NO08G01940, NO08G01940 (gene) Nannochloropsis oceanica

Overview
NameNO08G01940
Unique NameNO08G01940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1357
Alignment locationchr8:589448..590804 +

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Properties
Property NameValue
DescriptionRibosomal protein l22
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:589448..590804 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036394Ribosomal_L22/L17_sf
IPR005727Ribosomal_L22_bac/chlpt-type
IPR001063Ribosomal_L22
Homology
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_005852392.1 (ribosomal protein l22 [Nannochloropsis gaditana CCMP526] >EKU23439.1 ribosomal protein l22 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 280.0 bits (715), Expect = 6.900e-72
Identity = 160/230 (69.57%), Postives = 179/230 (77.83%), Query Frame = 0
Query:   15 SLMLRLFRLPALSSAAAFSSSSPSLLQPSASTCAGACRSSL-LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAAGGAKG 244
            S MLR  RL +  S+   + S PS+LQ         C S + LSS+       RAMSSTAVE   PSG +D PI SREM+EV+SRK+RIRMSPWKINLLTRQ+RGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAF NRANIQKGIM MG+GRFGLKLRRYSHVVVRLKEIDF+ +L  CKNRFQ+ RWE R+ +A++VR AR   G   G
Sbjct:    3 STMLR--RLFSRYSSPPLARSPPSMLQRPLE-----CESRVSLSSAPCVAVNKRAMSSTAVEGVAPSGALDEPIVSREMREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAG 225          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: EWM26721.1 (ribosomal protein l22 [Nannochloropsis gaditana])

HSP 1 Score: 250.8 bits (639), Expect = 4.500e-63
Identity = 125/152 (82.24%), Postives = 137/152 (90.13%), Query Frame = 0
Query:   92 MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAAGGAKG 244
            M+EV+SRK+RIRMSPWKINLLTRQ+RGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAF NRANIQKGIM MG+GRFGLKLRRYSHVVVRLKEIDF+ +L  CKNRFQ+ RWE R+ +A++VR AR   G   G
Sbjct:    1 MREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRALADKVREAREGDGARAG 152          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: CBN79348.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.0 bits (297), Expect = 2.100e-23
Identity = 63/135 (46.67%), Postives = 91/135 (67.41%), Query Frame = 0
Query:   91 EMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARK 226
            +++E+ +    IR+SPW +NLL + +RGLPVVEA  QL F +K K    VAK IQNA NLA++R+ L  E+L V E F  +  + K + IMGRGR G+  R++SH+ V L+EIDFD+ LK   +R ++++  ARK
Sbjct:   42 DLREITTGLKEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKK-KHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQLKAAPSRNRREKLMARK 175          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_002285984.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95625.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.9 bits (276), Expect = 5.600e-21
Identity = 65/139 (46.76%), Postives = 84/139 (60.43%), Query Frame = 0
Query:   92 MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEE 231
            ++  I  +  IR SPW++NL+ +   G  V EAL QL F++K    PLVAKVI+  ANLA+IRH L P  L VAE F    +  K I IMGRGR G K RR+SH+ + L+EIDF   +   +   QK+RW  R  VA E
Sbjct:  121 LKTYIGNERDIRHSPWRMNLVCQFAAGQTVPEALKQLMFTQKM-AAPLVAKVIRRTANLADIRHGLQPSQLEVAECFATHGSHLKRIKIMGRGRSGKKRRRFSHIRLVLREIDFPTKILQAETVNQKRRWLGRLAVARE 258          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_008607322.1 (hypothetical protein SDRG_03466 [Saprolegnia diclina VS20] >EQC39261.1 hypothetical protein SDRG_03466 [Saprolegnia diclina VS20])

