NO08G01940, NO08G01940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G01940 vs. NCBI_GenBank
Match: CCA18599.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA20556.1 conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 101.7 bits (252), Expect = 3.400e-18 Identity = 66/157 (42.04%), Postives = 97/157 (61.78%), Query Frame = 0 Query: 50 ACRSSLLSSSAYRPATVRAMSSTAVEDATPSGVVDA--PIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 A ++ L R ++ SST D T +DA P+ SR ++ + K IR+SP K+ L +Q+RGLPV EAL+Q+KFSRK++ +V +QNA NLA+IR+N+ PE+L VAEAF + K + IMGRGR G+ +SH+V+ L+E + Sbjct: 20 AFTNAFLLQEHMRRLSISVDSSTTDLD-TVGEFLDATKPMESRTVKTI---KKDIRVSPRKLTYLAQQVRGLPVEEALLQMKFSRKRRA-GIVQTTVQNAVNLADIRYNIEPENLKVAEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLEEFE 171
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_009529510.1 (hypothetical protein PHYSODRAFT_401882, partial [Phytophthora sojae] >EGZ15761.1 hypothetical protein PHYSODRAFT_401882, partial [Phytophthora sojae]) HSP 1 Score: 101.7 bits (252), Expect = 3.400e-18 Identity = 68/161 (42.24%), Postives = 94/161 (58.39%), Query Frame = 0 Query: 49 GACRSSLLSSSAYRPATVRA-MSSTAVEDATPSGVVDAPIAS----REMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 GA + SA+ RA +S+TAVE T + A S E + V + K IR SP K+ L +QIRGLP EA++Q+KFS K+K + K +QNA NLA+I++ + PE+LMVAE F N+ K + IMGRGR G+ Y+H+ V L+E D Sbjct: 2 GALTLRPAAGSAFMGRVARATLSTTAVEGETAADDDTAAFLSSTSPAEPRTVKTVKRAIRASPRKLTYLAQQIRGLPANEAILQMKFSPKRKA-EIFQKTVQNAINLADIKYQIEPENLMVAECFVNKGTYLKRLRIMGRGRSGIMHHPYTHLTVVLREFD 161
BLAST of NO08G01940 vs. NCBI_GenBank
Match: GAY06078.1 (ribosomal protein L22 [Pythium insidiosum]) HSP 1 Score: 101.3 bits (251), Expect = 4.400e-18 Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 0 Query: 40 LQPSASTCAGACRSSLLSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 L+ SA+T A R++ S + A A +DAT S +DA +++ V + K IR SP K+ L +QIRGLP EAL+Q+KFS K+K +V K +QNA NLA+I++ + PE+L VAE F N+ + K + IMGRGR G+ +SH+ V L+E D Sbjct: 357 LRSSAATSGAAIRATGASFGGLHQFSTEA---EATQDAT-SAFLDA-TEGDDVRTVKTMKMNIRYSPRKLTYLAQQIRGLPANEALLQMKFSPKRKA-EIVRKTVQNAVNLADIKYQIEPENLQVAECFVNKGHYLKRLRIMGRGRSGIMHHPHSHLTVVLREYD 515
BLAST of NO08G01940 vs. NCBI_GenBank
Match: GAY01948.1 (ribosomal protein L22 [Pythium insidiosum]) HSP 1 Score: 101.3 bits (251), Expect = 4.400e-18 Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 0 Query: 40 LQPSASTCAGACRSSLLSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 L+ SA+T A R++ S + A A +DAT S +DA +++ V + K IR SP K+ L +QIRGLP EAL+Q+KFS K+K +V K +QNA NLA+I++ + PE+L VAE F N+ + K + IMGRGR G+ +SH+ V L+E D Sbjct: 357 LRSSAATSGAAIRATGASFGGLHQFSTEA---EATQDAT-SAFLDA-TEGDDVRTVKTMKMNIRYSPRKLTYLAQQIRGLPANEALLQMKFSPKRKA-EIVRKTVQNAVNLADIKYQIEPENLQVAECFVNKGHYLKRLRIMGRGRSGIMHHPHSHLTVVLREYD 515
BLAST of NO08G01940 vs. NCBI_GenBank
Match: EJK70164.1 (hypothetical protein THAOC_08501 [Thalassiosira oceanica]) HSP 1 Score: 98.2 bits (243), Expect = 3.700e-17 Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 0 Query: 92 MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEE 231 ++ + IR SPW++NL+ + GL V EA+ QL F K+ P V+ VI+ ANLA+IR L P L VAE F K + IMGRGR G RR+ H+ + L+EIDF L K+ QK+RW K+A E Sbjct: 57 LRTYVGNDKNIRHSPWRMNLVCQFAAGLTVPEAMKQLTFLNKRMA-PRVSNVIRRTANLADIRDGLQPSQLEVAECFATHGTHLKRLKIMGRGRSGTMHRRHCHIRLVLREIDFPTKLLQAKSVNQKRRWLGLLKIARE 194
