NO08G01880, NO08G01880 (gene) Nannochloropsis oceanica

Overview
NameNO08G01880
Unique NameNO08G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr8:571653..573011 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:571653..573011 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
GO:0005215transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR010617DUF1211_TMEM175
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
[Close]
BLAST of NO08G01880 vs. NCBI_GenBank
Match: EWM26717.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 9.000e-117
Identity = 211/306 (68.95%), Postives = 253/306 (82.68%), Query Frame = 0 
Query:    1 MDAPLLDRAASDSMLPRFSTLGMQNSILISGRMGRLQESDRIMAFTDATLAIVCTSCAVPLWANGTHNFNPVRLVPFVTSFFILVRLWEKHCQDFIRLEHIDEKLPHVNVLWIASLSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVGGTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLIAWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQLWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGRKDGGGR 307
            M+ PLL R+ SDS LP   + GMQ SIL+SGRMGRLQ+SDRIMAFTDA LAI+CTSCAVPLW+NGT NFNPVRLVPFVT+FFIL RLWE HCQDF RLEH+DEKLP +NVLWIAS++LLPF FV+LFVP T  GHL+YLGLWA VLLLVG  S+ LS++ +RLSAL+   +E +GW  RD  L ++LFQVGLV   ASL+A  EHLDIL+DDY +AFRPGH+R AAV++VVG+ ++W  +A R+NFR+LQ+WLG  S VLF GAVPRVRVEIFSDGVYAA+ATGLM+E+L+GLL   EG + GGG+
Sbjct:    1 MNEPLLQRSNSDSALPTLGSWGMQ-SILVSGRMGRLQDSDRIMAFTDAILAIICTSCAVPLWSNGTRNFNPVRLVPFVTTFFILSRLWEIHCQDFCRLEHVDEKLPQINVLWIASMTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQ 305
[Close]
BLAST of NO08G01880 vs. NCBI_GenBank
Match: EWM26716.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 2.700e-76
Identity = 143/218 (65.60%), Postives = 177/218 (81.19%), Query Frame = 0 
Query:   89 EKHCQDFIRLEHIDEKLPHVNVLWIASLSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVGGTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLIAWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQLWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGRKDGGGR 307
            E HCQDF RLEH+DEKLP +NVLWIAS++LLPF FV+LFVP T  GHL+YLGLWA VLLLVG  S+ LS++ +RLSAL+   +E +GW  RD  L ++LFQVGLV   ASL+A  EHLDIL+DDY +AFRPGH+R AAV++VVG+ ++W  +A R+NFR+LQ+WLG  S VLF GAVPRVRVEIFSDGVYAA+ATGLM+E+L+GLL   EG + GGG+
Sbjct:    9 EIHCQDFCRLEHVDEKLPQINVLWIASMTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQ 226
[Close]
BLAST of NO08G01880 vs. NCBI_GenBank
Match: EWM26718.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 2.400e-61
Identity = 121/191 (63.35%), Postives = 153/191 (80.10%), Query Frame = 0 
Query:  116 LSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVGGTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLIAWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQLWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGRKDGGGR 307
            ++LLPF FV+LFVP T  GHL+YLGLWA VLLLVG  S+ LS++ +RLSAL+   +E +GW  RD  L ++LFQVGLV   ASL+A  EHLDIL+DDY +AFRPGH+R AAV++VVG+ ++W  +A R+NFR+LQ+WLG  S VLF GAVPRVRVEIFSDGVYAA+ATGLM+E+L+GLL   EG + GGG+
Sbjct:    1 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQ 191
The following BLAST results are available for this feature:
BLAST of NO08G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26717.19.000e-11768.95hypothetical protein Naga_100001g94 [Nannochlorops... [more]
EWM26716.12.700e-7665.60hypothetical protein Naga_100001g94 [Nannochlorops... [more]
EWM26718.12.400e-6163.35hypothetical protein Naga_100001g94 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008844NSK008844Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01880.1NO08G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|363626gene_3517Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g94gene3869Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01880.1NO08G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01880 ID=NO08G01880|Name=NO08G01880|organism=Nannochloropsis oceanica|type=gene|length=1359bp
ATGGACGCACCACTCCTGGACCGGGCTGCGAGTGACTCTATGTTGCCCCG
GTTCAGCACATTGGGCATGCAAAATAGCATCCTTATAAGTGGGCGGATGG
GAAGATTGCAAGAATCAGATAGgtttgtggccaagggagggtgggaaaga
gatcgcgttgaggacggatggggcgcaggaaaagccttggcacgctagcg
tccgctggacaccacacaccacgtttagcaagtgtcacgcgtgtcgactc
tctttatatctcatccaaaaaatttcctgtcttccatcgtaccagAATAA
TGGCCTTCACCGATGCCACACTCGCCATCGTTTGCACGTCATGCGCCGTC
CCGCTCTGGGCCAACGGGACGCATAATTTCAACCCCGTGCGTTTAGTACC
CTTTGTCACAAGTTTCTTCATCTTAGTCCGGCTCTGgtacgtggagatgc
aaaatctttgctacgacacgctgggagagttctcaaccgcctccattttt
ccggggggggaagaatcaatggaagaactgattccattaaggatgttttt
actgacaaccacattatatagaagtgcatttcgcactggtacaaaactga
tgccacatacattcattatatattcatgcatttgttttcaaatgattatt
ctctggcggcacacacacaccaaaaccactaagGGAAAAGCACTGCCAAG
ACTTCATCCGCCTCGAGCACATCGATGAAAAGCTGCCACACGTAAACGTC
CTATGGATCGCTTCCCTCTCCCTCCTGCCCTTCAGTTTCGTTGTCCTATT
CGTCCCGACCACCACGAATGGGCACTTGATTTATTTAGGTCTTTGGGCAG
TAGTCCTGCTGCTGGTGGGAGGCACGTCGTACATGCTTTCAGCTTCCGCT
CGAAGACTCTCGGCATTGCAACCTTGTGATAGGGAGTACCAAGGATGGGT
AGGAAGAGATAAGACTTTGGGTATATCCCTCTTCCAGGTGGGTTTGGTTA
TTGTTGCGGCTTCTCTTATTGCGTGGGAAGAGCACCTAGATATATTAAGC
GATGACTACTTGAGGGCCTTTCGACCAGGGCATGTGAGAGCCGCGGCCGT
TGTGTGGGTGGTAGGCTTGTTTGTCTTCTGGGGTGCTATGGCGGGGAGGA
TGAATTTTCGGCTGTTGCAGCTGTGGCTGGGGAAGGAGAGTCCCGTGCTG
TTTGAGGGGGCGGTGCCACGGGTGAGGGTGGAGATTTTTTCTGATGGAGT
ATACGCGGCATCGGCTACAGGGCTGATGGTTGAGTTGCTGAATGGATTGC
TGCACACCCAAGAAGGCAGAAAGGATGGGGGGGGGAGGGGACGGTTTGGC
CAGGACTGA
back to top

protein sequence of NO08G01880.1

>NO08G01880.1-protein ID=NO08G01880.1-protein|Name=NO08G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MDAPLLDRAASDSMLPRFSTLGMQNSILISGRMGRLQESDRIMAFTDATL
AIVCTSCAVPLWANGTHNFNPVRLVPFVTSFFILVRLWEKHCQDFIRLEH
IDEKLPHVNVLWIASLSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVG
GTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLI
AWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQ
LWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGR
KDGGGRGRFGQD*
back to top
Synonyms
Publications