NO08G01380, NO08G01380 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G01380 vs. NCBI_GenBank
Match: EWM26627.1 (double-strand-break repair protein rad21 [Nannochloropsis gaditana]) HSP 1 Score: 165.2 bits (417), Expect = 7.900e-37 Identity = 96/157 (61.15%), Postives = 110/157 (70.06%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPGAAS------NLDPLGAGFTPLSTCSTVASGGAAIAGTPGQQLEFQGEGMMTRKGKEREGGIGRG 152 M YAQLILGKKG+LGKVWLAV SEKKLNR +IF TD+TKSAD+IAN KGE +PLRVSGSLLLGVVRIYSHKVRYLSTDCD+AL+K+KVAFRP A S ++ PL TP +C+ + GA +L TRK REGG G Sbjct: 1 MLYAQLILGKKGTLGKVWLAVQSEKKLNRQLIFQTDLTKSADKIANPKGEVLPLRVSGSLLLGVVRIYSHKVRYLSTDCDDALAKMKVAFRPDALSQDIFPTSVQPL----TPHISCAPSTTVGAVPGNGSCVRLR------TTRKLPGREGGRQEG 147 HSP 2 Score: 122.1 bits (305), Expect = 7.700e-24 Identity = 60/121 (49.59%), Postives = 75/121 (61.98%), Query Frame = 0 Query: 656 RTNDMGIAAAAGDDNIFGEKAATQWHPNTVRFCKLLRTRMAAVEXXXXXXXXXXXXXXXXXXXXXXXXXITRNSRRTKAANLFWEVLQLKTWDFIECAQETAYGEVVIRPAARFHEPTPGE 777 RTN G + +D++ K +T+WHPNTV C+LLR+R+AA +TRN+RRTKAAN+FWEVLQLKTWDFI+C QE AYGE++I PAAR HE PGE Sbjct: 247 RTNAWG-SPVGEEDDVAEAKPSTRWHPNTVHMCRLLRSRLAAA---ARLQEEGGGNGSGPASSQLTFGELTRNARRTKAANMFWEVLQLKTWDFIDCGQEEAYGEIIIEPAARLHEAIPGE 363
BLAST of NO08G01380 vs. NCBI_GenBank
Match: CCI46618.1 (unnamed protein product [Albugo candida] >CCI43090.1 unnamed protein product [Albugo candida]) HSP 1 Score: 119.4 bits (298), Expect = 5.000e-23 Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPG 94 MFY+Q+IL KKG LGK+WLA H +KKLN++ IF+ D+ S D I N + + LRVSG LLLGVVRIYS KV+YL +DC EAL KIK+AFRPG Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQ-VPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRPG 92
BLAST of NO08G01380 vs. NCBI_GenBank
Match: GAY00188.1 (Hypothetical protein PINS_008026 [Pythium insidiosum]) HSP 1 Score: 119.0 bits (297), Expect = 6.500e-23 Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPG 94 MFY+Q+IL KKG LGK+WLA H +KKLN+ IF+ D+ S D I N + + LRVSG LLLGVVRIYS KV+YL +DC EAL KIK+AFRPG Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIQSSVDSIVNPQ-VPLALRVSGHLLLGVVRIYSRKVKYLFSDCSEALVKIKLAFRPG 92
BLAST of NO08G01380 vs. NCBI_GenBank
Match: POM64421.1 (Double-strand-break repair protein rad21 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 118.6 bits (296), Expect = 8.500e-23 Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPGA 95 MFY+Q+IL KKG LGK+WLA H +KKLN+ IF+ D+ S + I N + + LRV+G LLLGVVRIYS KV+YL TDC EAL KIK+AFRPGA Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHTSVENIMNPQ-VPLALRVTGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRPGA 93
BLAST of NO08G01380 vs. NCBI_GenBank
Match: POM78934.1 (Double-strand-break repair protein rad21 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 118.6 bits (296), Expect = 8.500e-23 Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPGA 95 MFY+Q+IL KKG LGK+WLA H +KKLN+ IF+ D+ S + I N + + LRV+G LLLGVVRIYS KV+YL TDC EAL KIK+AFRPGA Sbjct: 185 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHTSVENIMNPQ-VPLALRVTGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRPGA 277
BLAST of NO08G01380 vs. NCBI_GenBank
