NO08G01710, NO08G01710 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G01710
Unique Name	NO08G01710
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3158
Alignment location	chr8:535773..538930 -

Link to JBrowse

Properties


Property Name	Value
Description	Tetratricopeptide-like helical protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:535773..538930 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat

Homology

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_008902015.1 (hypothetical protein PPTG_09002 [Phytophthora parasitica INRA-310] >ETL45326.1 hypothetical protein L916_04555 [Phytophthora parasitica] >ETN13020.1 hypothetical protein PPTG_09002 [Phytophthora parasitica INRA-310] >ETP21870.1 hypothetical protein F441_04707 [Phytophthora parasitica CJ01A1] >KUF87775.1 ER membrane protein complex subunit 2 [Phytophthora nicotianae])

HSP 1 Score: 119.4 bits (298), Expect = 1.900e-23
Identity = 83/257 (32.30%), Postives = 114/257 (44.36%), Query Frame = 0

Query:   16 VLKYIRHHRIRASTEVVQHGRDFVMEGKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYT 273
            +L Y+R  ++R    V   G+  V +     LGDE W VYEQ F+AALDL +  LAET L+ LQ KFP S+RV RLEGM  E  G+F +A  +Y +L                                                                YEELVL +P +   H  LA+ Y  IGG ++L  ARKHYA ++EL+    NLRA + +     A+A      +D+ D  +N  L   A D +++ YT
Sbjct:   25 LLHYVRKEKLREPRAVASIGKLLVTK-HSWGLGDELWGVYEQTFVAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQRGEFAKALVLYAELLEANPANALVLKRKIAVLKAQKKTAEVVTALNEFLKSFGTDQAAWTELGETYLSMGAYRYAAFCYEELVLLNPMDAISHSRLADIYSTIGGLDNLLTARKHYAHSIELN-KKQNLRAYFSLVTCTKAIAAQRGYRADQDDDGINERLQKFALDHIQDFYT 279

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_018490631.1 (PREDICTED: ER membrane protein complex subunit 2-like isoform X1 [Raphanus sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.900e-23
Identity = 80/268 (29.85%), Postives = 123/268 (45.90%), Query Frame = 0

Query:   20 IRHHRIRASTEVVQHGRDFVME-GKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATL 287
            +R  ++R S  V++HG   + + GK S+LG + W +YEQV +AA+D     +A+  +++LQKKFP+S RVG+LE ++ EA+G +E+A K Y  L                                                                YEEL+L  P    +H+A AE    IGG E+L  ARK+YA  ++L GG  + RAL+G+C    A+A+ S   + E        L +LA   L++ Y +  PA    + + L
Sbjct:   31 VRKLKVRRSELVLKHGLSILNDPGKRSALGPDEWTLYEQVAIAAMDCQSLAVAQNCIKVLQKKFPESKRVGKLEALLLEAKGMWEEAEKAYSILLEDNPLDQVIHKRKVAMAKAQGKPSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTLPLYHLAYAEVLYTIGGHENLIAARKYYASTIDLTGG-KSTRALFGLCLCGSAIAQLSKGRNKEDKDMAAPELQSLAATALEKEYKQKAPAKLNLLSSAL 297

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_018490632.1 (PREDICTED: ER membrane protein complex subunit 2-like isoform X2 [Raphanus sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.900e-23
Identity = 80/268 (29.85%), Postives = 123/268 (45.90%), Query Frame = 0

