NO08G00920, NO08G00920 (gene) Nannochloropsis oceanica

Overview
NameNO08G00920
Unique NameNO08G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2501
Alignment locationchr8:296745..299245 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:296745..299245 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO08G00920 vs. NCBI_GenBank
Match: EWM26572.1 (hypothetical protein Naga_100001g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 229.2 bits (583), Expect = 4.500e-56
Identity = 142/335 (42.39%), Postives = 186/335 (55.52%), Query Frame = 0 
Query:    5 TSGHGRSPSNIAEHIQLVLDRETSHENLQYVKLQMDKELAEERRRIEDPDEFKRLSTFSIEDLQSRVAALQGLQAILRAFLRRVCENLVILGGKSEGDXXXXXXXXXXXXXXGLLQQKQSYEALLAEAEALVGGYLCMTFIRALVKDDTDALFHFVPGLPMPF--VSSAAPG-EGEEDEH-----DLYGRDFDLVRSEILHDVWGLNEGNNRNDLLAHRAPLEALLGPWWKPLMVGRRGHXXXXXXXXXXXXXXXXRNLLSLNDAPWLPWKWLMARLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXDHVSTEVKELHLLTLYALTDALWSKAEGR 332
            +SG  RSP +IAE I+LVLD+ TSH  LQ +K+Q+  ++AEE RRIEDP+E  RL   S+ED+ +RVAAL  +QAILRAFL R+ ENL     +++ +               LLQQ++ +EAL+AE++AL+GGY C+ F+R  V  D +   H V  L MPF  +S A+ G  G E E+       YG+DF  VR ++LH VWGL+E     DL  HRAPLE+LLG WW+PL  GRRG                   LLS+ DA W+PW+ L ARL R                              S E   L LLTLYAL DA W + +G+
Sbjct:    9 SSGLRRSPLDIAEQIRLVLDQGTSHAQLQAIKVQLQNDVAEECRRIEDPEEHNRLLMLSLEDVHARVAALHQVQAILRAFLLRIRENLSFWDDEADYE-------GREGGATALLQQQEGFEALVAESKALIGGYSCLLFVRRFVDGDDNIWHHTVDSLSMPFLPLSHASGGVRGREGEYFAGPDHRYGQDFATVRGQVLHHVWGLDE-TTPEDLPRHRAPLESLLGAWWRPLTPGRRGRSGRHPPPC---------RLLSVKDALWVPWRVLTARLLRGPETEDEEDMGLLDPGRKAGFLA-----RASAEASHLQLLTLYALVDACWVRDKGQ 321
The following BLAST results are available for this feature:
BLAST of NO08G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26572.14.500e-5642.39hypothetical protein Naga_100001g1, partial [Nanno... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008964NSK008964Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00920.1NO08G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g1gene3955Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00920.1NO08G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00920 ID=NO08G00920|Name=NO08G00920|organism=Nannochloropsis oceanica|type=gene|length=2501bp
ACAGTATATTCGACGCAAAGGAGGCACTGCCGGGATTGCAACACCACAGG
ATATCGAACAGTCTGCATTTTCCCTGCCTGTCTCCCCTACCACCGTCATC
ATCAGCGCCTGCGACTGCCTTGATCATGGCCCCTCCCACCTCTGGCCACG
GCCGCTCCCCCAGCAACATCGCCGAGCACATTCAGCTCGTCCTGGACCGG
GAGACAAGTCACGAAAATCTACAATATGTGAAATTGCAAATGGACAAAGA
GCTGGCCGAGGAGCGCCGTCGCATCGAAGACCCCGACGAATTCAAGCGAT
TGTCCACCTTTTCCATTGAGGACTTGCAATCACGTGTGGCAGCCTTGCAA
GGTTTACAAGCCATTTTGAGGGCTTTCCTGCGGAGGGTGTGTGAGAATTT
AGTTATTTTAGGGGGGAAGAGTGAGGGAGACCGAGGAGGTGGAGGAAGAG
GTGGAAGAGGAGGGGCGTCGGCAGGTTTGCTGCAACAAAAACAGTCGTAC
GAGGCCCTCTTGGCGGAGGCAGAGGCGTTAGTGGGTGGATATTTGTGTAT
GACGTTTATCCGTGCACTCGTGAAAGATGATACGGACGCTTTATTCCATT
TCGTGCCGGGTTTGCCCATGCCTTTTGTCTCTTCCGCAGCACCAGGAGAA
GGAGAGGAGGACGAGCATGACCTTTACGGCCGCGATTTTGACCTAGTGCG
CTCTGAGATTCTTCACGATGTATGGGGGTTGAACGAGGGCAACAACCGCA
ACGATTTGCTTGCGCACCGTGCCCCCTTGGAAGCTCTTCTTGGCCCGTGG
TGGAAGCCACTGATGGTCGGTCGGCGGGGCCATGGCAGTAGCAGCAGCAC
CAGCAGTAGCAGCACCAGCACCCCCCCTTCAAGAAACCTGCTATCTCTTA
ATGACGCACCGTGGCTGCCATGGAAGTGGCTGATGGCCCGTTTGCGTCGA
GAATCCGACGGGGGGGAGCCGAGCAACAGCAACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTTTTTTTGACCATGTTTCCACTGAAG
TAAAGGAACTCCACCTCCTCACCCTCTATGCATTGACAGATGCCTTGTGG
TCCAAAGCAGAAGGACGGGTGGCTATCTCCACGTTACGCACGCGGTTGGC
CGAGCCTTTCGCTGCTTACATTGGCTTGCCCCGTTCCCTTGCTCTTGCTG
CTTTGGCGTACTGGTGCGCCGATCACCCACATAGGAGTGGGGCGGACGAC
TTGGCGTTAGCTATAGGAGGGGGCAAGGGCGGTGTGGTGGCGATGGTGCT
GGGGAAGGAAGGAGGGGAGAGACGGTACCGGCAGCTGGTCTGGATGTTGG
GGTACTGGGGAAGGTACGAAGAAGCAGCACACTTGATGGCAGTGGCCCCT
CCTCCTCGCCTGACCCCCCTTGATGGCTGCCTTTTCGTCGGCGTCTTGCT
TGGACTAGGGCAGTGGGAGCAGGCGTTTGCCCGGCAGCGTGCCCTCGCCC
TCCCTCCCTCCGGCCCCCTGTCTTCCCTCCCCCCTCAGAGGAGACTGGCT
CCACTGCAGCTCTTGGCCTACAGGCTCGTGGAGAGTGGGAGGGTGGGGTG
GTTGTCGTCTCTTCCCTTCTCTCCGTTTGAGGAGCAGCATGTCGTGTCAA
CGCTGTATTTGTCAAATTTGCCGACGCGGGACGCGGCGGTGCTGGCGTTT
TTGTTGAGGAGGAAACAATTTGGGCGGGCGTGGGCCGTATTCCACTTGGT
GGCGATTGGGGAGGAAGGGGAGGAAGGGGAGGGAGGGAGAGAAGGACGGG
AAGGATTGATGAAAGCAGATTTGGCGAGGTTGGTGCAGAGTGTAGAGAGG
TTCATTCCGAAGGAAGAGCTGGAGGCAATGAGGAGGGCGAGGGGGGAGGG
GGCTCGGAGGGGGGGAGGGGGAGGAGAGGACGCGGCTTTGCTGGAAAGGT
TTGCAAGGTTAAATCCTCTGGAAGGGGGCGATGGAGAGGGGAAGGAGGAG
GAAGTGATGCAGGAAGAGGAGGGAGGAGAGCAAGAGCCACTTGGAAGACG
AAGCTACAGGCAAGGACCTGTTGTCCCTGGACGTCGTGGTGGTTTGGGAT
GGAGCCGAGGCTTAGGGGATGGCTTGGGTGTTGATATATCTGGTTCTCCT
GTGTCTACTGGTTTCGAAGCGGCGGCGGCTGCTGCTGCTGCTGGTAGTGG
TCGTAGTAGTGGCAGAGGGCAGGTAGAGATGATGGGGATGGACACACGAG
CGTTTGTCGGGCCGTCGGGACATGAGAGGGAGTGGAGCAGTAGGATGGAC
ATGGGAGTAGATGGAGGTGAAGGGAAGGTAGGGAGAGGAAAGTTGCGTTC
ACCGCCGGTGGCGTTGCGGCCGGGGCGTACGGAACGGTTCGATACATATG
GTGCAGGTGAGAAACGGGGAGGTAGCGGCGTCGGCGATGGTGGTTATGGT
AAAGGCATTTCAAAGCCTCTAGGCGGGAGGCGGGAAGAGGAGCTGATATG
A
back to top

