NO08G01320, NO08G01320 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G01320 vs. NCBI_GenBank
Match: EWM26759.1 (Endoplasmic reticulum, stress-associated Ramp4 [Nannochloropsis gaditana]) HSP 1 Score: 107.1 bits (266), Expect = 2.200e-20 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 Query: 1 MATSRATRLRSEKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTA 63 MATSRA RLRSEKFDKNVTKRGNVPVGKAAKREEA PVSP+LLGFF+FVVVGSA F II+TA Sbjct: 66 MATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTA 127
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_004504408.1 (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cicer arietinum]) HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8 Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64 M TSR +R EKF+KN+TKRG+VP K+ + PV P+LLGFF+FVV+GS++F II+TA+ Sbjct: 1 MTTSRRLAVRKVEKFEKNITKRGSVP-ETTVKKGKDYPVGPVLLGFFVFVVIGSSLFQIIRTAT 63
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_009396884.1 (PREDICTED: probable stress-associated endoplasmic reticulum protein [Musa acuminata subsp. malaccensis]) HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8 Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTA 63 M TSR R KF KNVTKRG+VP K AK+ + PV P+LLGFFIFVVVGS++F II+TA Sbjct: 1 MTTSRRLADRKIAKFQKNVTKRGSVP-EKTAKKGDNYPVGPILLGFFIFVVVGSSLFQIIRTA 62
BLAST of NO08G01320 vs. NCBI_GenBank
Match: GAQ88028.1 (Ribosome associated membrane protein RAMP4 [Klebsormidium nitens]) HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8 Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0 Query: 3 TSRATRLRSEKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTA 63 ++R T+++S+KF KN+ KRG VP K +K+E PV P++LGFF+FVVVGSAI II+ A Sbjct: 4 STRHTKVKSDKFQKNILKRGEVP--KTSKKEAKYPVGPIVLGFFLFVVVGSAILQIIRQA 61
BLAST of NO08G01320 vs. NCBI_GenBank
Match: OIW18026.1 (hypothetical protein TanjilG_07610 [Lupinus angustifolius]) HSP 1 Score: 65.9 bits (159), Expect = 5.600e-8 Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64 M TSR R KFDKN+TKRG+VP AK+ + PV P+LLGFF+FVVVGS+IF II+TA+ Sbjct: 1 MTTSRRLADRKIVKFDKNITKRGSVP-ETTAKKGKDYPVGPILLGFFVFVVVGSSIFQIIRTAT 63
BLAST of NO08G01320 vs. NCBI_GenBank
Match: NP_001150243.1 (uncharacterized protein LOC100283873 [Zea mays] >ACG38351.1 membrane protein [Zea mays] >ACN29199.1 unknown [Zea mays] >ONM24737.1 Ribosome associated membrane protein RAMP4 [Zea mays]) HSP 1 Score: 65.5 bits (158), Expect = 7.300e-8 Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64 M TSR R +F+KN+TKRG+VP + AK+ PV P+LLGFF+FVVVGS++F II+TAS Sbjct: 1 MTTSRRLADRKISRFEKNITKRGSVP--ETAKKANDYPVGPILLGFFVFVVVGSSLFQIIKTAS 62
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_009372267.1 (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Pyrus x bretschneideri]) HSP 1 Score: 65.5 bits (158), Expect = 7.300e-8 Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64 M TSR R EKF+KN+TKRG VP AK+ + PV P+LLGFFIFVV+GS++F II+TA+ Sbjct: 1 MTTSRRLADRKVEKFEKNITKRGAVP-ETTAKKAKDYPVGPILLGFFIFVVIGSSLFQIIRTAT 63
BLAST of NO08G01320 vs. NCBI_GenBank
Match: XP_007043980.1 (PREDICTED: stress-associated endoplasmic reticulum protein 2 [Theobroma cacao] >EOX99811.1 Ribosome associated membrane protein RAMP4 [Theobroma cacao] >PON54981.1 Stress-associated endoplasmic reticulum protein [Trema orientalis]) HSP 1 Score: 65.1 bits (157), Expect = 9.600e-8 Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64 M TSR R EKF+KN+TKRG VP K+ + PV PLLLGFFIFVV+GS++F II+TA+ Sbjct: 1 MTTSRRLADRKVEKFEKNITKRGTVP-ETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIRTAT 63
BLAST of NO08G01320 vs. NCBI_GenBank
Match: PIA51102.1 (hypothetical protein AQUCO_01100138v1 [Aquilegia coerulea]) HSP 1 Score: 65.1 bits (157), Expect = 9.600e-8 Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64 M TSR R EKFDKN+TKRG+VP K+ PV PL+LGFF+FVV+GS++F II+TA+ Sbjct: 1 MTTSRRLADRKIEKFDKNITKRGSVP-ETTTKKGNDYPVGPLVLGFFVFVVIGSSLFQIIRTAT 63
BLAST of NO08G01320 vs. NCBI_GenBank
Match: PON50686.1 (Stress-associated endoplasmic reticulum protein [Parasponia andersonii]) HSP 1 Score: 65.1 bits (157), Expect = 9.600e-8 Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0 Query: 1 MATSRATRLRS-EKFDKNVTKRGNVPVGKAAKREEAAPVSPLLLGFFIFVVVGSAIFSIIQTAS 64 M TSR R EKF+KN+TKRG V + AK+ + PV PLLLGFFIFVV+GS++F II+TA+ Sbjct: 1 MTTSRRLADRKVEKFEKNITKRGTV-LETTAKKSKDYPVGPLLLGFFIFVVIGSSLFQIIRTAA 63 The following BLAST results are available for this feature:
BLAST of NO08G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G01320 ID=NO08G01320|Name=NO08G01320|organism=Nannochloropsis oceanica|type=gene|length=650bpback to top protein sequence of NO08G01320.1 >NO08G01320.1-protein ID=NO08G01320.1-protein|Name=NO08G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=67bpback to top Synonyms
Publications
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