Query:   20 IRHHRIRASTEVVQHGRDFVME-GKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATL 287
            +R  ++R S  V++HG   + + GK S+LG + W +YEQV +AA+D     +A+  +++LQKKFP+S RVG+LE ++ EA+G +E+A K Y  L                                                                YEEL+L  P    +H+A AE    IGG E+L  ARK+YA  ++L GG  + RAL+G+C    A+A+ S   + E        L +LA   L++ Y +  PA    + + L
Sbjct:   31 VRKLKVRRSELVLKHGLSILNDPGKRSALGPDEWTLYEQVAIAAMDCQSLAVAQNCIKVLQKKFPESKRVGKLEALLLEAKGMWEEAEKAYSILLEDNPLDQVIHKRKVAMAKAQGKPSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTLPLYHLAYAEVLYTIGGHENLIAARKYYASTIDLTGG-KSTRALFGLCLCGSAIAQLSKGRNKEDKDMAAPELQSLAATALEKEYKQKAPAKLNLLSSAL 297

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_012200933.1 (hypothetical protein SPRG_06736 [Saprolegnia parasitica CBS 223.65] >KDO28497.1 hypothetical protein SPRG_06736 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 118.6 bits (296), Expect = 3.200e-23
Identity = 79/256 (30.86%), Postives = 119/256 (46.48%), Query Frame = 0

Query:   16 VLKYIRHHRIRASTEVVQHGRDFVMEGKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHY 272
            +L+++R  ++R    VV+ G+  V  G    LGD  W ++EQV +AALDLG   + +++   L+ KFPDS+RV RLEGMI EA+G + QA  +Y D+                                                                YEEL+L +P +   H  LAE YV IGG ++LR ARKH+A A++L+    + R L G+     A+A + ++  ++ D  +NA L   A  KL+  Y
Sbjct:   22 LLEFVRKEKLRVPDVVVKVGQALVARG---GLGDALWTIHEQVLIAALDLGAMDVVDSTFLALKNKFPDSSRVLRLEGMIFEAQGKYAQADALYKDILAKNPANMLVMKRQVSLLRAQGRTEDAITKLNALLRCFQTDAGAWCELSELYLSLGNYKHAAFCYEELILLNPLDALNHTRLAELYVTIGGLDNLRTARKHFAHALDLNA--QSTRGLVGLVMCTSAIASTKTARPEKDDRELNARLHQFALQKLRGVY 272

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_013750434.1 (ER membrane protein complex subunit 2 [Brassica napus] >CDY40678.1 BnaC03g33940D [Brassica napus])

HSP 1 Score: 118.2 bits (295), Expect = 4.200e-23
Identity = 81/268 (30.22%), Postives = 122/268 (45.52%), Query Frame = 0

Query:   20 IRHHRIRASTEVVQHGRDFVME-GKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATL 287
            +R  ++R S  V++HG   + + GK SSLG + W +YEQV +AA+D      A+  +++LQKKFP+S RVG+LE ++ EA+G +E+A K Y  L                                                                YEEL+L  P    +H+A AE    IGG E+L  ARK+YA  ++L GG  + RAL+G+C    A+A+ S   + E        L +LA   L++ Y +  PA    + + L
Sbjct:   31 VRKLKVRRSELVLKHGLSILNDPGKRSSLGPDEWTLYEQVAIAAMDCQSLGAAQNCIKVLQKKFPESKRVGKLEALLLEAKGMWEEAEKAYSILLEDNPLDQVIHKRKVAMAKAQGKPSSAIEHLNKYLEVFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTLPLYHLAYAEVLYTIGGQENLIAARKYYASTIDLTGG-KSTRALFGICLCGSAIAQLSKGRNKEDKDMAAPELQSLAATALEKEYKQKAPAKLNLLSSAL 297

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_013735786.1 (ER membrane protein complex subunit 2-like [Brassica napus])

HSP 1 Score: 118.2 bits (295), Expect = 4.200e-23
Identity = 81/268 (30.22%), Postives = 122/268 (45.52%), Query Frame = 0

