NO08G01690, NO08G01690 (gene) Nannochloropsis oceanica

Overview
NameNO08G01690
Unique NameNO08G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length618
Alignment locationchr8:531529..532146 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:531529..532146 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G01690 vs. NCBI_GenBank
Match: EWM26707.1 (hypothetical protein Naga_100001g92 [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 4.300e-51
Identity = 117/196 (59.69%), Postives = 141/196 (71.94%), Query Frame = 0
Query:    7 ILFVSTAAVQAFQPPSFFLARAR--TRDASMTMRRVTPHGADTSDRRSLIQNQIFLLGGSAAIMSYLPSAVKADSTGKYSTKQTAKKRYLPRVRRGVALFAALGKTLDKPETIQAFCMYVDDNMGTAMALYGSSTRIGELPDPKSRTVDKEVEDFVKEIKALAKGGDVNATYERAKASLIAYLAGTKLEPLGDVAY 201
            +L     AVQAF  PSF   +     R  ++T+         T+DRR  I++Q+ L G  A +++  P    ADSTGKYSTKQTAKKRYLPRVR+GVA F ALG+TLD PETI+AF  YV+D++  A+ALYGSSTRIGELPDPKSRTV+KE EDFVKE+ A+AKGGDV A+YE AK +L AYLAGTKLEPL D  Y
Sbjct:    7 LLLAMATAVQAFW-PSFIAVKQSFCRRKEALTLCAF----KGTADRRDHIRSQVALGGLGALLLAANPPLALADSTGKYSTKQTAKKRYLPRVRKGVAKFQALGETLDNPETIKAFNQYVEDSLAAALALYGSSTRIGELPDPKSRTVEKEAEDFVKEVNAMAKGGDVKASYEGAKTALAAYLAGTKLEPLSDPVY 197          
BLAST of NO08G01690 vs. NCBI_GenBank
Match: CBN74262.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.5 bits (223), Expect = 6.500e-15
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 0
Query:   75 VKADSTGKYSTKQTAKKRYLPRVRRGVALFAALGKTLDKPETIQAFCMYVD--DNMGTAMALYGSSTRIGELPDPKSRTVDKEVEDFVKEIKALA-----KGGDVNAT--YERAKASLIAYLAGTKLEPLGDVAYN 202
            V ADSTGKYS+K TA+KRYLPR+ + V  F  L K +           +VD   +  +AM LYGSS + GE PD KSR + +  +DF     ++      KGG+  A+  Y++A + L+ YL G +L+PLG   YN
Sbjct:  115 VFADSTGKYSSKATARKRYLPRIVKLVNAFQMLKKDIASGSASPKSEFFVDVLADSVSAMDLYGSSMKKGETPDSKSRALQQLAQDFGSTCTSIGKSLGKKGGEEEASKAYDKASSILVKYLEGVELDPLGSDVYN 250          
BLAST of NO08G01690 vs. NCBI_GenBank
Match: XP_005832091.1 (hypothetical protein GUITHDRAFT_109155 [Guillardia theta CCMP2712] >EKX45111.1 hypothetical protein GUITHDRAFT_109155 [Guillardia theta CCMP2712])