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_002909114.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY57928.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 94.7 bits (234), Expect = 4.100e-16 Identity = 70/190 (36.84%), Postives = 103/190 (54.21%), Query Frame = 0 Query: 49 GACRSSLLSSSAYRPATVRAMSSTAVEDATPSGVVD------APIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQ--RWEARKKVAEE 231 GA + SA+ RA ST + + V D + + E + V + K IR SP K+ L +QIRGL EA++Q+KFS K+K + K +QNA NLA+I++ + PE+LMVAE F N+ K + IMGRGR G+ ++HV V L+E FD + K K+ R A+K++ +E Sbjct: 10 GALTLRPAAGSAFMGRVARATLSTTTVEGEAAAVDDDTAAFLSSTSPAEPRTVKTVKRSIRASPRKLTYLAQQIRGLSANEAILQMKFSPKRKA-EIFQKTVQNAINLADIKYQIEPENLMVAECFVNKGTYLKRLRIMGRGRSGVMHHPHTHVTVVLRE--FDPSKKPLNRHLTKKLARENAKKQLEKE 196
BLAST of NO08G01940 vs. NCBI_GenBank
Match: GAX23557.1 (hypothetical protein FisN_14Hh266 [Fistulifera solaris]) HSP 1 Score: 94.7 bits (234), Expect = 4.100e-16 Identity = 52/138 (37.68%), Postives = 81/138 (58.70%), Query Frame = 0 Query: 92 MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAE 230 M+ + ++ IR SPWK+N + + + GLP+ EAL QL+F +K K P+V K ++ AN A+++ L P L VAE F + K I MGRGR G ++SH+ + L+EIDF + + QK++W ++ AE Sbjct: 128 MRTYVGQEKNIRHSPWKLNRICQLVSGLPLPEALTQLEFCQKAKA-PIVQKALKRTANRADLQDGLQPSQLEVAECFATKGTPLKRIKTMGRGRSGRMEHKHSHIRLVLREIDFKLRIYQAPSLNQKKKWFLLQQQAE 264
BLAST of NO08G01940 vs. NCBI_GenBank
Match: GAX10745.1 (hypothetical protein FisN_14Lh266 [Fistulifera solaris]) HSP 1 Score: 94.7 bits (234), Expect = 4.100e-16 Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 0 Query: 92 MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAE 230 M+ + ++ IR SPWK+N + + + GLP+ EAL QL+F +K K P+V K ++ AN A+++ +L P L VAE F + K I MGRGR G ++SH+ + L+EIDF + + QK++W ++ AE Sbjct: 64 MRTYVGQEKNIRHSPWKLNRICQLVSGLPLPEALTQLEFCQKAKA-PIVQKALKRTANRADLKDSLQPSQLEVAECFATKGTPLKRIKPMGRGRSGRMEHKHSHIRLVLREIDFKLRIYQAPSLNQKKKWFLLQQQAE 200
BLAST of NO08G01940 vs. NCBI_GenBank
Match: POM58500.1 (Ribosomal protein L22 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 94.0 bits (232), Expect = 7.100e-16 Identity = 71/198 (35.86%), Postives = 106/198 (53.54%), Query Frame = 0 Query: 49 GACRSSLLSSSAYRPATVRA-MSSTAVE-------DATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAA 239 GA + SA+ RA +S+TAVE D T +P R ++ V K IR SP K+ L +QIRGLP EA++Q+KFS K+K + K +QNA NLA+I++ + PE+LMV+E F N+ K + IMGRGR G+ Y+H+ V L+E + E R+ ++K ++V+ + A Sbjct: 2 GALTLRPATGSAFMGRVARATLSTTAVETEAASDDDTTAFLNSTSPAEPRTVKTV---KRAIRASPRKLTYLAQQIRGLPANEAILQMKFSPKRKA-EIFKKTVQNAINLADIKYQIEPENLMVSECFVNKGTYLKRLRIMGRGRSGVMHHPYTHLTVILREFEPSEK--------SLTRYSSKKNTKKQVKQVEQEA 187
BLAST of NO08G01940 vs. NCBI_GenBank
Match: POM69232.1 (Ribosomal protein L22 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 94.0 bits (232), Expect = 7.100e-16 Identity = 69/195 (35.38%), Postives = 105/195 (53.85%), Query Frame = 0 Query: 49 GACRSSLLSSSAYRPATVRA-MSSTAVEDATPSGVVDAPI----ASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAA 239 GA + SA+ RA +S+TAVE+ S + E + V + K IR SP K+ L +QIRGLP EA++Q+KFS K+K + K +QNA NLA+I++ + PE+LMV+E F N+ K + IMGRGR G+ Y+H+ V L+E + E R+ ++K ++V+ + A Sbjct: 2 GALTLRPATGSAFMGRVARATLSTTAVENEAASDDDTTAFLNSTSPAEPRTVKTVKRAIRASPRKLTYLAQQIRGLPANEAILQMKFSPKRKA-EIFKKTVQNAINLADIKYQIEPENLMVSECFVNKGTYLKRLRIMGRGRSGVMHHPYTHLTVILREFEPSEK--------SLTRYSSKKNTKKQVKQVEQEA 187 The following BLAST results are available for this feature:
BLAST of NO08G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G01940 ID=NO08G01940|Name=NO08G01940|organism=Nannochloropsis oceanica|type=gene|length=1357bpback to top protein sequence of NO08G01940.1 >NO08G01940.1-protein ID=NO08G01940.1-protein|Name=NO08G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bpback to top Synonyms
Publications
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