HSP 1 Score: 108.2 bits (269), Expect = 3.600e-20
Identity = 68/149 (45.64%), Postives = 92/149 (61.74%), Query Frame = 0
Query:   56 LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205
            LS  A    T+RAMS+ A + A PS       A+   + V + K  IR+SP K+ LL +QIRGLP  EAL Q+ FS K+K   +V K +QNA NLA+I + + P +L VAEAF N+    K + IMGRGR G+K R +SH+ + L+E D
Sbjct:   14 LSLKAPMMPTLRAMSTAAEDIALPS----LEDAADNFRTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKA-AIVKKTVQNAINLADINYGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: XP_012193914.1 (hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65] >KDO35583.1 hypothetical protein SPRG_00425 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 107.1 bits (266), Expect = 8.100e-20
Identity = 68/149 (45.64%), Postives = 91/149 (61.07%), Query Frame = 0
Query:   56 LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205
            LS  A    T+RAMS+ A + A PS       A+   + V + K  IR+SP K+ LL +QIRGLP  EAL Q+ FS K+K   +V K +QNA NLA+I   + P +L VAEAF N+    K + IMGRGR G+K R +SH+ + L+E D
Sbjct:   14 LSLKAPMMPTLRAMSTAAEDIALPS----LEDAADNFRTVRTMKKEIRVSPRKLTLLAQQIRGLPAEEALTQMHFSPKRKA-AIVKKTVQNAINLADINFGIEPSNLKVAEAFVNKGLFLKRLKIMGRGRSGIKHRPHSHLTIVLEEFD 157          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: OQR92823.1 (hypothetical protein THRCLA_08608 [Thraustotheca clavata])

HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19
Identity = 65/149 (43.62%), Postives = 91/149 (61.07%), Query Frame = 0
Query:   56 LSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205
            LS  A      R +S++A E A PS       A    + V + K  IR+SP K+ LL +QIRGLP  EAL+Q+++S K+K   +V K +QNA NLA+I + + P +L +AEAF N+    K + IMGRGR G+K R +SH+ + LKE D
Sbjct:   14 LSLKATMHVAARGLSTSAEEVALPS----LDDAIENFRTVKTMKKEIRVSPRKLTLLAQQIRGLPAEEALVQMQYSPKRKA-AIVKKTVQNAINLADINYGIEPSNLKIAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFD 157          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: OQR98787.1 (hypothetical protein ACHHYP_07842 [Achlya hypogyna])

HSP 1 Score: 105.5 bits (262), Expect = 2.300e-19
Identity = 84/204 (41.18%), Postives = 116/204 (56.86%), Query Frame = 0
Query:   28 SAAAFSSSSPSLLQPSASTCAGACRSSLLSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEIDFDEA---LKGCKNRFQKQRWEARKKVA 229
            S  +FS ++ SL  P+AS C G                VRA+S+ A + A PS       A+   + V + K  IR+SP K++LL +QIRGLPV EAL Q+ FS K+K   +V K +QNA NLA+I + + P +L VAEAF N+    K + IMGRGR G+K R +SH+ + LKE  F+ A   +   K R   QR +A + VA
Sbjct:    3 SRLSFSLAALSLKTPAAS-CMG----------------VRALSTAAEDIALPS----LEDATEHFRTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKA-AIVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKE--FEPAAVPISKTKARKLAQRAQATQPVA 182          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: CCI42950.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 104.0 bits (258), Expect = 6.800e-19
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 0
Query:   91 EMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205
            E + V + K  IR+SP K+  L +Q+RGLP  EAL+Q+KFSRK++   +V   +QNA NLA+IR+N+ PE+L ++EAF  +    K + IMGRGR G+    +SH+V+ LKE +
Sbjct:   60 EYRTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRA-TIVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLKEFE 172          
BLAST of NO08G01940 vs. NCBI_GenBank
Match: GAX97168.1 (ribosomal protein L22 [Pythium insidiosum])