Match: CCA18311.1 (doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14] >CCA18416.1 doublestrandbreak repair protein rad21 putative [Albugo laibachii Nc14]) HSP 1 Score: 118.2 bits (295), Expect = 1.100e-22 Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPG 94 MFY+Q+IL KKG LGK+WLA H +KKLN++ IF+ D+ S D I N + + LRV+G LLLGVVRIYS KV+YL +DC EAL KIK+AFRPG Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKHQIFTADIQSSVDSIVNPQ-VPLALRVTGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRPG 92
BLAST of NO08G01380 vs. NCBI_GenBank
Match: XP_009533423.1 (hypothetical protein PHYSODRAFT_519994 [Phytophthora sojae] >EGZ10678.1 hypothetical protein PHYSODRAFT_519994 [Phytophthora sojae]) HSP 1 Score: 117.5 bits (293), Expect = 1.900e-22 Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPG 94 MFY+Q+IL KKG LGK+WLA H +KKLN+ IFS D+ S I N + + LRVSG LLLGVVRIYS KV+YL +DC EAL KIK+AFRPG Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFSADIHSSVQSIVNPQ-VPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKLAFRPG 92
BLAST of NO08G01380 vs. NCBI_GenBank
Match: XP_002902993.1 (double-strand-break repair protein rad21 [Phytophthora infestans T30-4] >EEY56163.1 double-strand-break repair protein rad21 [Phytophthora infestans T30-4]) HSP 1 Score: 117.5 bits (293), Expect = 1.900e-22 Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPG 94 MFY+Q+IL KKG LGK+WLA H +KKLN+ IF+ D+ S I N + + LRVSG LLLGVVRIYS KV+YL TDC EAL KIK+AFRPG Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQ-VPLALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRPG 92
BLAST of NO08G01380 vs. NCBI_GenBank
Match: GAX96148.1 (Hypothetical protein PINS_004039 [Pythium insidiosum]) HSP 1 Score: 117.5 bits (293), Expect = 1.900e-22 Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPG 94 MFY+Q+IL KKG LGK+WLA H +KKLN+ IF+ D+ S D I N + + LRVSG LLLGVVRIYS V+YL +DC EAL KIK+AFRPG Sbjct: 1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQXIFTADIQSSVDSIVNPQ-VPLALRVSGHLLLGVVRIYSRXVKYLFSDCSEALVKIKLAFRPG 92
BLAST of NO08G01380 vs. NCBI_GenBank
Match: ETI31600.1 (hypothetical protein F443_21455 [Phytophthora parasitica P1569] >ETL78631.1 hypothetical protein L917_20595 [Phytophthora parasitica] >ETM31892.1 hypothetical protein L914_20613 [Phytophthora parasitica] >ETO60318.1 hypothetical protein F444_21473 [Phytophthora parasitica P1976]) HSP 1 Score: 117.1 bits (292), Expect = 2.500e-22 Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 0 Query: 1 MFYAQLILGKKGSLGKVWLAVHSEKKLNRNIIFSTDVTKSADRIANHKGEAMPLRVSGSLLLGVVRIYSHKVRYLSTDCDEALSKIKVAFRPG 94 MFY+Q++L KKG LGK+WLA H +KKLN+ IF+ D+ S I N + + LRVSG LLLGVVRIYS KV+YL TDC EAL KIK+AFRPG Sbjct: 1 MFYSQIVLAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSVQSILNPQ-VPLALRVSGHLLLGVVRIYSRKVKYLYTDCSEALVKIKLAFRPG 92 The following BLAST results are available for this feature:
BLAST of NO08G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G01380 ID=NO08G01380|Name=NO08G01380|organism=Nannochloropsis oceanica|type=gene|length=3975bpback to top protein sequence of NO08G01380.1 >NO08G01380.1-protein ID=NO08G01380.1-protein|Name=NO08G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=778bpback to top Synonyms
Publications
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