NO08G01550, NO08G01550 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G01550
Unique Name	NO08G01550
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1456
Alignment location	chr8:485481..486936 -

Link to JBrowse

Properties


Property Name	Value
Description	Centrin

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:485481..486936 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR002048	EF_hand_dom

Homology

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: EWM26578.1 (centrin [Nannochloropsis gaditana])

HSP 1 Score: 243.0 bits (619), Expect = 7.900e-61
Identity = 126/162 (77.78%), Postives = 144/162 (88.89%), Query Frame = 0

Query:   44 SKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            S   + K K +  L+EEQRQEIKEAF+LFDTEGTG IDSKELR+AMRALGFEP+KEEV RL A+A D D SG+I+YK FVE+M VK+GEKDGREEM KAFRLFDAGEKG ISFQDL+RVARELGES+TDEELQEMIDEADRDGDGL++EE+FMRIMKK++LF
Sbjct:    2 SYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRL-AAAXDDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_001351001.1 (centrin-1 [Plasmodium falciparum 3D7] >XP_018643909.1 centrin-1 [Plasmodium gaboni] >CAD49029.1 centrin-1 [Plasmodium falciparum 3D7] >ETW39243.1 centrin-1 [Plasmodium falciparum Tanzania (2000708)] >EUR82504.1 centrin-1 [Plasmodium falciparum 7G8] >CDO62167.1 centrin-1 [Plasmodium reichenowi] >KOB58602.1 caltractin [Plasmodium falciparum HB3] >KYO03715.1 centrin-1 [Plasmodium gaboni] >PKC48062.1 centrin-1 [Plasmodium falciparum NF54] >SOV10120.1 centrin-1 [Plasmodium gaboni] >SOV20512.1 centrin-1 [Plasmodium sp. DRC-Itaito] >SOV73600.1 centrin-1 [Plasmodium sp. gorilla clade G3] >SOV74922.1 centrin-1 [Plasmodium reichenowi] >SOS76096.1 centrin-1 [Plasmodium sp. gorilla clade G1])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0

Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: SBT30659.1 (centrin-1, putative (CEN1) [Plasmodium ovale wallikeri] >SBT31295.1 centrin-1, putative (CEN1) [Plasmodium ovale wallikeri])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0

Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   14 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 161

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: SBT75303.1 (centrin-1, putative [Plasmodium ovale] >SCA48234.1 centrin-1, putative [Plasmodium ovale])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0

Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: GAW79106.1 (centrin-1 [Plasmodium gonderi])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0

Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_002257736.1 (centrin, putative [Plasmodium knowlesi strain H] >XP_019912703.1 Centrin [Plasmodium coatneyi] >CAQ38072.1 centrin, putative [Plasmodium knowlesi strain H] >ANQ06008.1 Centrin [Plasmodium coatneyi] >SBO28315.1 centrin-1, putative [Plasmodium knowlesi strain H] >SBO25574.1 centrin-1, putative [Plasmodium knowlesi strain H] >OTN66220.1 putative Centrin [Plasmodium knowlesi])

HSP 1 Score: 202.6 bits (514), Expect = 1.200e-48
Identity = 105/163 (64.42%), Postives = 135/163 (82.82%), Query Frame = 0

Query:   43 SSKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            SS A S + +    L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   11 SSNARSKRNE----LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_001613559.1 (centrin, putative [Plasmodium vivax] >XP_008818696.1 caltractin [Plasmodium inui San Antonio 1] >XP_012334125.1 caltractin [Plasmodium fragile] >EDL43832.1 centrin, putative [Plasmodium vivax] >EUD64756.1 caltractin [Plasmodium inui San Antonio 1] >KJP89186.1 caltractin [Plasmodium fragile] >KMZ82841.1 caltractin [Plasmodium vivax India VII] >KMZ89231.1 caltractin [Plasmodium vivax Brazil I] >KMZ95553.1 caltractin [Plasmodium vivax Mauritania I] >KNA02091.1 caltractin [Plasmodium vivax North Korean] >SCO65130.1 centrin-1, putative [Plasmodium vivax] >SCO70623.1 centrin-1, putative [Plasmodium vivax] >SGX75354.1 centrin-1, putative [Plasmodium vivax])

HSP 1 Score: 202.6 bits (514), Expect = 1.200e-48
Identity = 105/163 (64.42%), Postives = 135/163 (82.82%), Query Frame = 0

Query:   43 SSKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            SS A S + +    L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   11 SSNARSKRNE----LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_004220568.1 (centrin [Plasmodium cynomolgi strain B] >GAB64601.1 centrin [Plasmodium cynomolgi strain B])

HSP 1 Score: 202.6 bits (514), Expect = 1.200e-48
Identity = 105/163 (64.42%), Postives = 135/163 (82.82%), Query Frame = 0

Query:   43 SSKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            SS A S + +    L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   11 SSNARSKRNE----LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_022811356.1 (centrin, putative [Plasmodium yoelii] >ETB60668.1 caltractin [Plasmodium yoelii 17X] >CDU16091.1 centrin, putative [Plasmodium yoelii] >CDZ10610.1 centrin, putative [Plasmodium yoelii])

HSP 1 Score: 202.2 bits (513), Expect = 1.500e-48
Identity = 100/149 (67.11%), Postives = 129/149 (86.58%), Query Frame = 0

Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L++EQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNDEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168

[Close]

BLAST of NO08G01550 vs. NCBI_GenBank
Match: SCL90075.1 (centrin-1, putative [Plasmodium berghei] >SCN21857.1 centrin-1, putative [Plasmodium berghei] >SCM15213.1 centrin-1, putative [Plasmodium berghei] >SCM17008.1 centrin-1, putative [Plasmodium berghei])

HSP 1 Score: 202.2 bits (513), Expect = 1.500e-48
Identity = 100/149 (67.11%), Postives = 129/149 (86.58%), Query Frame = 0

Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L++EQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   14 LNDEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 161

The following BLAST results are available for this feature:

BLAST of NO08G01550 vs. NCBI_GenBank

BLAST of NO08G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26578.1	7.900e-61	77.78	centrin [Nannochloropsis gaditana]	[more]
XP_001351001.1	6.900e-49	67.79	centrin-1 [Plasmodium falciparum 3D7] >XP_01864390...	[more]
SBT30659.1	6.900e-49	67.79	centrin-1, putative (CEN1) [Plasmodium ovale walli...	[more]
SBT75303.1	6.900e-49	67.79	centrin-1, putative [Plasmodium ovale] >SCA48234.1...	[more]
GAW79106.1	6.900e-49	67.79	centrin-1 [Plasmodium gonderi]	[more]
XP_002257736.1	1.200e-48	64.42	centrin, putative [Plasmodium knowlesi strain H] >...	[more]
XP_001613559.1	1.200e-48	64.42	centrin, putative [Plasmodium vivax] >XP_008818696...	[more]
XP_004220568.1	1.200e-48	64.42	centrin [Plasmodium cynomolgi strain B] >GAB64601....	[more]
XP_022811356.1	1.500e-48	67.11	centrin, putative [Plasmodium yoelii] >ETB60668.1 ...	[more]
SCL90075.1	1.500e-48	67.11	centrin-1, putative [Plasmodium berghei] >SCN21857...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR083	ncniR083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR141	ngnoR141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO08G01550.1	NO08G01550.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582309	gene_3482	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Centrin	gene3902	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO08G01550.1	NO08G01550.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO08G01550 ID=NO08G01550|Name=NO08G01550|organism=Nannochloropsis oceanica|type=gene|length=1456bp
CTCAGGGCAGTAGTGATTGACTGTGTCGTCCAGTGGGTATGTTTAAGTAT
CGTCCAGTGGGTATGTTTTTGCGTAGAGCAACGGTGGGGTGCGCCAACGA
CGCAAGCAAATGTGCCCGAAGACATACAGCCTGGACAAGCACGAATGAGA
TAAAGGCAAGTCTCCTCAGGTAGAGACAACAAACACGTATGCATTTACAC
AATAGCCAAATGCCACTTTCACTTCCAGGAGCCTAGACTGCTCGTGCATG
CACGATCGCTCTTTTCTTCTCTTCTTTTCCGAAAGAGTCTGCGTTTCTCA
ACGAGAACACACCACTTGACAAATGTTTCGTCCTTCGCACCCTCTTTTTT
TCCCATATCCCCTTCCAGACTGCACTCGTGGCAAGGTAGGAATAGCATGC
AATACATAAACCACCGCATGCAGGAGTCAAAGGCAGAAAAAAAAACTCAT
GACCTCTGCGTCATCCCGTCATGCTCATCATCACCCTCCCCACCCCTTCG
CAGGCATACCGCAGAACAAGCAACAGCAACAGTCACGCTCTATACCAGCC
CAGTCTTACTTTCACACAAGAAGCTTCTCGACATCTTGAAATGGCGTCGA
GCAAAGCTACCTCCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAG
CAGCGACAAGAAATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCAC
GGGGCATATTGACAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTT
TTGAGCCCAGAAAGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGAC
GGAGACGAAAGTGGCAGCATCTCATACAAACATTTTGTGGAAATTATGGC
AGTCAAACTGGGAGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTC
GATTATTTGATGCGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAG
CGAGTGGCCCGGGAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGA
GATGATTGgtacgtttgaagggaaggatgggagaaagttggggtatgaac
ggattttttgtaaaagcgctaggtagggttcgaggaacatacatgaattt
tccttttcgacgaatgaaattaagcatggctttgtgatgaatgagagagg
agaggaatgacatttctatcttcattttacttcatacattttcttacctt
tttcttcccctcctgtttttcctttcccttttctcttaccagATGAGGCG
GACCGGGACGGCGACGGGCTCATCAACGAGGAGGAATTTATGCGGATCAT
GAAGAAGTCAAGCTTGTTTTAAAAGTAGGAAGGAAGGAGGGAGATGAGAC
GGTCGGCCCCCAAGGGGACGTTTGGACAGACAGCGGGAAATCCATTTACA
AACAGCATGTGTATATGTCTTTTCAATCAATAAAGAAGAATGCTGATTCA
GGGACC

protein sequence of NO08G01550.1

>NO08G01550.1-protein ID=NO08G01550.1-protein|Name=NO08G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MLIITLPTPSQAYRRTSNSNSHALYQPSLTFTQEASRHLEMASSKATSSK
GKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEE
VARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGE
KGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMK
KSSLF*

Synonyms

Publications