NO08G01580, NO08G01580 (gene) Nannochloropsis oceanica

Overview
NameNO08G01580
Unique NameNO08G01580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1830
Alignment locationchr8:497447..499276 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:497447..499276 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027379CLS_N
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G01580 vs. NCBI_GenBank
Match: EWM26673.1 (hypothetical protein Naga_100001g60 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 2.100e-22
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 0 
Query:    5 DLKALTMDFTMIGAFVLAVNGCALYTLQRVIKRIIPRIFWALVILCLPVLGALIFFFIRPRDPMKSLEDDEFEEPEFEIVSPRICTLGDKTSS---PTTPCIIRNLSIPPLKTPEGAFSSSANFMYAPSS 132
            D KAL MD  MI AF+LAVNGCALYTL+RV  +   R+FWA VILC+P+ GALIFFF RPRDP+K   DD   E +   ++P    +  K  S   PTTP ++   +   +K+P+G   S    MYAPSS
Sbjct:    5 DEKALRMDVAMIVAFILAVNGCALYTLKRVRSQPGSRLFWAAVILCVPIGGALIFFFFRPRDPIKYFTDDSIPEKKVGQITPVDVPIDKKLPSMTPPTTPTLLHRFAAHAIKSPDGTLESPC-IMYAPSS 133
The following BLAST results are available for this feature:
BLAST of NO08G01580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26673.12.100e-2250.00hypothetical protein Naga_100001g60 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008890NSK008890Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01580.1NO08G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582328gene_3485Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g60gene3899Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01580.1NO08G01580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01580 ID=NO08G01580|Name=NO08G01580|organism=Nannochloropsis oceanica|type=gene|length=1830bp
AAATTTAATTTACACTCGCCGTTGAGAAGACTGTACCGTTTAATAATGGC
ACCAAAGGAAGCAGAAGAAGGTATCACGGGGCGAGAGATGTAGATATACC
CGGTGCACGACGCTCAATGTTGTGGTGCTTTGGGACAATGTCCTGGTCGG
TATAGGAGCCTTGGACGCTTCTAGTGCCATTCACCCCCACGTCTTATCCC
CTGATAATTGGCGCCGCTTCCCATCCCACGCCCTTGTGTCAATACCCGAA
GATAAATGGCCTCTTGTCTTCTGCTCTCTCTCCCGCTCTCTCACACACTC
TATCCCCTTTGATCATGTGACTCCATCCCTATCCGTAACTAAGAATGTCC
CCATTCACCCTTCTGGCGTCCCTGCCGAGTTCCGATCTGTGATCTGGGCT
GTCGACCGCCCTGCTATGCCAGCGCGAGCACTCTTGCACTAACGCGTTGT
GCACCACAAACTCCACAAGTTCCTCAATCACGCAGTGCATGGACAGTTTC
CTCATGGTCTCATCCCCTCTCTATATACACACGACATAGGGTTTGGGGTC
TGGGAGAGGGAGAAAGCGTGTCACGGGGCGAACACCTTCCACTCGTTTGA
GTTGGGTACCCGGGCACAGCTTCGACACGACGACAACAGCAACGACGACA
AAAACTGGTAGTCGCTAGCTACTAAATAAAATAAACCAGAACCATGGGGA
CTCCTGACCTAAAGGCACTGACAATGGACTTCACGATGATTGGGGCCTTC
GTGTTGGCAGTGAACGGATGCGCACTCTACACATTGCAGCGAGTCATCAA
AAGAATTATTCCTCGGATCTTCTGGGCATTAGTGATCTTGTGCTTGCCCG
TCCTGGGTGCATTGATCTTCTTCTTCATCCGGCCTCGGGACCCGATGAAG
TCTCTGGAGGATGACGAATTCGAAGAGCCAGAGTTCGAAATAGTGTCCCC
GAGGATCTGTACTTTGGGAGATAAAACAAGCTCGCCTACCACGCCTTGTA
TCATTCGTAACCTGTCTATACCGCCACTTAAAACCCCTGAGGGCGCCTTC
TCGTCGAGCGCGAACTTCATGTATGCGCCGTCAAGTTAGAGAGGGGAGAA
TGAAAGAGTGGTCGGGAAGGGGAGGGAGTGGGAGTTAGGATGACACTCTG
ACAGTGGATGGTCTTTGTGGTGGCATTAAGGACAAGTAAAGGAGCAAGAA
ATGTTCGTGGGAAGGCGGATAGGTGGACAGGAAGGATGTTGGAAAGGCGG
GTGGGTTGGGGTTTAATGCGGAGGAAGAGCTGATAAGAAAACAAATGTAG
CCCAGGTGGACAAAGAATCCTCCTGCTACTGCTCGTATGGCTGTTGCTCC
GAGTGAGCTGAGGAGAAAAGGTGCTAGAAAGAGTAAGGAAAAGGTAGTGG
AATAGAGAATGAGAGGAAGAGATTAAGAGAGAAAAAGCAGTATGAGATGT
AGAGAGGAGGGAGGGAGGAGACAATAACGGCTCTATAAGTTTGACTCACG
AATATCTTCATGCACAAATATATATACACATGTATATGTATATACAAATG
AAGATGTAAATATACATATAGATATGTATGTGTGTTCGTGGCGTCGGGTG
TATAGAGAGCACTGGACCGCGGACTCTGACTAGTCAATAAGGCTCAGAGA
GCAAGAAGACAAAGAGAGAGAGCAGGAGGGGGAGAGAGAGAATAATAAAC
CAACACGGTTCAGTCATCAAAATCGTTTGTTCCGCAGTTAACCTTAAGAA
CTTTCGTATACAGAATTAAAGAAAAGAAATTACATAATTAGGCCTAGAAG
AGCGTTACACCATACACCACATGTTTTGGT
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protein sequence of NO08G01580.1

>NO08G01580.1-protein ID=NO08G01580.1-protein|Name=NO08G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MGTPDLKALTMDFTMIGAFVLAVNGCALYTLQRVIKRIIPRIFWALVILC
LPVLGALIFFFIRPRDPMKSLEDDEFEEPEFEIVSPRICTLGDKTSSPTT
PCIIRNLSIPPLKTPEGAFSSSANFMYAPSS*
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Synonyms
Publications