HSP 1 Score: 69.3 bits (168), Expect = 1.600e-8
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   71 LPSAVKADSTGKYSTKQTAKKRYLPRVRRGVALFAALGKTLDKPETIQAFCMYVDDNMGTAMALYGSSTRIGELPDPKSRTVDKEVEDFVKEIKALAKGGDVNATYERAKASLIAY 187
            LP+   ADSTGK+S+K+TAK RY+PRV++G+ +   +       E +    + ++ +M  AM LYG + +  E+PD  S  ++K+ E F + IKA     D+     + KAS   Y
Sbjct:   32 LPTYAFADSTGKFSSKRTAKNRYVPRVKKGLEIMDGIESGRATIEQL----LEIEPDMVNAMKLYGDAQKKSEVPDKISIRLNKDAEAFSQAIKAAGSNADI----AKVKASWQTY 139          
BLAST of NO08G01690 vs. NCBI_GenBank
Match: CEL93463.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 68.6 bits (166), Expect = 2.700e-8
Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 0
Query:   66 AIMSYLPSAVKADSTGKYSTKQTAKKRYLPRVRRGVALFAALGKTLDKP--ETIQAFCMYVDDNMGTAMALYGS-STRIGELPDPKSRTVDKEVEDFVK---EIKALAKGGDVNA---TYERAKASLIAYLAGTKLEPLGDVAY 201
            A+++       ADSTG+YS+  TAKKRYLPR+ RG++ FA+L   ++    + +  F      +M  A+ LY + + + GE  D KS       ++F K   E+++  K  D  A    Y  A+  L +YL+  +L P+GD  Y
Sbjct:   72 AVLTAASLPAVADSTGRYSSIATAKKRYLPRINRGISEFASLKGEVNGGGFDGVSTFLTSRAPDMVAALDLYATGALKKGEYLDKKSLGAKGAADEFTKHVDEMRSAVKAKDKEALKTAYLAAEEDLTSYLSIGELPPIGDATY 215          
The following BLAST results are available for this feature:
BLAST of NO08G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM26707.14.300e-5159.69hypothetical protein Naga_100001g92 [Nannochlorops... [more]
CBN74262.16.500e-1541.18expressed unknown protein [Ectocarpus siliculosus][more]
XP_005832091.11.600e-835.34hypothetical protein GUITHDRAFT_109155 [Guillardia... [more]
CEL93463.12.700e-833.33unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL106nonsL106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR139ngnoR139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008847NSK008847Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01690.1NO08G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582374gene_3497Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g92gene3871Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01690.1NO08G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01690 ID=NO08G01690|Name=NO08G01690|organism=Nannochloropsis oceanica|type=gene|length=618bp
ATGAAGGTTTTGCTTGGTATCCTATTTGTGAGCACGGCTGCTGTCCAGGC
CTTCCAGCCTCCATCGTTCTTCCTTGCACGTGCCCGCACTCGGGACGCTT
CAATGACCATGCGGCGGGTTACCCCCCATGGCGCTGACACATCTGACCGC
CGCAGTTTGATCCAGAACCAGATATTTCTGCTTGGTGGTAGTGCTGCTAT
AATGAGCTATTTGCCCTCGGCTGTCAAAGCGGATTCCACGGGCAAATATA
GCACGAAACAAACGGCCAAGAAGCGCTACTTGCCTCGCGTGCGCAGAGGC
GTGGCTCTGTTCGCCGCCTTGGGCAAGACGCTGGACAAGCCCGAGACAAT
TCAAGCTTTCTGTATGTACGTAGACGACAACATGGGTACTGCCATGGCAT
TGTACGGTTCCTCCACGCGCATCGGTGAGTTGCCTGACCCCAAGTCCCGC
ACGGTCGATAAGGAGGTGGAAGACTTTGTGAAGGAAATCAAGGCGCTTGC
CAAGGGCGGGGATGTCAATGCAACATACGAGCGTGCCAAGGCTAGCCTTA
TTGCTTATCTGGCTGGTACCAAGCTGGAGCCGTTGGGGGACGTGGCATAT
AATACAACCTCTCTATGA
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protein sequence of NO08G01690.1

>NO08G01690.1-protein ID=NO08G01690.1-protein|Name=NO08G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKVLLGILFVSTAAVQAFQPPSFFLARARTRDASMTMRRVTPHGADTSDR
RSLIQNQIFLLGGSAAIMSYLPSAVKADSTGKYSTKQTAKKRYLPRVRRG
VALFAALGKTLDKPETIQAFCMYVDDNMGTAMALYGSSTRIGELPDPKSR
TVDKEVEDFVKEIKALAKGGDVNATYERAKASLIAYLAGTKLEPLGDVAY
NTTSL*
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Synonyms
Publications