NO08G01180, NO08G01180 (gene) Nannochloropsis oceanica

Overview
NameNO08G01180
Unique NameNO08G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2097
Alignment locationchr8:367585..369681 -

Link to JBrowse

Properties
Property NameValue
DescriptionRna polymerase ii ctd phosphatase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:367585..369681 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036412HAD-like_sf
IPR036420BRCT_dom_sf
IPR001357BRCT_dom
IPR004274NIF
Vocabulary: Biological Process
TermDefinition
GO:0070940dephosphorylation of RNA polymerase II C-terminal domain
Vocabulary: Molecular Function
TermDefinition
GO:0008420RNA polymerase II CTD heptapeptide repeat phosphatase activity
Homology
BLAST of NO08G01180 vs. NCBI_GenBank
Match: EWM26621.1 (rna polymerase ii ctd phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 696.4 bits (1796), Expect = 8.800e-197
Identity = 393/642 (61.21%), Postives = 448/642 (69.78%), Query Frame = 0
Query:    1 MAKRRPRPASFLRDGSGGSGT---SNGSSRAYAVKALELDLETESLRPLAVSWVRRQGDRVKKDAELAQIICERLKGGGKVVRRLLATRTGTLTEIFMPDLSGTRQSATGXXXXXXXXXXXXXXXXXXXXXXRLVLGKMSYCTHPVLQSGRMCAVCGEVLEEEAGHTKEATRVFVQGGHHVSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHLHCGGLEVHAFDIFNQDRLLRHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLDSGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDPKEDRQLEHIWRVLQAVHALYY-----------------SDVKATTSSPNSTE---QAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLLPGCAKAAPQ 620
            MAKRRPRP +   +G+ G GT    NG +RAY  + LELDLE + LRPL VSW RRQGDRVK  AELAQ+ICERL GGGKVVRRL A  TG L E+  PDLSG R+  T                       RLVLGK+ YCTHPVLQSGRMCAVCGEVL E  G  +EATRVFVQGG+HVSVS+ EAA ++R+MA+ L   RKLNLILDIDLTLLHATIDPRAE L    LEVHAFDIFNQ R+LRHWCCLRP LR+FL QAH+LYVLTIYTHGRRDYAHQVARLLDPDR+LF+DRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPV+PFKFYTEFEE+NRVAGLAPAP+L S   P                              XXXXXXXXXXXXXXXXX                           +GDP+ED QLEH WRVL+AVHALYY                 S ++    +  + E   +A ++G  +EA E+Q     PP+NVA CL+++RR +LAGVTILFSGV+PRN DP RSDLGYMALSLGA+IV + +  VTH+VAEN +TEKV+RA R+G + +V R WLQLSFFHC+RKDE G++LPGC     Q
Sbjct:    1 MAKRRPRPTATSLNGTQGVGTCDNGNGGTRAYDTETLELDLEGQGLRPLTVSWGRRQGDRVKVGAELAQVICERLDGGGKVVRRLKAQHTGRLEEVVAPDLSGLRRPGT---DVGREGPEAKEPEERPLPPPRLVLGKLRYCTHPVLQSGRMCAVCGEVLSEGTGQAQEATRVFVQGGYHVSVSRTEAAFLHRSMAQKLRLARKLNLILDIDLTLLHATIDPRAERLDHQKLEVHAFDIFNQGRILRHWCCLRPHLRTFLSQAHALYVLTIYTHGRRDYAHQVARLLDPDRTLFEDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVLPFKFYTEFEEVNRVAGLAPAPVLGSSAIP--------------------------PSRPXXXXXXXXXXXXXXXXXPSGVSGKETDAEAGRKGEKTPPVPPTVFGDPREDTQLEHTWRVLEAVHALYYPRGGKPDTEQGDGGAGGSIIEERGPASGNDELSLKAGKEGEGEEADEDQ--GVRPPQNVAGCLSSVRRQVLAGVTILFSGVLPRNVDPRRSDLGYMALSLGARIVEDFSPTVTHLVAENASTEKVFRARRQGGMWIVARTWLQLSFFHCDRKDEAGHVLPGCMSTVVQ 611          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: XP_005856383.1 (rna polymerase ii ctd phosphatase, partial [Nannochloropsis gaditana CCMP526] >EKU19970.1 rna polymerase ii ctd phosphatase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 531.9 bits (1369), Expect = 2.900e-147
