NO08G01880, NO08G01880 (gene) Nannochloropsis oceanica

Overview
NameNO08G01880
Unique NameNO08G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr8:571653..573011 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:571653..573011 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
GO:0005215transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR010617DUF1211_TMEM175
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
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BLAST of NO08G01880 vs. NCBI_GenBank
Match: EWM26717.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 9.000e-117
Identity = 211/306 (68.95%), Postives = 253/306 (82.68%), Query Frame = 0 
Query:    1 MDAPLLDRAASDSMLPRFSTLGMQNSILISGRMGRLQESDRIMAFTDATLAIVCTSCAVPLWANGTHNFNPVRLVPFVTSFFILVRLWEKHCQDFIRLEHIDEKLPHVNVLWIASLSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVGGTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLIAWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQLWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGRKDGGGR 307
            M+ PLL R+ SDS LP   + GMQ SIL+SGRMGRLQ+SDRIMAFTDA LAI+CTSCAVPLW+NGT NFNPVRLVPFVT+FFIL RLWE HCQDF RLEH+DEKLP +NVLWIAS++LLPF FV+LFVP T  GHL+YLGLWA VLLLVG  S+ LS++ +RLSAL+   +E +GW  RD  L ++LFQVGLV   ASL+A  EHLDIL+DDY +AFRPGH+R AAV++VVG+ ++W  +A R+NFR+LQ+WLG  S VLF GAVPRVRVEIFSDGVYAA+ATGLM+E+L+GLL   EG + GGG+
Sbjct:    1 MNEPLLQRSNSDSALPTLGSWGMQ-SILVSGRMGRLQDSDRIMAFTDAILAIICTSCAVPLWSNGTRNFNPVRLVPFVTTFFILSRLWEIHCQDFCRLEHVDEKLPQINVLWIASMTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQ 305
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BLAST of NO08G01880 vs. NCBI_GenBank
Match: EWM26716.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 2.700e-76
Identity = 143/218 (65.60%), Postives = 177/218 (81.19%), Query Frame = 0 
Query:   89 EKHCQDFIRLEHIDEKLPHVNVLWIASLSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVGGTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLIAWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQLWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGRKDGGGR 307
            E HCQDF RLEH+DEKLP +NVLWIAS++LLPF FV+LFVP T  GHL+YLGLWA VLLLVG  S+ LS++ +RLSAL+   +E +GW  RD  L ++LFQVGLV   ASL+A  EHLDIL+DDY +AFRPGH+R AAV++VVG+ ++W  +A R+NFR+LQ+WLG  S VLF GAVPRVRVEIFSDGVYAA+ATGLM+E+L+GLL   EG + GGG+
Sbjct:    9 EIHCQDFCRLEHVDEKLPQINVLWIASMTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQ 226
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BLAST of NO08G01880 vs. NCBI_GenBank
Match: EWM26718.1 (hypothetical protein Naga_100001g94 [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 2.400e-61
Identity = 121/191 (63.35%), Postives = 153/191 (80.10%), Query Frame = 0 
Query:  116 LSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVGGTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLIAWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQLWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGRKDGGGR 307
            ++LLPF FV+LFVP T  GHL+YLGLWA VLLLVG  S+ LS++ +RLSAL+   +E +GW  RD  L ++LFQVGLV   ASL+A  EHLDIL+DDY +AFRPGH+R AAV++VVG+ ++W  +A R+NFR+LQ+WLG  S VLF GAVPRVRVEIFSDGVYAA+ATGLM+E+L+GLL   EG + GGG+
