NO08G01940, NO08G01940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_005852392.1 (ribosomal protein l22 [Nannochloropsis gaditana CCMP526] >EKU23439.1 ribosomal protein l22 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 280.0 bits (715), Expect = 6.900e-72 Identity = 160/230 (69.57%), Postives = 179/230 (77.83%), Query Frame = 0 Query: 15 SLMLRLFRLPALSSAAAFSSSSPSLLQPSASTCAGACRSSL-LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAAGGAKG 244 S MLR RL + S+ + S PS+LQ C S + LSS+ RAMSSTAVE PSG +D PI SREM+EV+SRK+RIRMSPWKINLLTRQ+RGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAF NRANIQKGIM MG+GRFGLKLRRYSHVVVRLKEIDF+ +L CKNRFQ+ RWE R+ +A++VR AR G G Sbjct: 3 STMLR--RLFSRYSSPPLARSPPSMLQRPLE-----CESRVSLSSAPCVAVNKRAMSSTAVEGVAPSGALDEPIVSREMREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAG 225
BLAST of NO08G01940 vs. NCBI_GenBank
Match: EWM26721.1 (ribosomal protein l22 [Nannochloropsis gaditana]) HSP 1 Score: 250.8 bits (639), Expect = 4.500e-63 Identity = 125/152 (82.24%), Postives = 137/152 (90.13%), Query Frame = 0 Query: 92 MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAAGGAKG 244 M+EV+SRK+RIRMSPWKINLLTRQ+RGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAF NRANIQKGIM MG+GRFGLKLRRYSHVVVRLKEIDF+ +L CKNRFQ+ RWE R+ +A++VR AR G G Sbjct: 1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAG 152
BLAST of NO08G01940 vs. NCBI_GenBank
Match: CBN79348.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 119.0 bits (297), Expect = 2.100e-23 Identity = 63/135 (46.67%), Postives = 91/135 (67.41%), Query Frame = 0 Query: 91 EMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARK 226 +++E+ + IR+SPW +NLL + +RGLPVVEA QL F +K K VAK IQNA NLA++R+ L E+L V E F + + K + IMGRGR G+ R++SH+ V L+EIDFD+ LK +R ++++ ARK Sbjct: 42 DLREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKK-KHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQLKAAPSRNRREKLMARK 175
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_002285984.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95625.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 110.9 bits (276), Expect = 5.600e-21 Identity = 65/139 (46.76%), Postives = 84/139 (60.43%), Query Frame = 0 Query: 92 MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEE 231 ++ I + IR SPW++NL+ + G V EAL QL F++K PLVAKVI+ ANLA+IRH L P L VAE F + K I IMGRGR G K RR+SH+ + L+EIDF + + QK+RW R VA E Sbjct: 121 LKTYIGNERDIRHSPWRMNLVCQFAAGQTVPEALKQLMFTQKM-AAPLVAKVIRRTANLADIRHGLQPSQLEVAECFATHGSHLKRIKIMGRGRSGKKRRRFSHIRLVLREIDFPTKILQAETVNQKRRWLGRLAVARE 258
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_008607322.1 (hypothetical protein SDRG_03466 [Saprolegnia diclina VS20] >EQC39261.1 hypothetical protein SDRG_03466 [Saprolegnia diclina VS20]) HSP 1 Score: 108.2 bits (269), Expect = 3.600e-20 Identity = 68/149 (45.64%), Postives = 92/149 (61.74%), Query Frame = 0 Query: 56 LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 LS A T+RAMS+ A + A PS A+ + V + K IR+SP K+ LL +QIRGLP EAL Q+ FS K+K +V K +QNA NLA+I + + P +L VAEAF N+ K + IMGRGR G+K R +SH+ + L+E D Sbjct: 14 LSLKAPMMPTLRAMSTAAEDIALPS----LEDAADNFRTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKA-AIVKKTVQNAINLADINYGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_012193914.1 (hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65] >KDO35583.1 hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 107.1 bits (266), Expect = 8.100e-20 Identity = 68/149 (45.64%), Postives = 91/149 (61.07%), Query Frame = 0 Query: 56 LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 LS A T+RAMS+ A + A PS A+ + V + K IR+SP K+ LL +QIRGLP EAL Q+ FS K+K +V K +QNA NLA+I + P +L VAEAF N+ K + IMGRGR G+K R +SH+ + L+E D Sbjct: 14 LSLKAPMMPTLRAMSTAAEDIALPS----LEDAADNFRTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKA-AIVKKTVQNAINLADINFGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157