Query:   20 IRHHRIRASTEVVQHGRDFVME-GKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATL 287
            +R  ++R S  V++HG   + + GK SSLG + W +YEQV +AA+D      A+  +++LQKKFP+S RVG+LE ++ EA+G +E+A K Y  L                                                                YEEL+L  P    +H+A AE    IGG E+L  ARK+YA  ++L GG  + RAL+G+C    A+A+ S   + E        L +LA   L++ Y +  PA    + + L
Sbjct:   31 VRKLKVRRSEIVLKHGLSILNDPGKRSSLGPDEWTLYEQVAIAAMDCQSLGAAQNCIKVLQKKFPESKRVGKLEALLLEAKGMWEEAEKAYSILLEDNPLDQVIHKRKVAMAKAQGKPSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTLPLYHLAYAEVLYTIGGQENLIAARKYYASTIDLTGG-KSTRALFGICLCGSAIAQLSKGRNKEDKDMAAPELQSLAATALEKEYKQKAPAKLNLLSSAL 297

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: GAQ81489.1 (hypothetical protein KFL_000810300 [Klebsormidium nitens])

HSP 1 Score: 118.2 bits (295), Expect = 4.200e-23
Identity = 84/276 (30.43%), Postives = 125/276 (45.29%), Query Frame = 0

Query:   17 LKYIRHHRIRASTEVVQHGRDFVMEGKGS-SLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATLSRQAA 292
            L+ +R  R+R S  VV +G++ V     +  LG + W VYEQV LAALD G+  LA+     + +KFP S RV ++ GM+ EA+ ++E+A +VY +                                                                 YEE+++  P N   H+A A+    +GG ++ RLARK+YA A+E+ GG  N+RALYG+  +  A+A ++           +  L  LA D LK+ Y +  PAL P V  TL  Q A
Sbjct:   36 LRLLRRMRLRRSECVVMYGQELVKNKAWTRRLGTQLWDVYEQVALAALDTGDLELAQECGNAVARKFPGSQRVAKMAGMLLEAQEEWEEADRVYKETLEETPGSHLIHKRRVAALKSQGNLTGAAEALNAYLDIFQADAEGWRELAEIYIKLQQYRQAAYCYEEVLVSQPQNSLIHMAYADVLYTLGGVDNFRLARKYYAAAVEISGG-GNVRALYGIVQSAAAIAAATKGNKRGEPESTDLPL--LAVDVLKKEYQQHCPALLPIVTRTLDGQVA 308

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_002896704.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY66817.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.9 bits (294), Expect = 5.500e-23
Identity = 81/257 (31.52%), Postives = 114/257 (44.36%), Query Frame = 0

Query:   16 VLKYIRHHRIRASTEVVQHGRDFVMEGKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYT 273
            +L Y+R  ++R S  V   G+  V +     +GDE W +YEQ F+AALDL +  LAET L+ LQ KFP S+RV RLEGM  E  G+F +A  +Y +L                                                                YEELVL +P +   H  L + Y  IGG E+L  ARKHYA ++EL+    NLRA + +     A+A      +D+ D  +N  L   A D +++ Y+
Sbjct:   25 LLHYVRKEKLRESQAVATIGKLLVTK-HSWGVGDELWSIYEQTFIAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQSGEFAKALALYAELLEANPANALVLKRKIAVLKAQKKAADVIIALNEFLRSFGTDQAAWTELGETYLSMGAYRYAAFCYEELVLLNPMDAISHSRLGDVYSTIGGLENLLKARKHYAHSIELN-KKQNLRASFSLVTCTKAIATQRGYRADQDDDGINERLQKFALDYIQDFYS 279

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_010256144.1 (PREDICTED: ER membrane protein complex subunit 2-A [Nelumbo nucifera])

HSP 1 Score: 117.9 bits (294), Expect = 5.500e-23
Identity = 80/277 (28.88%), Postives = 127/277 (45.85%), Query Frame = 0

