NO08G01820, NO08G01820 (gene) Nannochloropsis oceanica

Overview
NameNO08G01820
Unique NameNO08G01820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2064
Alignment locationchr8:556673..558736 -

Link to JBrowse

Properties
Property NameValue
DescriptionZn(2)-C6 fungal-type DNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:556673..558736 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO08G01820 vs. NCBI_GenBank
Match: EWM26698.1 (Zn(2)-C6 fungal-type DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 406.4 bits (1043), Expect = 1.800e-109
Identity = 303/685 (44.23%), Postives = 367/685 (53.58%), Query Frame = 0 
Query:   18 EGEPPPTPSSVFPGVPLDKSDDQYVGSICVAGNTLEKQENCNAEDEGEDGNMDGSQQLQDNDAGQ-EGGPYPNTIHATNTGVAQRVKISINTSLDEVSMDRTMADGYGDLNSPRHRTTPRRSCGGPKSWQEEKTFGDDPHEGKRPCSTCRKSKVRCDRGFPCTRCVRLGIDCHEQAKVRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIPPATVP---GPAMFSSAAIINGDNGFHDTSGNHXXXXXXXXXXXXXXXXXXXLTNFAPG---SCRSFVLSNEPNXXXXXXXXXXXXXXXMQHLAQLPSY-QQYPRHEKQQR-------HPISSPARLHLQ-----QPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLISPMQTVMESFLKLHAQSRICRGKTLAVMRAWAVTYAKDRGACALGDRLGVLSSALGMDWKMVLSDRATVGEAVEATRGGPRAPETAVAFDATKLDPFLKALYSDAGAAAALVTVQGHTKLLGNELFARDFLDPCSCNQAWAQAQERKQQGLTDPIDILGSLLSREDQGEFFESVGAMLFSNPRPCAEVQHIVRALTRRRESGGVLCLARLRFHIADGGG 683
            EGEPPP  +       ++  ++Q+V    + G   E +    A+ E + G + G    Q  +A    GG  P      N G      + I+TSL+ +  D T A G  ++ SPR+RTTPRRSCGGPK W EEK FG+DPH GKRPCSTCRKSKVRCDRGFPCTRCVRLG+DC EQA+VRR                                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                     P + +P    PA+  + A ++    F+                         ++  A G   + RSF+L+ +                 +QH  Q   Y  + PR ++ Q        H +  PA+LH        PH                            YL+SP QTVMESFLKLHAQSRICRGK+LAVMR+WA+ Y+K  GA ALGDRL VLS+ALG+DWK  L+D ATV EA  AT G   APE  VAF+   LDPFL+ALY+DA AAAALV  QGHT+LLGN LF+RDF+DP SCN AW Q +ER+Q+  TDP+DILG LLSREDQGEFF SVGAMLFSNPRPCAE+ HI R LTR+RES  +L L R+RFH+ADGGG
Sbjct:   12 EGEPPPLYTDGMFEEGVEGVEEQHVNVSYMKGEGEEIEGVHTADMERKGGQLQGRAAAQSEEAAVFMGGACPE----NNMG------MRISTSLNSIETDVTNA-GRQEVLSPRNRTTPRRSCGGPKVWMEEKVFGEDPHGGKRPCSTCRKSKVRCDRGFPCTRCVRLGLDCREQARVRRGGLSRSHGGRPHSANSSVTSGGSVHRESSACSMDSLNQAGKEVIMPPSVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVRPLHVNNMASHPVAGHTVHPGLSEPQAGQGTRAPFPSSHLPTLSDPALLCADAALDAGASFYGLGSGQ-------------EGDDCSMSQGASGNHPTRRSFLLNPD------------GPSLPLQHPHQASQYHSKRPRQQQNQEEQTHVPYHALKQPAQLHFSPGRRPAPH------------------HQLPAHASATYLVSPTQTVMESFLKLHAQSRICRGKSLAVMRSWALAYSKGLGAAALGDRLSVLSAALGIDWKTALTDPATVEEAARATTGS-TAPEAVVAFEPAHLDPFLRALYTDASAAAALVACQGHTQLLGNALFSRDFIDPASCNAAWVQVRERQQEAGTDPMDILGGLLSREDQGEFFHSVGAMLFSNPRPCAEMAHIARVLTRQRES--ILALVRVRFHLADGGG 639
The following BLAST results are available for this feature:
BLAST of NO08G01820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26698.11.800e-10944.23Zn(2)-C6 fungal-type DNA-binding protein [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL106nonsL106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR139ngnoR139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01820.1NO08G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01820.1NO08G01820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01820 ID=NO08G01820|Name=NO08G01820|organism=Nannochloropsis oceanica|type=gene|length=2064bp
ATGCCTCTTGCAAACATAAACATATCAACGCCCGGAGGGCTCATTCGCGA
GGAGGGCGAGCCGCCGCCGACCCCTTCGTCTGTCTTTCCCGGGGTGCCGT
TAGATAAGAGTGATGACCAGTATGTCGGCTCCATCTGCGTTGCGGGGAAT
ACATTGGAGAAGCAAGAGAATTGCAACGCCGAGGATGAAGGGGAGGATGG
CAACATGGATGGCAGCCAGCAGCTGCAGGACAACGATGCCGGACAGGAGG
GAGGGCCCTACCCCAACACCATTCACGCCACCAACACCGGTGTGGCTCAA
AGGGTGAAAATTAGCATTAATACCAGCTTGGACGAAGTGAGCATGGATAG
GACCATGGCCGATGGCTATGGGGATCTGAACAGCCCCCGGCATCGTACCA
CCCCACGTCGGTCCTGCGGTGGGCCTAAGTCTTGGCAAGAGGAGAAGACA
TTTGGCGATGACCCTCACGAGGGAAAGCGACCGTGCTCTACGTGTCGCAA
GAGCAAGGTGAGATGTGACCGCGGCTTTCCATGCACGCGGTGTGTGAGGT
TGGGGATTGACTGTCACGAGCAGGCGAAGGTCCGTAGGGGAGCTGGAGGA
GGGGGGGGAGGGAGCGGACCCTCTTCTCGCTCGCAAAGTGGGAGTGGGAG
TCGACAGAACAGCATGCACAAAGCCTCTTCTTCGGGCTCGATGGCCTTGA
GCACCCAGACGGGCGGGGAGGAGAAGACTTGCATGTCCTCCTCTGCCTCC
ATTTCCTCCTCCTTGTCCTCGTCCTCCTCGTCCTCGTCCTCTGGGCAAAG
TGGAGAGCGGAGGCGCCGCTCAAATTCCACGTCCAGCACCCCCTCATCCA
AGCGAAATGGGGGAGGAAGTGGGGAAGGGCGAGGGCGAACGCGTGTATCG
ACTGCTACTGCGCCTTGTGCCTTCTCCTCTTCCTCAATTCCTCCTGCCAC
TGTGCCTGGTCCTGCCATGTTTTCCTCTGCAGCTATCATCAATGGCGACA
ACGGATTTCATGACACCAGCGGCAACCACGACAACAGCGACAGCACCACG
AGCAGCAGCTTGAACAGCAACAGCACCAACAACCACCTCACCAATTTTGC
TCCTGGCAGTTGCCGTAGCTTCGTGCTGTCCAACGAGCCCAACCCCAGCC
CCAACCCCAGCCCCACCCCCTCATCCTCCCCATTCAACATGCAGCATCTT
GCCCAGCTACCCTCGTACCAGCAATACCCCCGTCACGAGAAGCAGCAAAG
ACACCCCATCTCTTCCCCTGCCAGGCTGCACCTCCAACAGCCCCACTATC
TCCAAAACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAACAGCATCAGCAACAAGCGAGCTACCTCATCTCTCCCATGCA
GACCGTCATGGAGTCCTTCCTCAAGCTTCATGCCCAATCCCGGATTTGTC
GTGGGAAGACCCTGGCTGTGATGCGTGCCTGGGCTGTGACCTACGCGAAA
GATCGAGGCGCTTGCGCGCTCGGTGACCGACTCGGCGTCCTTTCAAGTGC
CCTCGGGATGGATTGGAAGATGGTTCTCTCGGACAGAGCAACGGTGGGGG
AGGCAGTGGAGGCCACGAGAGGTGGACCACGCGCTCCAGAGACAGCTGTC
GCCTTTGATGCGACCAAGCTAGATCCGTTCCTGAAAGCCCTGTATTCGGA
TGCAGGGGCTGCCGCCGCGCTAGTGACAGTGCAAGGACACACGAAATTGT
TGGGGAATGAATTGTTTGCGCGGGATTTTCTTGACCCCTGTTCCTGTAAC
CAGGCGTGGGCGCAGGCGCAGGAGAGAAAGCAGCAGGGACTCACGGACCC
AATCGATATCTTGGGGAGTCTGTTAAGTAGGGAAGACCAGGGAGAGTTTT
TTGAGAGTGTGGGTGCGATGTTGTTCTCAAATCCGAGGCCCTGCGCGGAA
GTGCAGCACATAGTCAGGGCATTGACGAGGAGGAGGGAGAGTGGGGGGGT
GTTGTGCTTAGCCAGACTTAGGTTTCACATCGCCGATGGGGGGGGTATTC
AGCGTTGGTATTGA
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protein sequence of NO08G01820.1