Identity = 272/375 (72.53%), Postives = 298/375 (79.47%), Query Frame = 0
Query:    1 MAKRRPRPASFLRDGSGGSGT---SNGSSRAYAVKALELDLETESLRPLAVSWVRRQGDRVKKDAELAQIICERLKGGGKVVRRLLATRTGTLTEIFMPDLSGTRQSATGXXXXXXXXXXXXXXXXXXXXXXRLVLGKMSYCTHPVLQSGRMCAVCGEVLEEEAGHTKEATRVFVQGGHHVSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHLHCGGLEVHAFDIFNQDRLLRHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLDSGPAP 373
            MAKRRPRP +   +G+ G GT    NG +RAY  + LELDLE + LRPL VSW RRQGDRVK  AELAQ+ICERL GGGKVVRRL A  TG L E+  PDLSG R+  T                       RLVLGK+ YCTHPVLQSGRMCAVCGEVL E  G  +EATRVFVQGG+HVSVS+ EAA ++R+MA+ L + RKLNLILDIDLTLLHATIDPRAE L    LEVHAFDIFNQ R+LRHWCCLRP LR+FL QAH+LYVLTIYTHGRRDYAHQVARLLDPDR+LF+DRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPV+PFKFYTEFEE+NRVAGLAPAP+L S   P
Sbjct:    6 MAKRRPRPTATSLNGTQGVGTCDNGNGGTRAYDTETLELDLEGQGLRPLTVSWGRRQGDRVKVGAELAQVICERLDGGGKVVRRLKAQHTGRLEEVVAPDLSGLRRPGT---DTGREGPEAKEPEERPLPPPRLVLGKLRYCTHPVLQSGRMCAVCGEVLSEGTGQAQEATRVFVQGGYHVSVSRTEAAFLHRSMAQKLRRARKLNLILDIDLTLLHATIDPRAERLDHQKLEVHAFDIFNQGRILRHWCCLRPHLRTFLSQAHALYVLTIYTHGRRDYAHQVARLLDPDRTLFEDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVLPFKFYTEFEEVNRVAGLAPAPVLGSSAIP 377          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: XP_013018587.1 (CTD phosphatase Fcp1 [Schizosaccharomyces octosporus yFS286] >EPX72953.1 CTD phosphatase Fcp1 [Schizosaccharomyces octosporus yFS286])

HSP 1 Score: 178.7 bits (452), Expect = 6.200e-41
Identity = 141/501 (28.14%), Postives = 211/501 (42.12%), Query Frame = 0
Query:  139 CTHPVLQSGRMCAVCGE-VLEEEAGHTKEATRVFVQGGHH---VSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRA-----------EHLHCGGLEVHAFDIFNQDRLL--RHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLD---SGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDPKE---------DRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLL 611
            CTH V   G +CA+CGE +  ++     +  R  +   H    ++VS  EA  I       L   R+L+LI+D+D T++HAT+DP              HL     +V +F +    R    R++  LRP L+ FL +  ++Y L IYT G + YA ++A+L+DP+  +F+DR++SRDD   L  QKSLQRLFP    M +I+DD   +W  + + +L+ VVPF+F+    ++N      P PL +   + P                                                                          N   D  E         D++L H+ R+L  +H  YY +     +  N                          NV + + +++  +L G  ILFSGV+P   D F SD+   A+S GA+IV +  +  TH++A    TEKV  A   G V VV   WL  S    ER  E+ YLL