Query:   11 GDSTAVLKYIRHHRIRASTEVVQHGRDFVMEGK-GSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATL 287
            G +   L  +R  ++R S +V++HG   + + K  S LG E W +YEQV +AA+D     +A+  +  LQ+KFP+S RVGRL+GM+ EA G ++ A   Y  L                                                                YEEL+LC P    +H+A A+    +GG E+L++++K+YA  ++L GG  N RAL+G+C    A+A+ S   + E   + ++ L  LA   L++ Y + +    P + ATL
Sbjct:   22 GGAWEYLCLVRKLKVRRSEKVLKHGLSILNDPKQRSKLGGEEWTLYEQVAIAAMDCQCVDIAKDCINALQRKFPESMRVGRLKGMLLEARGSWKDAEVAYSSLLEDNPLDQVIQKRRVAMAKAQGNISGAIECLNKYLEIFMADHEAWRELAEIYVSLQMYKQAAFCYEELILCQPLVPLYHLAYADVLYTLGGLENLQMSKKYYASTIDLTGG-KNTRALFGICLCSAAIAQLSKGRNKE--DKDSSELHTLAAKTLEKEYKQRSLTKLPLLTATL 295

[Close]

BLAST of NO08G01710 vs. NCBI_GenBank
Match: XP_013625657.1 (PREDICTED: ER membrane protein complex subunit 2-like [Brassica oleracea var. oleracea])

HSP 1 Score: 117.9 bits (294), Expect = 5.500e-23
Identity = 84/284 (29.58%), Postives = 127/284 (44.72%), Query Frame = 0

Query:    5 DQVLKQGDST-AVLKYIRHHRIRASTEVVQHGRDFVME-GKGSSLGDEAWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEGDFEQAAKVYLDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEELVLCSPANFAFHVALAEAYVGIGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDETDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATL 287
            DQV   G      L  +R  ++R S  V++HG   + + GK S+LG + W +YEQV +AA+D     +A+  +++LQKKFP+S RVG++E ++ EA+G +E+A K Y  L                                                                YEEL+L  P    +H+A AE    IGG E+L  ARK+YA  ++L GG  + RAL G+C    A+A+ S   + E        L +LA   L++ Y +  PA    + + L
Sbjct:   15 DQVENGGGGVWEYLCLVRKLKVRRSELVLKHGLSILNDPGKRSALGPDEWTLYEQVAIAAMDCQSLAVAQNCIKVLQKKFPESKRVGKIEALLLEAKGMWEEAEKAYSILLEDNPLDQVIHKRKVAMAKAQGKPSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTLPLYHLAYAEVLYTIGGHENLIAARKYYASTIDLTGG-KSTRALLGICLCGSAIAQLSKGRNKEDKDMAAPELQSLAATALEKEYKQKAPAKLNLLSSAL 297

The following BLAST results are available for this feature:

