NO08G01850, NO08G01850 (gene) Nannochloropsis oceanica

Overview
NameNO08G01850
Unique NameNO08G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1682
Alignment locationchr8:566627..568308 +

Link to JBrowse

Properties
Property NameValue
DescriptionArginine-trna-protein transferase 1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:566627..568308 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
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BLAST of NO08G01850 vs. NCBI_GenBank
Match: WP_083560462.1 (hypothetical protein [Myxococcus fulvus] >SEU32410.1 hypothetical protein SAMN05443572_109120 [Myxococcus fulvus])

HSP 1 Score: 65.5 bits (158), Expect = 3.700e-7
Identity = 55/224 (24.55%), Postives = 89/224 (39.73%), Query Frame = 0 
Query:   96 DELMRKRGPDNYRKALE-EYKALLEKEPDNASLKLKLANASVSLLRSVTNANAVLIDGISDSEANRKLWKQYAFTAYDLLKDLHKSQPDNPQIHVLMTEAYTYRTSSKGILKAAVTGDGLTFMKLVNQIVKSHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFQAACKIEPRSLRNNYFLGVSQFHAGAWKEAAEAFTRAVGGEVESVAATEKDVAEFLKR 319
            D L  +RG     KALE E KA L   PD+  L  + A                 +   +D   + KL K      +D+ +   K  P+  + H          + + G++KA   G    F + ++  +K    +    P + +G +    PWP RD+ K+ E ++ A +  P  LR  YFL  +       KEA  A  +   G V    A  + + E+ K+
Sbjct:   28 DALHERRGEAEGGKALEAELKAALSVTPDDFELVWRQARQ---------------LQWQADGAGSEKLKKVLGRQTWDVAEKAVKLAPNRVEGHYFAAAGIGAYSQAVGVMKALGEGLEGKFNERLDAAIKLDSGFYGAAPLLAKGRYYYELPWPKRDLKKSAEYYEKAIQQHPEMLRAYYFLAETLLRDDKAKEARNAIQKVKQGSVAYDPAEGRRIQEWAKK 236
The following BLAST results are available for this feature:
BLAST of NO08G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
WP_083560462.13.700e-724.55hypothetical protein [Myxococcus fulvus] >SEU32410... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL106nonsL106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR139ngnoR139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008867NSK008867Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01850.1NO08G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582428gene_3514Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g75gene3886Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01850.1NO08G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01850 ID=NO08G01850|Name=NO08G01850|organism=Nannochloropsis oceanica|type=gene|length=1682bp
ACAGCCACAAAGATTAACAGCAATTTCGCAAGACCCATTCCTTCCGGCCG
TCACCATGCACGCCTCCGCCGCCACTTCCCCCGGCTCCTCCCTCCTCCCG
GCCCTCCTCGTCGTGTTGTGTCTCCTCTACCCTCCATCGGGCTGCGCCTG
CTTTCGTCTGGGCAAGCACGGCGGCAATGCGTCCACCATTACTAGCACTA
GCGGTGGCGCTGGCTCCTCGCCCTCCTCTTCCCCTGCCAAATGGAAGACG
CCACAATGGGGGAAAATGTTTGCGGAGGCCCTGGGCCAAACCGGCAACAC
GAACGATGGTAGCCACACCAGCATGGAGTGCAACGCGGCGGACGAGCTGA
TGCGTAAACGCGGGCCGGACAACTATCGGAAGGCGTTGGAGGAATACAAG
GCGTTGCTGGAGAAAGAGCCTGACAAgtgcgtgtagcggagggaacaggg
tggtgaggcgcgtagggtggtggggaggtttgagtagtctctacccttcc
gctcacgcaatagctgctctaaaggctggcatgttgagttatccactgat
tcatagaatttatgacacaaaccacctccgccacgctaaattatcttctc
atccctctcttcctccctttcttcgtccctcccccctcccccatcacaac
acagCGCCTCCCTCAAACTCAAACTCGCCAACGCCAGCGTTTCCCTCCTT
CGGTCTGTTACTAACGCTAACGCCGTCCTTATCGATGGCATCTCCGATAG
TGAGGCCAATCGAAAATTGTGGAAACAATACGCGTTCACTGCCTACGACC
TTCTCAAAGACCTGCACAAATCCCAACCAGACAACCCCCAAATCCACGTC
TTGATGACCGAGGCCTATACCTACCGTACCTCCAGCAAGGGCATCCTCAA
GGCAGCAGTCACAGGAGACGGACTCACATTCATGAAGCTGGTCAATCAGA
TCGTGAAGAGTCATCCCACCTACGATGCCGGGGTTCCATTTATCTTCCGC
GGGGCCTTTCTACTGGCTGCGCCCTGGCCCCTGCGAGACGTACCCAAGGC
GGTCGAAGCCTTCCAAGCTGCGTGCAAAATAGAGCCGAGAAGCCTGCGGA
ATAATTACTTTCTGGGAGTTTCTCAGTTTCATGCCGGCGCGTGGAAGGAG
GCAGCGGAGGCCTTCACGCGTGCTGTGGGAGGGGAAGTGGAATCGGTGGC
AGCGACCGAGAAGGATGTAGCCGAGTTTTTGAAAAGAGAGAGCAGGCGGT
CATTGGACGTGACCAAAGGGAAGATTGCGGCAACCAAGATGTAGGGAGGG
GGTGGATGGCGGATTCTGGGGTTTGGGGGGTGGATAAGCTTCATGTACCA
TAGAGCTTAGAGAAGGAAAGGAAGGGGCATGGCGGCGTTTGCAGCTTGCT
GTATGCACGGGCCAGTATCACCCATACCATCCTCATCCTTGTGATTATGA
TAAAATTACGCATGCAATGGGTGGAAGGTGGGCTTCTATAGAATATGATA
GAAAAGCCGGCTTCAATAGAGGCAGAAAGGGGGGAAGAGTGGGAGAGGGA
GATGGTGAAAAGACTTATGACATCGCTGTCGAGAGCATCAGCAACGCACT
AGCCAGCAGAACCACACGACAAGAAAAGATATGACTTCAAAAGGAATGTA
ACAAATGAAGGAGAAGCTCTTTGCCCTCCCCG
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protein sequence of NO08G01850.1

>NO08G01850.1-protein ID=NO08G01850.1-protein|Name=NO08G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MHASAATSPGSSLLPALLVVLCLLYPPSGCACFRLGKHGGNASTITSTSG
GAGSSPSSSPAKWKTPQWGKMFAEALGQTGNTNDGSHTSMECNAADELMR
KRGPDNYRKALEEYKALLEKEPDNASLKLKLANASVSLLRSVTNANAVLI
DGISDSEANRKLWKQYAFTAYDLLKDLHKSQPDNPQIHVLMTEAYTYRTS
SKGILKAAVTGDGLTFMKLVNQIVKSHPTYDAGVPFIFRGAFLLAAPWPL
RDVPKAVEAFQAACKIEPRSLRNNYFLGVSQFHAGAWKEAAEAFTRAVGG
EVESVAATEKDVAEFLKRESRRSLDVTKGKIAATKM*
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Synonyms
Publications