Sbjct:   99 CTHEV-HYGGLCAICGENITSQDYMGYSDMARANISMTHDTGGLTVSLDEANRIEEQNVIRLRNERRLSLIVDLDQTIIHATVDPTVGEWMSDPSNANYHLL---KDVRSFYLQEGFRTYSSRYYIKLRPGLQEFLARISNMYELHIYTMGTKAYAKEIAKLIDPEGKIFQDRVLSRDDSGSL-TQKSLQRLFPCDTSMVVIIDDRGDIW--DWNPNLIKVVPFEFFVGIGDINSNFLAKPTPLPEQESTSPIETPHEQEESVDVNTNQDAVLPDSSSSQSTSTIPERTLLKETFLQDKQALEEQNKERFTALQLQKSERPLAKQQNALRDEDEHQHSLLHEGDKELLHLERILTRIHQAYYDEESRNENQKNKVH----------------------ANVERIIPSMKSKVLKGCRILFSGVIPLGIDVFSSDIAKWAMSFGAQIVLDFDQSPTHLIAAKIRTEKVKTAINMGSVRVVKLNWLTDSISAWERLSESNYLL 570          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: XP_013022342.1 (CTD phosphatase Fcp1 [Schizosaccharomyces cryophilus OY26] >EPY52460.1 CTD phosphatase Fcp1 [Schizosaccharomyces cryophilus OY26])

HSP 1 Score: 176.0 bits (445), Expect = 4.000e-40
Identity = 141/499 (28.26%), Postives = 211/499 (42.28%), Query Frame = 0
Query:  139 CTHPVLQSGRMCAVCGE-VLEEEAGHTKEATRVFVQGGHH---VSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHLHCGGLEVH------AFDIFNQDRLLRHWCC----LRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLD-SGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDPKE------------DRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLL 611
            CTH V   G +CA+CGE +  ++     + TR  +   H    ++VS  EA+ I       L K R+L+LI+D+D T++HAT+DP           V+          + Q+    +  C    LRP L+ FL +  S+Y L IYT G + YA ++A+++DP+  +F+DR++SRDD   L  QKSLQRLFP    M +I+DD   +W  + + +L+ VVPF+F+    ++N      P PL +    +P                                                                       +       E            D++L H+ RVL  +H  YY                +E    KEA +          NV + + +++  +L G  ILFSGV+P   D   SD+   A S GA+IV +  +  TH++A    TEKV  A   G+V VV   WL  S    ER  E+ YLL
Sbjct:   99 CTHEV-HYGGLCAICGENITSQDYMGYSDMTRANISMTHDTGGLTVSLDEASRIEEQNVSRLRKERRLSLIVDLDQTIIHATVDPTVGEWMSDPSNVNYHLLKDVRSFYLQEGYRTYSSCYYIKLRPGLQEFLTRISSMYELHIYTMGTKAYAKEIAKIIDPEGKVFQDRVLSRDDSGSL-TQKSLQRLFPCDTSMVVIIDDRGDIW--DWNPNLIKVVPFEFFVGIGDINSNFLAKPTPLPEQENTSPVETPHEQTESVDVNTNQDAVLPESSASLPGSSTIPERTLLKETFLQDKQALDEQNKERFTALQLQKSERPLAKQQNALLEEDEPDHSVLHGGDKELLHLERVLTRIHQAYYD---------------EESNNEKEANKVH-------ANVERIIPSMKSKVLKGCRILFSGVIPLGIDVVTSDIARWATSFGAQIVVDFDQSPTHLIAAKIRTEKVKTAITLGNVRVVKLNWLTESLSMWERLPESNYLL 571          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: OZJ04456.1 (hypothetical protein BZG36_02785 [Bifiguratus adelaidae])

HSP 1 Score: 173.7 bits (439), Expect = 2.000e-39
Identity = 207/496 (41.73%), Postives = 274/496 (55.24%), Query Frame = 0
Query:  139 CTHPVLQSGRMCAVCGE---VLEEEAGHTKEATRVFVQGGHHVSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHL--------HCGGLEVHAFDI-FNQDRLLRHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELN-----RVAGLAPAPLLDSGPAP--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDP---KEDRQLEHIWRVLQAVHALYYS--DVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLL 611