BLAST of NO08G01710 vs. NCBI_GenBank

BLAST of NO08G01710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008902015.1	1.900e-23	32.30	hypothetical protein PPTG_09002 [Phytophthora para...	[more]
XP_018490631.1	1.900e-23	29.85	PREDICTED: ER membrane protein complex subunit 2-l...	[more]
XP_018490632.1	1.900e-23	29.85	PREDICTED: ER membrane protein complex subunit 2-l...	[more]
XP_012200933.1	3.200e-23	30.86	hypothetical protein SPRG_06736 [Saprolegnia paras...	[more]
XP_013750434.1	4.200e-23	30.22	ER membrane protein complex subunit 2 [Brassica na...	[more]
XP_013735786.1	4.200e-23	30.22	ER membrane protein complex subunit 2-like [Brassi...	[more]
GAQ81489.1	4.200e-23	30.43	hypothetical protein KFL_000810300 [Klebsormidium ...	[more]
XP_002896704.1	5.500e-23	31.52	conserved hypothetical protein [Phytophthora infes...	[more]
XP_010256144.1	5.500e-23	28.88	PREDICTED: ER membrane protein complex subunit 2-A...	[more]
XP_013625657.1	5.500e-23	29.58	PREDICTED: ER membrane protein complex subunit 2-l...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL109	nonsL109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL106	nonsL106	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR083	ncniR083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR141	ngnoR141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR139	ngnoR139	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008850	NSK008850	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO08G01710.1	NO08G01710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582383	gene_3499	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100001g90	gene3873	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO08G01710.1	NO08G01710.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO08G01710 ID=NO08G01710|Name=NO08G01710|organism=Nannochloropsis oceanica|type=gene|length=3158bp
AAAAGGCATATCTCGCGATATCTCCTGAATATGTATATCTTTAATTTCCA
CTTCCTTCTCCATTCAACATCGCCCTTATGCTACATCACCTCCTCCCCCT
CACACTCTCCTTCCCCCCCTCCCCCCACCCAGTAATCCGCAATCCCCAAG
GCAACCACACAACTCTCCCTCACCACCACCTCCCCATCCTGCATAAACTT
TGCCAAGATTGTCTCACACTCCTCTCCCCCCACAGCTCCCAGCGCCTCAG
CCGCCTCATGCCTCACCATCCTATGCTCTTGCTCGTTCTCCAACACCAAC
TTCAGTGCAGGGACTGATGCTGGGTTCTGCATCTGCCCGAACACGTACGC
AACCTCATGCCGAAACAATGGGCTCGAATCCCTGAAGCCCTCCGCCAGCG
CTGCCACTGCCTCAGTCGTATTCCGATTCCGCAAGGAGAACATGGCACGG
TATCGAGTAAAGAGAGGCAATGAAGGGTCGAGCAAACGGGCCTGAAGCTC
CGCTGTGCTCAAATCCTGCCTGTCTGCCGGAGCGGGGTCCACGGACAAAT
ACGGGCTCTTATCCAATGATCCCTCTTGTTGTCGTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGGTGCCATCGGATCAGGTCGAGGGACAGACGGCA
TGTGTCGGCCACCTCAGGCACAGGGTCTTGGGCGTATTTCTCCAGAACCG
ACACTGACTCCGGCTCTGCAATCGCACCCAGTGCTTCGGCTGCCTCGTGC
CGCACCATCGAGTCGTCGCGTTCGTCCGACAGCACTGCCACGAGCGTAGG
GCAGGCGGCCCGGTCCCGAATCTGGCCCAGGACGTATGCGAGCTCATGTC
GGAGCAAGGCAGAGTCTTGCTTGTTCCGCAAGGCCTCACCAATGGCGGCG