Sbjct:    1 MTLLPFHFVILFVPATATGHLLYLGLWACVLLLVGVASHWLSSATQRLSALRLGVQEKKGWQQRDLALTLALFQVGLVTAGASLLARVEHLDILTDDYKKAFRPGHIRVAAVLFVVGVLIYWLCLALRINFRILQMWLGPRSAVLFNGAVPRVRVEIFSDGVYAAAATGLMIEVLSGLLRADEGAEGGGGQ 191
The following BLAST results are available for this feature:
BLAST of NO08G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26717.19.000e-11768.95hypothetical protein Naga_100001g94 [Nannochlorops... [more]
EWM26716.12.700e-7665.60hypothetical protein Naga_100001g94 [Nannochlorops... [more]
EWM26718.12.400e-6163.35hypothetical protein Naga_100001g94 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008844NSK008844Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01880.1NO08G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|363626gene_3517Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g94gene3869Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01880.1NO08G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01880 ID=NO08G01880|Name=NO08G01880|organism=Nannochloropsis oceanica|type=gene|length=1359bp
ATGGACGCACCACTCCTGGACCGGGCTGCGAGTGACTCTATGTTGCCCCG
GTTCAGCACATTGGGCATGCAAAATAGCATCCTTATAAGTGGGCGGATGG
GAAGATTGCAAGAATCAGATAGgtttgtggccaagggagggtgggaaaga
gatcgcgttgaggacggatggggcgcaggaaaagccttggcacgctagcg
tccgctggacaccacacaccacgtttagcaagtgtcacgcgtgtcgactc
tctttatatctcatccaaaaaatttcctgtcttccatcgtaccagAATAA
TGGCCTTCACCGATGCCACACTCGCCATCGTTTGCACGTCATGCGCCGTC
CCGCTCTGGGCCAACGGGACGCATAATTTCAACCCCGTGCGTTTAGTACC
CTTTGTCACAAGTTTCTTCATCTTAGTCCGGCTCTGgtacgtggagatgc
aaaatctttgctacgacacgctgggagagttctcaaccgcctccattttt
ccggggggggaagaatcaatggaagaactgattccattaaggatgttttt
actgacaaccacattatatagaagtgcatttcgcactggtacaaaactga
tgccacatacattcattatatattcatgcatttgttttcaaatgattatt
ctctggcggcacacacacaccaaaaccactaagGGAAAAGCACTGCCAAG
ACTTCATCCGCCTCGAGCACATCGATGAAAAGCTGCCACACGTAAACGTC
CTATGGATCGCTTCCCTCTCCCTCCTGCCCTTCAGTTTCGTTGTCCTATT
CGTCCCGACCACCACGAATGGGCACTTGATTTATTTAGGTCTTTGGGCAG
TAGTCCTGCTGCTGGTGGGAGGCACGTCGTACATGCTTTCAGCTTCCGCT
CGAAGACTCTCGGCATTGCAACCTTGTGATAGGGAGTACCAAGGATGGGT
AGGAAGAGATAAGACTTTGGGTATATCCCTCTTCCAGGTGGGTTTGGTTA
TTGTTGCGGCTTCTCTTATTGCGTGGGAAGAGCACCTAGATATATTAAGC
GATGACTACTTGAGGGCCTTTCGACCAGGGCATGTGAGAGCCGCGGCCGT
TGTGTGGGTGGTAGGCTTGTTTGTCTTCTGGGGTGCTATGGCGGGGAGGA
TGAATTTTCGGCTGTTGCAGCTGTGGCTGGGGAAGGAGAGTCCCGTGCTG
TTTGAGGGGGCGGTGCCACGGGTGAGGGTGGAGATTTTTTCTGATGGAGT
ATACGCGGCATCGGCTACAGGGCTGATGGTTGAGTTGCTGAATGGATTGC
TGCACACCCAAGAAGGCAGAAAGGATGGGGGGGGGAGGGGACGGTTTGGC
CAGGACTGA
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protein sequence of NO08G01880.1

>NO08G01880.1-protein ID=NO08G01880.1-protein|Name=NO08G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MDAPLLDRAASDSMLPRFSTLGMQNSILISGRMGRLQESDRIMAFTDATL
AIVCTSCAVPLWANGTHNFNPVRLVPFVTSFFILVRLWEKHCQDFIRLEH
IDEKLPHVNVLWIASLSLLPFSFVVLFVPTTTNGHLIYLGLWAVVLLLVG
GTSYMLSASARRLSALQPCDREYQGWVGRDKTLGISLFQVGLVIVAASLI
AWEEHLDILSDDYLRAFRPGHVRAAAVVWVVGLFVFWGAMAGRMNFRLLQ
LWLGKESPVLFEGAVPRVRVEIFSDGVYAASATGLMVELLNGLLHTQEGR
KDGGGRGRFGQD*
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Synonyms
Publications