            C+H V   G +CA+CG+   V   E  H   AT      G  + VS+ EA  I +  AE L K ++L+LI+D+D T++ AT D   E          H    +V  F +  N D  + ++   RP+L +FL + + LY L IYT G R YA  VAR +DP+   F+ RIVSRDD   +  QKS+QRLFP    M +I+DD   +W    S +L+ V P+ F+    ++N     +    +  P  DS P+            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +  +  P    +DR+LE +  VL++VH  +Y   D + T+SS N  E+ +                AP  +V   +  ++R IL G  ILFS V+P   +   +D+  +A   GA+   +LT  VTHVVA    T+KV  A R   V++V   WL  S    ER+DE  YLL
Sbjct:  106 CSHAVQLKG-VCALCGKDLTVANYEGSHVNRATINMSYDGSGLMVSRTEAERIEKENAERLIKEKRLSLIVDLDQTIIQATWDTSVEQWMSDPNNPNHAATKDVRKFSLPANPD--IMYYIKPRPTLATFLAEINKLYELHIYTMGTRSYAEAVAREIDPEGRYFEKRIVSRDDSGSI-TQKSIQRLFPCDQSMVVIIDDRSDIW--NWSPNLIEVQPYDFFLGSGDINSAFLPKKDSTSKRPREDSDPSKPMANGNNDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGTHSGPILKDDDRELERLLAVLKSVHKKFYDAYDAQQTSSSENLPEEFR----------------AP--DVKVLIPQLKRKILEGTNILFSSVIPLGQEQRSADIWRLARQFGAECSLKLTRQVTHVVAGKNGTQKVNGARRMKGVVIVRPEWLYDSISKWERQDEKNYLL 577          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: ORY93174.1 (HAD-like domain-containing protein [Syncephalastrum racemosum])

HSP 1 Score: 172.2 bits (435), Expect = 5.800e-39
Identity = 196/490 (40.00%), Postives = 274/490 (55.92%), Query Frame = 0
Query:  139 CTHPVLQSGRMCAVCGEVLEEEAGHTKEATRVFVQGGHHVSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHL--------HCGGLEVHAFDIFNQDRLLRHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLDSGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDP---KEDRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLLPGCAKAA 618
            C H V+ +G +CA+CG  +E   G T        +G   ++VS+ EA  + +  AE L  +RKL+LILD+D T++HAT DP             H    ++  F +     +  ++  LRP L  FL     LY L IYT G R YA  VAR +D    LF++RI+SRD+   +  QK +QRLFP    M ++LDD   VW    S +L+ + P++F+    ++N       +P     P        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXX       P    +DR+L  +  +L+ +H  +Y+D                +G  + ++ +   S  P  +V   +  +++ +L GV I+F+G++P++     S +  +A S GA  +P+LT  VTHVVA    T+KV+RA R  +V +V+  WL  S    +++DE  Y LP  A+AA
Sbjct:    3 CNHEVVYNG-LCALCGSDVESSEGQTHINMSHDSRG---ITVSRQEAERLEKENAERLLSSRKLSLILDLDQTVVHATWDPTVGEWMNDENNANHPATKDIRKFTLPGSHFV--YYIKLRPGLSEFLETVSKLYELHIYTMGTRHYAEAVAREIDSTGKLFRNRILSRDESGSV-TQKKIQRLFPCDTSMVVVLDDRSDVW--SFSPNLIRIKPYEFFVGTGDIN-------SPFAPRQPPDQDTLAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALXXXXXXXXXXXXXXXXXXXXXXXXXXQDRPLLVDDDRELYTMIEILKEIHQRFYND----------------EGRYERSKTDGAGSLQPKPDVTALMPAMKKKVLEGVHIVFTGLIPQHQTLSSSAIWQLAESFGATCLPDLTGNVTHVVAARAGTDKVHRAQRIPNVHIVSEAWLSDSTARWKKQDEAQYALPELAQAA 460          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: CDS11612.1 (hypothetical protein LRAMOSA03875 [Lichtheimia ramosa])

