NO08G01870, NO08G01870 (gene) Nannochloropsis oceanica

Overview
NameNO08G01870
Unique NameNO08G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length973
Alignment locationchr8:570137..571109 +

Link to JBrowse

Properties
Property NameValue
DescriptionCS-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:570137..571109 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
Homology
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BLAST of NO08G01870 vs. NCBI_GenBank
Match: EWM26625.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 253.4 bits (646), Expect = 7.500e-64
Identity = 139/250 (55.60%), Postives = 172/250 (68.80%), Query Frame = 0 
Query:    7 VSVLP---ALFLLVVLSVLAPGATGFLLPVPDYSVLSSYTAVGTAKSHGRGASI----YAAGDSHAFFLNTPPRPQKQEEMDPDFMDAAMDQAMHTVAMDWEGETSAPVKLQTSTAAATSSLPTNPFAAYEEFIEAPSTHSVYYRGHHEASFWRQGRDIIQLVVPVEPALSKSDVRFELSTKTRLRLILGETNVIFDRELSQPVYRESSFWYFEKNPEEGQKAIVIELDKRLGFSNWPKLFPEDADLSQV 250
            VS+LP    +  LV+L +L     GFLLPV       S+    +   H R  +      AA DS      +P + Q +E    + +DAAMDQ+MHTVAMDWE    AP+KLQTS     SSL  NPFAAYEEFIE P TH VYYRGHHE SFWRQGRD++QLVVPV+PA++K+D+ FEL+TKT LRL LG+   +FDREL+QPV+++ SFWYFE++PE  QKA+VIELDKRL +SNWPKLF  D DLS+V
Sbjct:    3 VSILPFTSKVSCLVILVLLLSLVDGFLLPVQ-----ISFDLRSSVPEHRRRPAYREIGLAAVDSQPPSAPSPAQTQAEESDVDEIIDAAMDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEV 247
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BLAST of NO08G01870 vs. NCBI_GenBank
Match: XP_005854444.1 (hypothetical protein NGA_0014902 [Nannochloropsis gaditana CCMP526] >EKU21910.1 hypothetical protein NGA_0014902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 239.6 bits (610), Expect = 1.100e-59
Identity = 112/161 (69.57%), Postives = 133/161 (82.61%), Query Frame = 0 
Query:   89 MDQAMHTVAMDWEGETSAPVKLQTSTAAATSSLPTNPFAAYEEFIEAPSTHSVYYRGHHEASFWRQGRDIIQLVVPVEPALSKSDVRFELSTKTRLRLILGETNVIFDRELSQPVYRESSFWYFEKNPEEGQKAIVIELDKRLGFSNWPKLFPEDADLSQV 250
            MDQ+MHTVAMDWE    AP+KLQTS     SSL  NPFAAYEEFIE P TH VYYRGHHE SFWRQGRD++QLVVPV+PA++K+D+ FEL+TKT LRL LG+   +FDREL+QPV+++ SFWYFE++PE  QKA+VIELDKRL +SNWPKLF  D DLS+V
Sbjct:    1 MDQSMHTVAMDWENVDPAPIKLQTSAGDENSSLRPNPFAAYEEFIEPPPTHVVYYRGHHERSFWRQGRDVVQLVVPVDPAVTKADIVFELATKTHLRLRLGDEPDLFDRELAQPVHKDGSFWYFEEHPETEQKAVVIELDKRLEYSNWPKLFAADVDLSEV 161
The following BLAST results are available for this feature:
BLAST of NO08G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26625.17.500e-6455.60CS-like domain protein [Nannochloropsis gaditana][more]
XP_005854444.11.100e-5969.57hypothetical protein NGA_0014902 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL106nonsL106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR139ngnoR139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008869NSK008869Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01870.1NO08G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582436gene_3516Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g72gene3888Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01870.1NO08G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01870 ID=NO08G01870|Name=NO08G01870|organism=Nannochloropsis oceanica|type=gene|length=973bp
TACACATCGCATTCACTCACGTTTCCCATCTCCGACCCCTGCCTCCCCTT
CAGATTTCTCCAGTGCCTCCTCCAACTTTCCAGTATCATCATGATCATCA
TGCGGGAGGTCTCTGTCCTGCCTGCATTGTTCCTCCTCGTCGTCCTCAGC
GTCCTGGCACCCGGAGCCACAGGCTTCCTGCTGCCTGTGCCAGACTACTC
AGTGCTATCCTCATATACAGCAGTAGGAACAGCCAAGAGTCATGGACGGG
GCGCATCTATATACGCCGCCGGGGATAGCCATGCCTTTTTTCTCAATACG
CCCCCACGACCGCAAAAACAAGAGGAAATGGACCCCGACTTCATGGATGC
GGCCATGGATCAAGCCATGCACACCGTCGCAATGGATTGGGAGGGCGAAA
CATCTGCACCCGTTAAGCTCCAGACGTCGACGGCGGCAGCGACATCCTCC
TTGCCCACCAACCCATTTGCGGCTTATGAAGAATTCATCGAGGCACCTTC
TACGCACTCGGTCTACTACCGAGGGCATCACGAAGCATCCTTCTGGCGAC
AAGGCCGTGATATAATTCAATTAGTCGTGCCCGTAGAACCGGCTTTGTCC
AAATCAGACGTGAGGTTCGAATTGAGCACCAAGACACGCCTGCGTTTGAT
CCTGGGCGAGACAAATGTGATTTTCGATAGGGAACTCTCTCAGCCTGTCT
ATAGAGAAAGCTCGTTCTGGTACTTTGAAAAGAATCCCGAGGAGGGTCAA
AAGGCTATTGTGATTGAGTTGGATAAACGGCTGGGGTTCTCGAACTGGCC
GAAGCTTTTCCCTGAGGATGCAGATTTGAGTCAGGTAGCTCAGGATGAGC
CGACCGCGGCGGGGCAAAGTTCAGTAGTTGTCTAGAGGCGTGTAGAGACG
GAATTAAATGATTTGGAGACAAACAAATATTGAAAATCAAGAAGAAGGAA
AAACTGCTTACGAGGAGGTGATA
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protein sequence of NO08G01870.1

>NO08G01870.1-protein ID=NO08G01870.1-protein|Name=NO08G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MIIMREVSVLPALFLLVVLSVLAPGATGFLLPVPDYSVLSSYTAVGTAKS
HGRGASIYAAGDSHAFFLNTPPRPQKQEEMDPDFMDAAMDQAMHTVAMDW
EGETSAPVKLQTSTAAATSSLPTNPFAAYEEFIEAPSTHSVYYRGHHEAS
FWRQGRDIIQLVVPVEPALSKSDVRFELSTKTRLRLILGETNVIFDRELS
QPVYRESSFWYFEKNPEEGQKAIVIELDKRLGFSNWPKLFPEDADLSQVA
QDEPTAAGQSSVVV*
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Synonyms
Publications