HSP 1 Score: 103.2 bits (256), Expect = 1.200e-18
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 0
Query:   70 SSTAVEDATPSGVVDAPIASREMQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRLKEID 205
            S  + +DAT S  +DA     +++ V + K  IR SP K+  L +QIRGLP  EAL+Q+KFS K+K   +V K +QNA NLA+I++ + PE+L VAE F N+ +  K + IMGRGR G+    +SH+ V L+E D
Sbjct:  364 SGRSTQDAT-SAFLDA-TEGDDVRTVKTMKMNIRYSPRKLTYLAQQIRGLPANEALLQMKFSPKRKA-EIVRKTVQNAVNLADIKYQIEPENLQVAECFVNKGHYLKRLRIMGRGRSGIMHHPHSHLTVVLREYD 495          
The following BLAST results are available for this feature:
BLAST of NO08G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852392.16.900e-7269.57ribosomal protein l22 [Nannochloropsis gaditana CC... [more]
EWM26721.14.500e-6382.24ribosomal protein l22 [Nannochloropsis gaditana][more]
CBN79348.12.100e-2346.67conserved unknown protein [Ectocarpus siliculosus][more]
XP_002285984.15.600e-2146.76predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_008607322.13.600e-2045.64hypothetical protein SDRG_03466 [Saprolegnia dicli... [more]
XP_012193914.18.100e-2045.64hypothetical protein SPRG_00425 [Saprolegnia paras... [more]
OQR92823.11.100e-1943.62hypothetical protein THRCLA_08608 [Thraustotheca c... [more]
OQR98787.12.300e-1941.18hypothetical protein ACHHYP_07842 [Achlya hypogyna... [more]
CCI42950.16.800e-1946.49unnamed protein product [Albugo candida][more]
GAX97168.11.200e-1845.19ribosomal protein L22 [Pythium insidiosum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008838NSK008838Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01940.1NO08G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582464gene_3524Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g101gene3863Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01940.1NO08G01940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01940 ID=NO08G01940|Name=NO08G01940|organism=Nannochloropsis oceanica|type=gene|length=1357bp
GGAATGATGGGGCCTTTGTTCGCCGCGACTCAACCATCGCTGCTCTCTCA
TCACATATAGGAAGGATTTGTGTCACACGTGTGCGCACAGACACCCATGT
GCACCCCCACATCTTCTCTCAGGCGATCAATCAAGTTTTCTTTGATGCTG
CGTCTTTTCCGCCTGCCGGCCTTGTCGTCCGCGGCCGCCTTCTCCTCCTC
CAGCCCATCCCTCCTTCAGCCCTCCGCCTCCACTTGCGCGGGGGCTTGCA
GATCGTCGTTGTTATCATCCTCTGCTTACAGACCAGCGACGGTACGGGCC
ATGTCTTCGACCGCCGTGGAAGATGCCACGCCGTCGGGCGTTGTGGATGC
GCCGATTGCCTCCCGgtacgtggtcggagagaaaggaagggggaagggga
cgaccttagcagatgacgccaccgtgggggcaaacggagattaggcaaag
cacaatttgctcttgacagcttgtgaatgaggccagagggctatgctctc
ttgggtctgatgatgtcacagtgtcggcgtgcagtcagcctcccgtaatg
gtttgttgacatgaggaggtggctgccttcgttcccttccaccacaagca
aagggatatacatgcccttgattgcggtcatcaaagcatatacaacggtc
acctacctctttttccctttccataactcttccaaccagatgcacgaacg
ccatctcatcccgccctcctgctctccctccctcctcccacccctccctt
caacagCGAAATGCAGGAAGTCATCTCCCGGAAAGACCGCATCCGAATGT
CCCCCTGGAAAATCAATCTCCTCACCCGGCAAATCCGTGGCCTGCCCGTC
GTCGAAGCCCTAATGCAACTCAAGTTCTCCCGAAAGCAAAAAGGCCCCCC
ACTGGTTGCGAAAGTCATCCAAAACGCTGCCAACCTGGCGAATATCCGTC
ACAACCTCCACCCGGAGGATTTGATGGTCGCTGAAGCGTTCACCAACCGC
GCGAACATCCAAAAGGGGATCATGATTATGGGTCGGGGGCGATTCGGGCT
CAAGCTAAGGAGGTATTCCCACGTGGTTGTCCGATTGAAGGAGATTGATT
TCGACGAGGCTTTGAAAGGGTGTAAGAATAGGTTTCAGAAGCAACGGTGG
GAGGCTCGGAAGAAGGTGGCGGAGGAGGTGCGGGTTGCACGGAGGGCTGC
TGGCGGGGCAAAGGGGGAGGAGTAGGCGGCTCCTTAGGGGGAGCGTGACA
GGGAAGGGGGGTGACGAGAGAACGTAAGGAAGTGACGAGGAAGAGGGAGG
GAGGAGGAGAGTGGGTGATTATGGCATAAAGAAAAAAGTAATAATCTTAA
ATCGCTA
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protein sequence of NO08G01940.1

>NO08G01940.1-protein ID=NO08G01940.1-protein|Name=NO08G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MCTPTSSLRRSIKFSLMLRLFRLPALSSAAAFSSSSPSLLQPSASTCAGA
CRSSLLSSSAYRPATVRAMSSTAVEDATPSGVVDAPIASREMQEVISRKD
RIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANL
ANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLRRYSHVVVRL
KEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAAGGAKGEE*
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Synonyms
Publications