protein ligase rnf8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:595066..597030 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016874ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G01970 vs. NCBI_GenBank
Match: EWM26742.1 (e3 ubiquitin-protein ligase rnf8 [Nannochloropsis gaditana])

HSP 1 Score: 351.3 bits (900), Expect = 6.500e-93
Identity = 293/659 (44.46%), Postives = 326/659 (49.47%), Query Frame = 0 
Query:    1 MARRSLSQNLPNLVKGGCTVGAVTYQSAAARAYHDEADDASVGGVGRDSTVLTGSXXXXXXXXXXXXXXXQRGALKVAGRSXXXXXXXXXXXXXDRHISVQEVEEASRILFAPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSVEEEDLACKDKG-SISPSTPSIFRVHRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQPEVHAEILRFGMALANNPKIQSAIREELEMHHVHHVQQQEHLEGGXXXXXXXXXXSAEATVVQMESNVRRIF----CQGVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFELLEAMSTEWXXXXXXXXXXXXXXXXKFEEEHLAENVPSNCFVSVGRNMRRKDSLAGEVSDEVLDELLRGDDDDDVIAQRLFAQTPDEQVRRYLRNLDLECVICCEYMVECKAVDCGEGHTFCGECIEQWLGREGGREGGGRCPTCQKPCGTTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHIRRALERQXXXXXXXXXXXXXXXXXXXXFAGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGRAEDAAQPWWKSEVLSTALSVATMLVLLVLFKRGIKIR 655
            MARR LS NLPN VKGGCTVGA TYQS AAR +                      XXXXXX         Q  ALK A  S             D  IS +EVEEASRILFAP+                                                 ++VE++      KG + + S P + R  R P                                         PQPEVHAEILRFG ALA+NP+IQ+AI EEL+MH+    +  E    G          +AE ++ QMES VRR+      +  A                                 SFE+L AMS EW                  E E +AEN+PSN FVSVGR MRRKDSLAGEVSDEVLDELLR +D               +QVRR+LRNLDLECVIC EYMVE  AVDCGEGHTFCGECIE+WL  E    GG RCPTCQKP  +TIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAH+RR +ERQ                    FAG+G                    XXXXXXXXXXXXXXXXXXXXXXXX         AQPWWKSE+LSTALSVATMLVLLVLFKRG K R
Sbjct:    1 MARRGLSHNLPNYVKGGCTVGACTYQSQAARTF----XXXXXXXXXXXXXXXXXXXXXXXXGERAEEVRVQSNALKDANLS--PVATPAPHLSRDCTISAREVEEASRILFAPE----GATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEAGIDEAVEDKQRVNLAKGMAPTQSLPPMLRT-RSP------------------------VSRSLAPLPSTLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTG-----ENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGN--EREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDXXXXXXXXXXXXXXXDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWL--ELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQ-----DREEEETATAATQGPFAGIG---------NLFGLGTRANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR 601
The following BLAST results are available for this feature:
BLAST of NO08G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26742.16.500e-9344.46e3 ubiquitin-protein ligase rnf8 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008835NSK008835Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01970.1NO08G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669487gene_3527Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g104gene3860Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01970.1NO08G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01970 ID=NO08G01970|Name=NO08G01970|organism=Nannochloropsis oceanica|type=gene|length=1965bp