HSP 1 Score: 171.8 bits (434), Expect = 7.600e-39
Identity = 210/492 (42.68%), Postives = 278/492 (56.50%), Query Frame = 0
Query:  136 MSYCTHPVLQSGRMCAVCGEVLEEEAGHTKEATRVFVQGGHH---VSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHL--------HCGGLEVHAFDIFNQDRLLRHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLDSGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDPK-----EDRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLLP 612
            M  CTH V   G MCAVCG+ L++      E+++  +   H+   ++VS+ EA  + +  A  L + RKL+LILD+D T++HAT DP             H    ++  F +      L ++  LRP L  FL Q   LY L IYT G R YA  VAR +DP+  LF+DRI+SRD+   +  QK +QRLFP    M ++LDD   VW    S +L+ V P++F+    ++N        P +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     G  +      D++L  + +VL  VH  +Y  + A     N         G   A  ++P       +V   +  +R+ +L GV  +FSG++P+      S    +A S GA  +P+LT  VTHV+A    T+KV RA +   + +VT  WL  S    ER+DE  Y+LP
Sbjct:    1 MEECTHEVQFHG-MCAVCGKNLDK-----AESSKDNINMSHNTTGLTVSRKEAERLEQENAARLMEERKLSLILDLDQTVVHATWDPTVGEWMKDENNANHPATKDIRKFTLPGSS--LMYYIKLRPGLSEFLEQVSKLYELHIYTMGTRHYAEAVAREIDPEDKLFRDRILSRDESGSM-TQKKIQRLFPCDTSMVVVLDDRSDVW--SFSPNLIKVKPYEFFVGIGDINSPFAPKQPPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQDQPLLVDNDKELYTMAKVLVEVHDRFYQGLDAYNKEQNG-------AGSSSAAVKKP-------DVKDLIPEMRKKVLDGVRAVFSGLIPQQQPLPTSMYWQLAESFGAVCLPDLTGNVTHVIAAKAGTDKVKRARKTNRIKIVTADWLMDSVGRWERQDENKYILP 467          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: CDH50608.1 (rna polymerase ii ctd phosphatase [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 170.6 bits (431), Expect = 1.700e-38
Identity = 209/491 (42.57%), Postives = 278/491 (56.62%), Query Frame = 0
Query:  136 MSYCTHPVLQSGRMCAVCGEVLEEEAGHTKEATRVFVQGGHH---VSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHL--------HCGGLEVHAFDIFNQDRLLRHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLDSGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDP----KEDRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLLP 612
            M  CTH V   G +CAVCG+VL++      E+T+  +   H+   ++VS+ EA  + +  A  L + RKL+LILD+D T++HAT DP             H    ++  F +   +  L ++  LRP L  FL Q   LY L IYT G R YA  VAR +DP+  LF+DRI+SRD+   +  QK +QRLFP    M ++LDD   VW    S +L+ V P++F+    ++N  +              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   P  D      +D++L  + +VL  VH  +Y  + A     N    +     +K              +V   +  +R+ +L GV  +FSG++P+      S    +A S GA  +P+LT  VTHV+A    T+KV RA +   + +VT  WL  S    ER+DE  Y+LP
