NO08G00960, NO08G00960 (gene) Nannochloropsis oceanica

Overview
NameNO08G00960
Unique NameNO08G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length823
Alignment locationchr8:310839..311661 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:310839..311661 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G00960 vs. NCBI_GenBank
Match: EWM26655.1 (hypothetical protein Naga_100001g5 [Nannochloropsis gaditana])

HSP 1 Score: 104.0 bits (258), Expect = 2.000e-19
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:    1 MFFQ-RPSSSPAYRAAAWGVAILGVVAWTYWEQKKEIDTTFSQEEAAKWNERVKRKTKSRGVSTPTTGNSSS 72
            MFF+ +PSSSPAYR AAWGVAI+G+VAWTYW+QKKE DT F+ EEAAKWNERVK KTK+R    PT G   S
Sbjct:    1 MFFKNQPSSSPAYRMAAWGVAIVGLVAWTYWDQKKETDTRFTSEEAAKWNERVKGKTKARAAQPPTDGGKPS 72
The following BLAST results are available for this feature:
BLAST of NO08G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26655.12.000e-1970.83hypothetical protein Naga_100001g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008960NSK008960Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00960.1NO08G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g5gene3951Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00960.1NO08G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00960 ID=NO08G00960|Name=NO08G00960|organism=Nannochloropsis oceanica|type=gene|length=823bp
ACAGGGTGTTCCATTTCCGCGACAGACCGTGACGGCGGTGCTGTAATCAC
CAGCCAAGCAAATCGAAGGGTAGGGGGTGTAGTGTCAGCATCATCGACAG
CCTCCTTACTCTACGGAGCAACGATGTTTTTCCAAAGACCGTCATCCAGT
CCGGCGTACCGCGCAGCCGCGTGGGGGGTGGCGATTTTAGGCGTGGTCGC
CTGGACGTACTGgtaagtaagcagagtgggagaaggagtagcaagcggca
cttctgtgtagcaggccataggcagcgcccgcttcatgtcgacgtcgcag
tcgggatccgcgtaagtgttgcgtgtgctcattttctcctcgctcgttat
cttctttctggctctctcttgtggtagtcccaggtactgggccgtattgc
tacaggcaggagtcgtttccttactcctcttcccacccggcgccataaag
cgatttgatatgatgaataccaacgaaattttactggagattgactcatg
caaagtacttcagcaagcttttgagtgcttgaacttgcagaattatttcc
gattatatcctcttacttgaccccccatccctatccctatgaccacagGG
AGCAAAAGAAGGAGATAGACACGACGTTCAGCCAGGAGGAAGCCGCAAAA
TGGAACGAAAGAGTGAAGAGAAAGACCAAGTCGCGTGGCGTATCGACACC
TACTACAGGCAACTCTTCCTCCAAGTAAAAAGAATGGCGAAGCAAAGCTA
TCGAATATCCTCCTATCATGGCAAAGACAGGAGAGGAAGAAAAAAGAAGA
AAAAAGGAAGAAAAAGAAAAGTG
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protein sequence of NO08G00960.1

>NO08G00960.1-protein ID=NO08G00960.1-protein|Name=NO08G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MFFQRPSSSPAYRAAAWGVAILGVVAWTYWEQKKEIDTTFSQEEAAKWNE
RVKRKTKSRGVSTPTTGNSSSK*
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Synonyms
Publications