ATGGCGCGTCGTAGCTTGTCGCAAAATTTGCCGAACTTGGTCAAGGGAGG
CTGCACCGTAGGGGCCGTCACTTATCAATCCGCTGCGGCTCGTGCGTACC
ACGACGAAGCAGATGATGCTTCTGTTGGTGGGGTCGGCCGCGACTCGACT
GTTTTGACGGGCAGCAGTACTAGCAACAACTCCTCCGGGCGAGCGGAAGA
AGTGGTATTGCAAAGGGGTGCCTTGAAAGTTGCTGGGAGGTCGGCTACTA
TGGAGCAGGCGTCGTCCTCTTCTTCCTCGCCGGACCGACATATCAGTGTC
CAGGAGGTTGAAGAGGCTTCTCGCATTCTTTTTGCACCCCAAGGCACCGC
TGCCACTGCAGCCGTAGCGCATAGTCACCACCATCACAACCACCATGATA
CTGTGGCCTCGTCGTCGTTTCGGGAGTCGAACGAGTTGTTGTCTGGCATG
TCTGCCCGGGGAGGAGGACGACGAACCGCTGAAACTTCTGATTCTGTGGA
AGAAGAAGACCTAGCCTGCAAGGACAAAGGGAGCATCTCACCGTCGACTC
CATCCATATTCCGTGTACATCGCCAACCCTCCCCTTCTTGCTCGTCTTCC
CCTGCCGTTGCCGCCGCCGCTGCTGCTGCTGCTTCAGCTGCTTCCGCTGT
TGCTGTTACTCCCTCCTCATCTGTCTCTCGCACAACTCTCACACGCTTAC
ACCCCCAGCCGGAAGTCCATGCAGAGATATTACGGTTCGGAATGGCCTTG
GCCAACAACCCCAAAATCCAAAGTGCGATTCGAGAGGAGTTAGAAATGCA
TCATGTGCATCATGTGCAGCAACAGGAGCACCTGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGACTAGATTCAGCGGAGGCAACAGTGGTCCAGATG
GAGTCGAACGTGCGGAGGATTTTCTGTCAAGGAGTGGCGGGAGGAGAGGA
GGAGGAGGAAGAGGAGGAGGTAGGGAGGCAGGAGGGAAGTGGGACCTCGG
GAAGTACTGGCAGCAGCAGTTGCAGCCCTTTGACAGGGTCGTTTGAGTTG
TTAGAGGCAATGAGTACTGAATGGGCTCAAGCCCAGGCACAGCAAGAGGA
TAACGAGGATGGGGAAGAAGGAAAATTCGAAGAGGAACATCTTGCGGAAA
ATGTGCCGTCGAATTGTTTCGTGAGTGTCGGGAGGAATATGCGGAGGAAA
GATAGCTTGGCGGGGGAGGTCTCAGACGAGGTGCTGGACGAGCTGCTGAG
GGGGGATGATGACGACGATGTCATCGCTCAGAGGTTATTCGCCCAGACGC
CAGATGAGCAGGTGAGGCGTTACTTGCGGAATCTGGACCTGGAGTGCGTG
ATATGCTGTGAGTACATGGTGGAGTGCAAAGCGGTGGACTGTGGGGAGGG
GCATACGTTTTGTGGGGAGTGTATTGAACAGTGGTTGGGGAGGGAGGGAG
GCAGGGAGGGAGGGGGAAGGTGTCCCACGTGTCAGAAGCCGTGTGGGACG
ACCATTCCCATGAGGCAGTATGACGCCATGATTGAGAAGTATGTTCGAGC
TTCGAATCTGTGGGATGAGCAGTGCTCATTCTATCGTCGTCGCACGCTGG
CACATATACGCCGGGCGCTCGAGAGGCAGGATCGGGAAGAGGAAGAAGCA
GCAGCAGCAGCCACAGCGGCGACGGGAAGCCAGAACCTGTTTGCGGGTTT
GGGATATCTGCTGTTCGGACTGGGAGGGTCAAGTGGGGCAGGGGCGACGC
GGCGGCGGAGGAGGAACCGTCAGGCAGTTGCAGAGGCTTCGGAGGCTGGT
GGTGGTGGTGGTGTGGCGGGTGTAGGGTCCGCGAGGGGGGAGGGGGGCAG
GGCAGAGGACGCGGCGCAGCCATGGTGGAAGAGTGAGGTGCTGAGCACGG
CCTTGTCGGTGGCGACGATGCTTGTCTTACTGGTATTGTTCAAAAGGGGG
ATCAAAATCCGTTAG
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protein sequence of NO08G01970.1

>NO08G01970.1-protein ID=NO08G01970.1-protein|Name=NO08G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=655bp
MARRSLSQNLPNLVKGGCTVGAVTYQSAAARAYHDEADDASVGGVGRDST
VLTGSSTSNNSSGRAEEVVLQRGALKVAGRSATMEQASSSSSSPDRHISV
QEVEEASRILFAPQGTAATAAVAHSHHHHNHHDTVASSSFRESNELLSGM
SARGGGRRTAETSDSVEEEDLACKDKGSISPSTPSIFRVHRQPSPSCSSS
PAVAAAAAAAASAASAVAVTPSSSVSRTTLTRLHPQPEVHAEILRFGMAL
ANNPKIQSAIREELEMHHVHHVQQQEHLEGGREGGREGGLDSAEATVVQM
ESNVRRIFCQGVAGGEEEEEEEEVGRQEGSGTSGSTGSSSCSPLTGSFEL
LEAMSTEWAQAQAQQEDNEDGEEGKFEEEHLAENVPSNCFVSVGRNMRRK
DSLAGEVSDEVLDELLRGDDDDDVIAQRLFAQTPDEQVRRYLRNLDLECV
ICCEYMVECKAVDCGEGHTFCGECIEQWLGREGGREGGGRCPTCQKPCGT
TIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHIRRALERQDREEEEA
AAAATAATGSQNLFAGLGYLLFGLGGSSGAGATRRRRRNRQAVAEASEAG
GGGGVAGVGSARGEGGRAEDAAQPWWKSEVLSTALSVATMLVLLVLFKRG
IKIR*
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Synonyms
Publications