NO08G01160, NO08G01160 (gene) Nannochloropsis oceanica

Overview
NameNO08G01160
Unique NameNO08G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr8:363801..364397 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:363801..364397 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G01160 vs. NCBI_GenBank
Match: EWM26752.1 (hypothetical protein Naga_100001g23 [Nannochloropsis gaditana])

HSP 1 Score: 276.9 bits (707), Expect = 4.800e-71
Identity = 133/163 (81.60%), Postives = 147/163 (90.18%), Query Frame = 0 
Query:    1 MKQLQTLVRQGRKILANMYLREILTTRDTCFFFQPSSMNSDTTLDMKQKFRTQTGLTWRYISPGVSQHFLKDSPYKALERLMQGPILVAYPEEIEDRTISTRAVLGLAKEFNLGVLGVKWRNNFLSAAELKELKSQGMYRGEMLSLFANYQRNIVQALKMHHE 164
            MKQLQTLVRQGRK+LANMYLREILTTRDTCFFFQP SMNS+T L MKQKFR QTGLTWR  SP VSQH+LKDSPYKAL RL+QGP++VAYPEEI DR I TRAVLGLAKEFNLG+LG KW+NNFLSAA+LKELK++G+YRGE+L LFA YQR +VQAL MHHE
Sbjct:    1 MKQLQTLVRQGRKVLANMYLREILTTRDTCFFFQPPSMNSETVLQMKQKFRAQTGLTWRSFSPAVSQHYLKDSPYKALIRLLQGPMIVAYPEEIADRAIPTRAVLGLAKEFNLGILGAKWQNNFLSAADLKELKAEGVYRGEVLGLFATYQREVVQALNMHHE 163
The following BLAST results are available for this feature:
BLAST of NO08G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26752.14.800e-7181.60hypothetical protein Naga_100001g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008939NSK008939Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01160.1NO08G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669418gene_3446Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g23gene3935Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01160.1NO08G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01160 ID=NO08G01160|Name=NO08G01160|organism=Nannochloropsis oceanica|type=gene|length=597bp
ATGAAGCAACTGCAAACTCTCGTCCGACAAGGCCGCAAGATCCTGGCCAA
CATGTACCTGCGAGAAATCCTGACCACGCGCGACACCTGCTTCTTCTTCC
AACCCTCGTCCATGAACTCAGACACCACTCTCGACATGAAGCAAAAATTC
CGCACCCAAACCGGCCTGACCTGGCGGTACATCTCCCCTGGGGTCTCGCA
GCACTTCCTCAAGGACAGCCCGTACAAGGCATTGGAGCGATTGATGCAAG
GTCCTATACTGGTCGCCTACCCTGAAGAAATTGAGGACCGCACAATCTCC
ACGCGTGCCGTGCTCGGATTGGCAAAAGAGTTCAATCTCGGCGTGCTGGG
CGTTAAATGGCGCAACAACTTCTTGTCCGCCGCTGAGCTGAAGGAACTTA
AGAGTCAGGGTATGTATAGAGGTGAGATGTTGTCGTTGTTTGCCAACTAT
CAGAGGAATATCGTGCAGGCGCTCAAGATGCACCACGAGAAGGAGACGGG
GACGGGAGAGGGAGGGGAGGGGGAGGGGGAGGTCTTGAAGGTGGCAGCAG
CAGCAGCTGGAGGACGAGGAGAAAGCAAATCATCATCAAGCAAGTAA
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protein sequence of NO08G01160.1

>NO08G01160.1-protein ID=NO08G01160.1-protein|Name=NO08G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MKQLQTLVRQGRKILANMYLREILTTRDTCFFFQPSSMNSDTTLDMKQKF
RTQTGLTWRYISPGVSQHFLKDSPYKALERLMQGPILVAYPEEIEDRTIS
TRAVLGLAKEFNLGVLGVKWRNNFLSAAELKELKSQGMYRGEMLSLFANY
QRNIVQALKMHHEKETGTGEGGEGEGEVLKVAAAAAGGRGESKSSSSK*
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Synonyms
Publications