BLAST of NO08G01940 vs. NCBI_GenBank
Match: OQR92823.1 (hypothetical protein THRCLA_08608 [Thraustotheca clavata]) HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19 Identity = 65/149 (43.62%), Postives = 91/149 (61.07%), Query Frame = 0 Query: 56 LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 LS A R +S++A E A PS A + V + K IR+SP K+ LL +QIRGLP EAL+Q+++S K+K +V K +QNA NLA+I + + P +L +AEAF N+ K + IMGRGR G+K R +SH+ + LKE D Sbjct: 14 LSLKATMHVAARGLSTSAEEVALPS----LDDAIENFRTVKTMKKEIRVSPRKLTLLAQQIRGLPAEEALVQMQYSPKRKA-AIVKKTVQNAINLADINYGIEPSNLKIAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFD 157
BLAST of NO08G01940 vs. NCBI_GenBank
Match: OQR98787.1 (hypothetical protein ACHHYP_07842 [Achlya hypogyna]) HSP 1 Score: 105.5 bits (262), Expect = 2.300e-19 Identity = 84/204 (41.18%), Postives = 116/204 (56.86%), Query Frame = 0 Query: 28 SAAAFSSSSPSLLQPSASTCAGACRSSLLSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEA---LKGCKNRFQKQRWEARKKVA 229 S +FS ++ SL P+AS C G VRA+S+ A + A PS A+ + V + K IR+SP K++LL +QIRGLPV EAL Q+ FS K+K +V K +QNA NLA+I + + P +L VAEAF N+ K + IMGRGR G+K R +SH+ + LKE F+ A + K R QR +A + VA Sbjct: 3 SRLSFSLAALSLKTPAAS-CMG----------------VRALSTAAEDIALPS----LEDATEHFRTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKA-AIVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKE--FEPAAVPISKTKARKLAQRAQATQPVA 182
BLAST of NO08G01940 vs. NCBI_GenBank
Match: CCI42950.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 104.0 bits (258), Expect = 6.800e-19 Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 0 Query: 91 EMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 E + V + K IR+SP K+ L +Q+RGLP EAL+Q+KFSRK++ +V +QNA NLA+IR+N+ PE+L ++EAF + K + IMGRGR G+ +SH+V+ LKE + Sbjct: 60 EYRTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRA-TIVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLKEFE 172
BLAST of NO08G01940 vs. NCBI_GenBank
Match: GAX97168.1 (ribosomal protein L22 [Pythium insidiosum]) HSP 1 Score: 103.2 bits (256), Expect = 1.200e-18 Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 0 Query: 70 SSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205 S + +DAT S +DA +++ V + K IR SP K+ L +QIRGLP EAL+Q+KFS K+K +V K +QNA NLA+I++ + PE+L VAE F N+ + K + IMGRGR G+ +SH+ V L+E D Sbjct: 364 SGRSTQDAT-SAFLDA-TEGDDVRTVKTMKMNIRYSPRKLTYLAQQIRGLPANEALLQMKFSPKRKA-EIVRKTVQNAVNLADIKYQIEPENLQVAECFVNKGHYLKRLRIMGRGRSGIMHHPHSHLTVVLREYD 495 The following BLAST results are available for this feature:
BLAST of NO08G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G01940 ID=NO08G01940|Name=NO08G01940|organism=Nannochloropsis oceanica|type=gene|length=1357bpback to top protein sequence of NO08G01940.1 >NO08G01940.1-protein ID=NO08G01940.1-protein|Name=NO08G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bpback to top Synonyms
Publications
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