Sbjct:   40 MEDCTHEVQFQG-LCAVCGKVLDK-----AESTKDNINMSHNTTGLTVSRKEAERLEQENASRLMEDRKLSLILDLDQTVVHATWDPTVGEWMKDENNANHPATKDIRKFTLPGSN--LMYYIKLRPGLSEFLEQVSKLYELHIYTMGTRHYAEAVAREIDPEDKLFRDRILSRDESGSM-TQKKIQRLFPCDTSMVVVLDDRSDVW--SFSPNLIKVKPYEFFVGIGDIN--SPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGQDQPLLVDDDKELYTMAKVLVEVHDRFYKGLDAYNKEQNDAGSSSSPAVKK-------------PDVKDLIPEMRKQVLDGVHAVFSGLIPQQQPLPTSMYWQLAESFGAVCLPDLTGNVTHVIAAKAGTDKVKRARKTNRIKIVTADWLMDSVGRWERQDEQKYILP 504          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: KKK23867.1 (hypothetical protein AOCH_005412 [Aspergillus ochraceoroseus] >PTU21412.1 hypothetical protein P175DRAFT_0508390 [Aspergillus ochraceoroseus IBT 24754])

HSP 1 Score: 166.0 bits (419), Expect = 4.200e-37
Identity = 139/516 (26.94%), Postives = 214/516 (41.47%), Query Frame = 0
Query:  139 CTHPVLQSGRMCAVCGEVLEEEAGHTK--EATRVFVQGGHH---VSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDP--------RAEHLHCGGLEVHAFDIFNQDRLLR---HWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELN------RVAGLAPAPLLDSGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDPKE---------------------DRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLLP 612
            C H V Q G +CA CG+ + E   +T+  ++ R  +Q  H    ++VS+ EA  +  +    L   RKL+L++D+D T++HAT+DP        +    H    +V AF + +    +R   ++  LRP L SFL     L+ L IYT G R YA  +A ++DPDR LF DRI+SRD+   L   K+L RLFP   +M +I+DD   VW+   S +L+ V P+ F+    ++N      +    AP+   D GP                                                                          +   +  +                     D++L  +   L+ VH  ++ +     S       A   G +  ++E+       P +V   +  I+R IL GV ++FSGV+P  TD   +D+   A S G  I  ++    TH+VA    T KV  A+R  ++ +VT  WL     H  R DE  YLLP
Sbjct:   93 CAHEV-QYGGLCAECGKDMTESTYNTEMTDSMRAPIQMVHDNTALTVSEKEATRVEEDAKRRLLANRKLSLVVDLDQTIIHATVDPTVGEWMEDKDNPNHEALSDVRAFQLVDDGPGMRGCWYYVKLRPGLESFLRNVSELFELHIYTMGTRAYAQHIASIIDPDRKLFGDRILSRDESGSLTA-KNLHRLFPVDTKMVVIIDDRGDVWR--WSPNLIKVSPYDFFVGIGDINSSFLPKKQELGAPSKAGDKGPTSAPKGSTLTEHHVNGTTEKADVGEVSTLEQLVTMGGGDNPRLLQEQSDAQEETIMHQVEDRPLLQKQKELDAEDELAETSDSSTMDESQDSTRHRHHLLEDNDQELFQLEDRLEQVHRQFFEEYDKKRSRALGGRVAVLRGEKTPSKEKDVDLKLVP-DVKDIMPNIKRQILGGVVMVFSGVLPLGTDTQNADISLWAKSFGVVIASKIDMKTTHLVAGRNRTAKVREATRYRNIKIVTTQWLLDCLMHWRRLDEEPYLLP 603          
BLAST of NO08G01180 vs. NCBI_GenBank
Match: KKK26279.1 (hypothetical protein ARAM_003050 [Aspergillus rambellii])

HSP 1 Score: 166.0 bits (419), Expect = 4.200e-37
Identity = 139/516 (26.94%), Postives = 214/516 (41.47%), Query Frame = 0
Query:  139 CTHPVLQSGRMCAVCGEVLEEEAGHTK--EATRVFVQGGHH---VSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDP--------RAEHLHCGGLEVHAFDIFNQDRLLR---HWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELN------RVAGLAPAPLLDSGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNPYGDPKE---------------------DRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLLP 612