>NO08G01820.1-protein ID=NO08G01820.1-protein|Name=NO08G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MPLANINISTPGGLIREEGEPPPTPSSVFPGVPLDKSDDQYVGSICVAGN
TLEKQENCNAEDEGEDGNMDGSQQLQDNDAGQEGGPYPNTIHATNTGVAQ
RVKISINTSLDEVSMDRTMADGYGDLNSPRHRTTPRRSCGGPKSWQEEKT
FGDDPHEGKRPCSTCRKSKVRCDRGFPCTRCVRLGIDCHEQAKVRRGAGG
GGGGSGPSSRSQSGSGSRQNSMHKASSSGSMALSTQTGGEEKTCMSSSAS
ISSSLSSSSSSSSSGQSGERRRRSNSTSSTPSSKRNGGGSGEGRGRTRVS
TATAPCAFSSSSIPPATVPGPAMFSSAAIINGDNGFHDTSGNHDNSDSTT
SSSLNSNSTNNHLTNFAPGSCRSFVLSNEPNPSPNPSPTPSSSPFNMQHL
AQLPSYQQYPRHEKQQRHPISSPARLHLQQPHYLQNHHQQQQQQQQQQQQ
QQQQHQQQASYLISPMQTVMESFLKLHAQSRICRGKTLAVMRAWAVTYAK
DRGACALGDRLGVLSSALGMDWKMVLSDRATVGEAVEATRGGPRAPETAV
AFDATKLDPFLKALYSDAGAAAALVTVQGHTKLLGNELFARDFLDPCSCN
QAWAQAQERKQQGLTDPIDILGSLLSREDQGEFFESVGAMLFSNPRPCAE
VQHIVRALTRRRESGGVLCLARLRFHIADGGGIQRWY*
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Synonyms
Publications