NO08G01000, NO08G01000 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G01000 vs. NCBI_GenBank
Match: EWM26714.1 (dynein light intermediate chain [Nannochloropsis gaditana]) HSP 1 Score: 291.6 bits (745), Expect = 6.200e-75 Identity = 199/499 (39.88%), Postives = 265/499 (53.11%), Query Frame = 0 Query: 14 KQQQEQHWAALLSEAAANSKGQPKFNSGTVLFLGD-AVGKTRLVKRFQKIPKRADKLAFMVGERMEAGRATTEEEKLECLEAGEEASSL------PLLSYSYFDAPGEARDEGSSSGSNIGRRGSVRTSERGMSPDTRLRRNNDIESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTG-RKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAE---AGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSS-LPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPPKGVR 501 +++ E W LL+EAA + Q F GT+LFLGD AVGKTRL+ RF ++ A G A EEEK + E G+E S LLSY++F A + + G G G P + + + D+++MD+ AR+N+WSLSDP+ K LL VA DD + A ++ T + A+ LQRT+CMI +DLTRPW CE+AL++WV VL++VL E AGC +G+ LVAYL++CY + + VFR+++ R +SS + S+ LP GVL ENLGVPL+VVGL+ADL PDS++D RS F QQYLR CLK+GA+LVY SA+ NCLLLQRY+LHRLYPE F F L QA R + FVP+GWD+ E+V+KLLSPQ++PWP S TF++I VPPKG R Sbjct: 11 QRETELIWGPLLAEAARSE--QSNFTPGTILFLGDAAVGKTRLIDRFITSYDALERQAAATGRNFIA-----EEEKED--EEGQEGSGALSSHDHSLLSYAFFPAIDPVGCKAGGQSWDNGTVGRSSDCLPGRCPAGASKGLAEDDQDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPG---VRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEE---------EGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGG----------------GLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALT-FVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGAR 471
BLAST of NO08G01000 vs. NCBI_GenBank
Match: CBJ30850.1 (D1LIC, cytoplasmic dynein 1 light intermediate chain [Ectocarpus siliculosus]) HSP 1 Score: 139.0 bits (349), Expect = 5.100e-29 Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = 0 Query: 366 LPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPPKG 499 L GVL NLGVP++VVG +AD + + ++FE +QR F+QQ LR FCLK+GAALVY SA NC LL RY+L +YP+ F FS Q ++ F+PAGWDS+ ++ LLSP PW +ATF +++VPP G Sbjct: 267 LGDGVLERNLGVPMVVVGCKADSLQS-ETFEQQQRLHFIQQSLRRFCLKYGAALVYTSAKDSVNCSLLHRYLLSCVYPDAFSFSEEGQT--SDAAFIPAGWDSKRLIDGLLSPDKTPWGPNATFAEVVVPPPG 396
BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_009524077.1 (dynein [Phytophthora sojae] >EGZ21360.1 dynein [Phytophthora sojae]) HSP 1 Score: 103.6 bits (257), Expect = 2.400e-18 Identity = 91/345 (26.38%), Postives = 141/345 (40.87%), Query Frame = 0 Query: 152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497 ESGG +D M A+I WSL+D + K L+++A + + LQ+TV I +DL+RPWT +++L+QW+ L+ L E ++AY E P V S+P T S+ + GVL++NLGVPL++V +ADL E+ + +++ LR F +++GA++V+ SA +N L++YILHR YP F F+ Q SLF+P+G+DS E+V + L WPT F +I+ P Sbjct: 68 ESGGDASEDVM---AQIGTWSLNDLNLKDLIKIA----------------------------------VKPRTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPEARNELYAAIKQHILAY-----------------------------------------------EDPT--VDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVLVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSLFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 308
BLAST of NO08G01000 vs. NCBI_GenBank
Match: POM59694.1 (Dynein 1 light intermediate chain [Phytophthora palmivora var. palmivora] >POM81387.1 Dynein 1 light intermediate chain [Phytophthora palmivora var. palmivora]) HSP 1 Score: 103.2 bits (256), Expect = 3.100e-18 Identity = 91/345 (26.38%), Postives = 141/345 (40.87%), Query Frame = 0 Query: 152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497 ESGG +D M A I WSL+D S K L+++A + + LQ+TV I +DL+RPWT +++L+QW+ L+ L E L+A T+ K + V S+P T S+ + GVL++NLGVPL++V +ADL E+ + +++ LR F +++GA++V+ SA +N L++YILHR YP F F+ Q S+F+P+G+DS E+V + L WPT F +I+ P Sbjct: 68 ESGGDASEDVM---AHIGTWSLNDLSLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLE-------------------------QINLLAPETR--------------------------------NELYAAIKQHILAYEDPSVDHSAPTPMDT-----STNEFMQEGVLSKNLGVPLMIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFAEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 308
BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_013419825.1 (cytoplasmic dynein 1 light intermediate chain 2 isoform X1 [Lingula anatina]) HSP 1 Score: 102.4 bits (254), Expect = 5.300e-18 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0 Query: 337 VKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFED--EQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEE 471 +K P + P S T R P L LT NLG+P++VV ++D + + D E+ F+QQ++R FCL +GAAL YVS D NC LL +Y++HR+Y FPFS+ R+S+FVPAGWD+E+ Sbjct: 184 IKSPPRRDFNPLHPSASSTDEERVLLP--LGESTLTNNLGIPIVVVVTKSDAISTLEKENDYREEHFDFIQQHIRKFCLNYGAALAYVSVKEDKNCELLYKYLVHRIYG--FPFSVPGYVVERDSVFVPAGWDNEK 315
BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_023933298.1 (cytoplasmic dynein 1 light intermediate chain 2 isoform X2 [Lingula anatina]) HSP 1 Score: 102.4 bits (254), Expect = 5.300e-18 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0 Query: 337 VKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFED--EQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEE 471 +K P + P S T R P L LT NLG+P++VV ++D + + D E+ F+QQ++R FCL +GAAL YVS D NC LL +Y++HR+Y FPFS+ R+S+FVPAGWD+E+ Sbjct: 184 IKSPPRRDFNPLHPSASSTDEERVLLP--LGESTLTNNLGIPIVVVVTKSDAISTLEKENDYREEHFDFIQQHIRKFCLNYGAALAYVSVKEDKNCELLYKYLVHRIYG--FPFSVPGYVVERDSVFVPAGWDNEK 315
BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_008891035.1 (hypothetical protein PPTG_01179 [Phytophthora parasitica INRA-310] >ETI55996.1 hypothetical protein F443_01371 [Phytophthora parasitica P1569] >ETK95808.1 hypothetical protein L915_01302 [Phytophthora parasitica] >ETL49191.1 hypothetical protein L916_01282 [Phytophthora parasitica] >ETM02247.1 hypothetical protein L917_01262 [Phytophthora parasitica] >ETM55492.1 hypothetical protein L914_01291 [Phytophthora parasitica] >ETN25043.1 hypothetical protein PPTG_01179 [Phytophthora parasitica INRA-310] >ETO84749.1 hypothetical protein F444_01372 [Phytophthora parasitica P1976] >ETP53824.1 hypothetical protein F442_01309 [Phytophthora parasitica P10297] >KUF76599.1 Cytoplasmic dynein 1 light intermediate chain 2 [Phytophthora nicotianae]) HSP 1 Score: 102.1 bits (253), Expect = 6.900e-18 Identity = 90/345 (26.09%), Postives = 140/345 (40.58%), Query Frame = 0 Query: 152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497 ESGG +D M A I WSL+D + K L+++A + + LQ+TV I +DL+RPWT +++L+QW+ L+ L E ++AY E P V S+P T S+ + GVL++NLGVPL++V +ADL E+ + +++ LR F +++GA++V+ SA +N L++YILHR YP F F+ Q S+F+P+G+DS E+V + L WPT F +I+ P Sbjct: 78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_008891036.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI55997.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK95809.1 hypothetical protein, variant [Phytophthora parasitica] >ETL49192.1 hypothetical protein, variant [Phytophthora parasitica] >ETM02248.1 hypothetical protein, variant [Phytophthora parasitica] >ETM55493.1 hypothetical protein, variant [Phytophthora parasitica] >ETN25044.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO84750.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP53825.1 hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 102.1 bits (253), Expect = 6.900e-18 Identity = 90/345 (26.09%), Postives = 140/345 (40.58%), Query Frame = 0 Query: 152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497 ESGG +D M A I WSL+D + K L+++A + + LQ+TV I +DL+RPWT +++L+QW+ L+ L E ++AY E P V S+P T S+ + GVL++NLGVPL++V +ADL E+ + +++ LR F +++GA++V+ SA +N L++YILHR YP F F+ Q S+F+P+G+DS E+V + L WPT F +I+ P Sbjct: 78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
BLAST of NO08G01000 vs. NCBI_GenBank
Match: KUF76608.1 (Cytoplasmic dynein 1 light intermediate chain 2 [Phytophthora nicotianae]) HSP 1 Score: 102.1 bits (253), Expect = 6.900e-18 Identity = 90/345 (26.09%), Postives = 140/345 (40.58%), Query Frame = 0 Query: 152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497 ESGG +D M A I WSL+D + K L+++A + + LQ+TV I +DL+RPWT +++L+QW+ L+ L E ++AY E P V S+P T S+ + GVL++NLGVPL++V +ADL E+ + +++ LR F +++GA++V+ SA +N L++YILHR YP F F+ Q S+F+P+G+DS E+V + L WPT F +I+ P Sbjct: 78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318
BLAST of NO08G01000 vs. NCBI_GenBank
Match: ETP25811.1 (hypothetical protein F441_01348 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 99.8 bits (247), Expect = 3.400e-17 Identity = 89/345 (25.80%), Postives = 139/345 (40.29%), Query Frame = 0 Query: 152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497 ESGG +D M A I WSL+D + K L+++A + + LQ+TV I +DL+RPW +++L+QW+ L+ L E ++AY E P V S+P T S+ + GVL++NLGVPL++V +ADL E+ + +++ LR F +++GA++V+ SA +N L++YILHR YP F F+ Q S+F+P+G+DS E+V + L WPT F +I+ P Sbjct: 78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWMIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318 The following BLAST results are available for this feature:
BLAST of NO08G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G01000 ID=NO08G01000|Name=NO08G01000|organism=Nannochloropsis oceanica|type=gene|length=2031bpback to top protein sequence of NO08G01000.1 >NO08G01000.1-protein ID=NO08G01000.1-protein|Name=NO08G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bpback to top Synonyms
Publications
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