            C H V Q G +CA CG+ + E   +T+  ++ R  +Q  H    ++VS+ EA  +  +    L   RKL+L++D+D T++HAT+DP        +    H    +V AF + +    +R   ++  LRP L SFL     L+ L IYT G R YA  +A ++DPDR LF DRI+SRD+   L   K+L RLFP   +M +I+DD   VW+   S +L+ V P+ F+    ++N      +    AP+   D GP                                                                          +   +  +                     D++L  +   L+ VH  ++ +     S       A   G +  ++E+       P +V   +  I+R IL GV ++FSGV+P  TD   +D+   A S G  I  ++    TH+VA    T KV  A+R  ++ +VT  WL     H  R DE  YLLP
Sbjct:   93 CAHEV-QYGGLCAECGKDMTESTYNTEMTDSMRAPIQMVHDNTALTVSEKEATRVEEDAKRRLLANRKLSLVVDLDQTIIHATVDPTVGEWMEDKDNPNHEALSDVRAFQLVDDGPGMRGCWYYVKLRPGLESFLRNVSELFELHIYTMGTRAYAQHIASIIDPDRKLFGDRILSRDESGSLTA-KNLHRLFPVDTKMVVIIDDRGDVWR--WSPNLIKVSPYDFFVGIGDINSSFLPKKQELGAPSKAGDKGPTSAPKGSTLTEHHVNGTTEKADVGEVSTLEQLVTMGGGDNPRLLQEQSDAQEETIMHQVEDRPLLQKQKELDAEDELAETSDSSTIDESQDSTRHRHHLLEDNDQELFQLEDRLEQVHRQFFEEYDKKRSRALGGRVAVLRGEKTPSKEKDVDLKLVP-DVKDIMPNIKRQILGGVVMVFSGVLPLGTDTQNADISLWAKSFGVVIASKIDMKTTHLVAGRNRTAKVREATRYRNIKIVTTQWLLDCLMHWRRLDEEPYLLP 603          
The following BLAST results are available for this feature:
BLAST of NO08G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26621.18.800e-19761.21rna polymerase ii ctd phosphatase [Nannochloropsis... [more]
XP_005856383.12.900e-14772.53rna polymerase ii ctd phosphatase, partial [Nannoc... [more]
XP_013018587.16.200e-4128.14CTD phosphatase Fcp1 [Schizosaccharomyces octospor... [more]
XP_013022342.14.000e-4028.26CTD phosphatase Fcp1 [Schizosaccharomyces cryophil... [more]
OZJ04456.12.000e-3941.73hypothetical protein BZG36_02785 [Bifiguratus adel... [more]
ORY93174.15.800e-3940.00HAD-like domain-containing protein [Syncephalastru... [more]
CDS11612.17.600e-3942.68hypothetical protein LRAMOSA03875 [Lichtheimia ram... [more]
CDH50608.11.700e-3842.57rna polymerase ii ctd phosphatase [Lichtheimia cor... [more]
KKK23867.14.200e-3726.94hypothetical protein AOCH_005412 [Aspergillus ochr... [more]
KKK26279.14.200e-3726.94hypothetical protein ARAM_003050 [Aspergillus ramb... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008936NSK008936Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01180.1NO08G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g25gene3933Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01180.1NO08G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01180 ID=NO08G01180|Name=NO08G01180|organism=Nannochloropsis oceanica|type=gene|length=2097bp
ATGGCAAAACGCAGGCCTCGTCCCGCATCTTTCCTGAGGGACGGCAGTGG
TGGCAGCGGCACCAGCAACGGGAGCAGCCGGGCGTACGCCGTCAAGGCGT
TGGAGCTGGACTTAGAGACAGAGAGTTTGCGGCCCTTGGCCGTGTCATGG
GTACGTCGGCAAGGGGACCGGGTGAAGAAGGATGCGGAACTCGCGCAGAT
CATTTGCGAGCGTCTGAAGGGCGGTGGGAAGGTTGTACGGAGGCTGTTGG
CAACTCGGACTGGCACCTTGACAGAAATCTTCATGCCGGACTTGAGCGGC