ACGGCCTCGGAGCCTCCATCGGTACGCAGAACAAAGGCAGCGTGGGTACG
CTTTTGGATTGGCTGCTGCACGTCGACCAGGCAGTCGCGAAGAGCCGCCA
CGTTTGGAGCCATTGGAGGATAGGATAGGAGCTGTAATCCAGGGTGTGGA
GGTCAGTGGTGAGCAAGAGAACGTTTGTGAGCGCGCAAATGGACCAACTA
ACCATGTCGTATTTGTTAAGACGTAGATGAGGTGGTCACTGTAATCATGT
CCCTTGTGCATGGCCAGGGACACGGGAGGCCCGCCGGCCTGCCTCCTCGC
TGATAATATAACACTTACAACAGAGAAGGCCCTCCGAGGGGGAGTCCTTC
TTGCCTTCGTCGCCATCATCACGCCTTTGGCCACAGCTTCTGATTGCACC
TACACTACACAACAAAAAGCAGACATAGCATGGAAGGTCTCGACCAAGTG
CTGAAGCAGGGCGACTCGACGGCAGTCCTAAAGTACATACGGCATCATAG
Ggtacgttaataattcatcccctcccgctcgaagttccaccattacatgc
gctgcaacgtcctcccttacgccgccacccatcaacaccacctttagATT
CGTGCATCGACAGAAGTCGTGCAGCATGGGCGAGATTTTGTCATGGAGGG
CAAGGGGAGCAGCCTGGGGGACGAAGgtaggatgagggtctcaagtgggc
aggcttggaggaaggggggaagtgtgacaatttaagtgtgacaatttctg
cttaattgtcctaaacatcccgacctcacaaatgcacagCTTGGCCCGTG
TACGAGCAGGTTTTCCTGGCGGCCTTGGACCTTGGTGAGACGCTGCTGGC
AGAGgtcagtggtgcacgtgagaaaagctctcccttctccagtcttttca
ccccacttttccccgctcgcacaacagACTTCGCTGAGACTTCTACAAAA
GAAATTCCCGGATAGCGCACGGGTTGGACGATTGGAGGGGATGATATGCG
AGGCAGAGGGAGATTTTGAACAGGCTGCAAAGGTGTATCTGGATCTGCGG
GAGCGATACCCTACGGACCCGgtgagttttctttacttggagtgtcagtt
gccgtgggcagaagtaggcgtttcctcctgatttcattgttacagttaaa
gttttctttgtaccgctctcgaggaatttcctcattcgtccctcccccat
caaaacagGTGGTATGGAAGCGGTGGGTGGCTTTGGCCAAGGCCGAGGGG
GACTTGCCCGAGGCGATAAAGCGCTGCAACGAGTATCTCAAGGTCTTCCA
GGGCGACACTAGCGCGgtgagttcgaaaagaaggatgatgatgaaaacgc
aaggagggggcgatgggaatattttgtgcgcttgctggctggaaggcgtc
tcacgcgtcggcaatttttaatttgggagtaaaagagtgtgagggtaatc
aaacggctgcgcatgtatgctttcctcacgagaatctgcgctatatatat
caactcaagtttcatcatacgtacattcgtttccaatcccattattatta
gTGGCAAGAGCTGGCTGCTTTATATGTTCGGACAGGCCACTTACACGAAG
CCGCTTTTTGTTACGAGGAGCTTGTTCTCTGCAGCCCAGCCAATTTTGCC
TTTCACGTTGCATTGGCCGAGGCGTATGTGGGAATAGGCGGAGGCGAATC
TTTGAGGCTAGCACGGAAGCATTACGCGCAGGCGATGGAGTTGCATGGGG
GGGATGATAATTTGCGAGCCCTGTACGGAATGTGTGCGgtgagtctgaga
aagagaggggaatggggagaggttggtagaggaacttgcttggatgcctc
cttcctacttatcgaagctcgttgacgccaagctaggattgtcctccttc
tttcaattctgcctccgtgttgtcctcaaaagcgcttcccccctcttttc
cctttttccttcccttccctactgtcacccccagACATGCCACGCCCTGG
CCCGCAGCAGCAGCAGCGCAAGCGACGAAACAGACAGCCGTGTCAATGCT
GCCCTTTTCAATCTGGCGGGGGACAAGCTCAAGGAACACTACACACGGGC
TAACCCTGCCCTCTTCCCCTTCGTTGAAGCCACGCTTTCCCGGCAAGCCG
CGGATGTGTGTTAGTGACCGCATAGATGTAGAAATGCCTGCGAGAACAAT
TCAGACAAGGAGAAAGGGAAATGAAGAAAGAAACAAAAATGAAATTCGTT
AGTTTTGG

protein sequence of NO08G01710.1

>NO08G01710.1-protein ID=NO08G01710.1-protein|Name=NO08G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MEGLDQVLKQGDSTAVLKYIRHHRIRASTEVVQHGRDFVMEGKGSSLGDE
AWPVYEQVFLAALDLGETLLAETSLRLLQKKFPDSARVGRLEGMICEAEG
DFEQAAKVYLDLRERYPTDPVVWKRWVALAKAEGDLPEAIKRCNEYLKVF
QGDTSAWQELAALYVRTGHLHEAAFCYEELVLCSPANFAFHVALAEAYVG
IGGGESLRLARKHYAQAMELHGGDDNLRALYGMCATCHALARSSSSASDE
TDSRVNAALFNLAGDKLKEHYTRANPALFPFVEATLSRQAADVC*

Synonyms

Publications