ACACGTCAGTCGGCCACAGGCGTGGGGAAGGGCAACGAAGGGGACATCGA
GGACGAGGACGAGCAGGAGATGCCATTGCCTCCACCTCGCTTGGTCTTGG
GAAAGATGAGCTACTGCACGCATCCAGTTTTACAAAGTGGACGCATGTGC
GCCGTGTGTGGGGAAGTGCTAGAAGAGGAAGCAGGCCACACAAAAGAAGC
CACGCGGGTCTTTGTTCAAGGCGGTCATCACGTCTCCGTCTCCAAACATG
AAGCTGCCAACATCTACCGAAACATGGCGGAAACCCTCACAAAAACTCGG
AAGCTTAACCTGATTCTTGACATTGACCTGACCCTGCTTCACGCCACCAT
CGATCCGCGCGCCGAGCACCTGCACTGCGGTGGGCTCGAGGTCCACGCCT
TCGACATTTTCAACCAAGACCGCCTCCTCCGTCACTGGTGCTGCCTCCGC
CCGTCCCTCCGCTCCTTCCTCCTCCAAGCCCACTCCCTCTACGTCCTCAC
TATATACACCCACGGCCGTCGAGACTACGCACATCAGGTTGCACGTCTCC
TCGACCCTGACCGGTCTCTCTTTAAGGATCGAATCGTCTCCCGCGACGAC
TGCCCAGACCTCCACGGTCAAAAATCCCTCCAACGGCTTTTCCCCGGAGG
GATTGAAATGGCATTGATTCTTGACGACTCCCCCCAGGTGTGGCAAGGGG
AGCAATCGAGGCACCTACTACCAGTCGTCCCTTTCAAGTTTTATACTGAA
TTTGAAGAGCTTAACCGAGTGGCAGGTCTCGCACCTGCTCCACTCTTGGA
TTCTGGCCCGGCACCTCCAACACCGGTGACAACAGCGGCAGCAGGAGCAG
CAGCTGTTGCGATGACGGTAGTGACGCCCACCCAGGAAAGCAGCGGTGGC
TGCAGCAACGGTAAAGAAGACAACAGTGCTGACGACGTGGCCACACCACC
CACCCAGCCACCAGCTCCATCATTGACATTGACAGCACCAGCATCAGCAG
CACCCACCCCTTCCTTTTCCTCCTCGACCTCGAATCCCTATGGCGATCCT
AAGGAAGACAGACAACTTGAACACATCTGGCGGGTCCTGCAAGCCGTGCA
TGCCCTGTACTACAGTGACGTAAAAGCCACCACCAGTTCTCCCAACAGTA
CAGAACAGGCACAGGAAGATGGAGGGAGGAAGGAAGCGCAAGAGGAGCAG
CCAACCTCCACAGCTCCCCCAAAAAATGTCGCTCAATGTCTCAACACCAT
CCGTCGTAGCATCTTAGCAGGTGTCACCATCCTCTTCAGTGGTGTCGTGC
CTCGTAATACGGATCCATTTCGAAGTGATTTAGGATACATGGCCCTGTCA
TTAGGCGCAAAAATTGTCCCAGAGCTAACAGAGGTAGTCACGCATGTAGT
CGCCGAGAACCCCAACACGGAAAAAGTGTATCGGGCGAGTCGAAGAGGCG
ATGTTTTGGTAGTGACGAGGGTTTGGTTGCAATTGTCGTTTTTTCATTGT
GAGCGCAAGGACGAGACTGGGTATTTGTTGCCCGGGTGCGCCAAGGCGGC
CCCGCAAGGGACAGTGACTGGAGAGCCAGGAGACGTGTTGCAGCACTCGG
AGTCGACAAGTTTCATGCAGGAAGAAGACGAGGAAGAGAGAGACAGTGAG
GATCAGGTAGAAGAAAATAAAAAGCAACGGGCCAGTAAACGGCGAAGGGA
TGAGGAGATAGAGGAGGACGAGGAGGGTGGGGAGGGGGTAGGGGAAGAGG
GGGTGGGTGCTCTATTGGCGGCGGCTTTGGAGGATGAATTGGGCTGA
back to top

protein sequence of NO08G01180.1

>NO08G01180.1-protein ID=NO08G01180.1-protein|Name=NO08G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MAKRRPRPASFLRDGSGGSGTSNGSSRAYAVKALELDLETESLRPLAVSW
VRRQGDRVKKDAELAQIICERLKGGGKVVRRLLATRTGTLTEIFMPDLSG
TRQSATGVGKGNEGDIEDEDEQEMPLPPPRLVLGKMSYCTHPVLQSGRMC
AVCGEVLEEEAGHTKEATRVFVQGGHHVSVSKHEAANIYRNMAETLTKTR
KLNLILDIDLTLLHATIDPRAEHLHCGGLEVHAFDIFNQDRLLRHWCCLR
PSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDD
CPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTE
FEELNRVAGLAPAPLLDSGPAPPTPVTTAAAGAAAVAMTVVTPTQESSGG
CSNGKEDNSADDVATPPTQPPAPSLTLTAPASAAPTPSFSSSTSNPYGDP
KEDRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQ
PTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALS
LGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHC
ERKDETGYLLPGCAKAAPQGTVTGEPGDVLQHSESTSFMQEEDEEERDSE
DQVEENKKQRASKRRRDEEIEEDEEGGEGVGEEGVGALLAAALEDELG*
back to top
Synonyms
Publications