protein sequence of NO08G00920.1

>NO08G00920.1-protein ID=NO08G00920.1-protein|Name=NO08G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=792bp
MAPPTSGHGRSPSNIAEHIQLVLDRETSHENLQYVKLQMDKELAEERRRI
EDPDEFKRLSTFSIEDLQSRVAALQGLQAILRAFLRRVCENLVILGGKSE
GDRGGGGRGGRGGASAGLLQQKQSYEALLAEAEALVGGYLCMTFIRALVK
DDTDALFHFVPGLPMPFVSSAAPGEGEEDEHDLYGRDFDLVRSEILHDVW
GLNEGNNRNDLLAHRAPLEALLGPWWKPLMVGRRGHGSSSSTSSSSTSTP
PSRNLLSLNDAPWLPWKWLMARLRRESDGGEPSNSNSSSSSSSSSSSSSS
FFDHVSTEVKELHLLTLYALTDALWSKAEGRVAISTLRTRLAEPFAAYIG
LPRSLALAALAYWCADHPHRSGADDLALAIGGGKGGVVAMVLGKEGGERR
YRQLVWMLGYWGRYEEAAHLMAVAPPPRLTPLDGCLFVGVLLGLGQWEQA
FARQRALALPPSGPLSSLPPQRRLAPLQLLAYRLVESGRVGWLSSLPFSP
FEEQHVVSTLYLSNLPTRDAAVLAFLLRRKQFGRAWAVFHLVAIGEEGEE
GEGGREGREGLMKADLARLVQSVERFIPKEELEAMRRARGEGARRGGGGG
EDAALLERFARLNPLEGGDGEGKEEEVMQEEEGGEQEPLGRRSYRQGPVV
PGRRGGLGWSRGLGDGLGVDISGSPVSTGFEAAAAAAAAGSGRSSGRGQV
EMMGMDTRAFVGPSGHEREWSSRMDMGVDGGEGKVGRGKLRSPPVALRPG
RTERFDTYGAGEKRGGSGVGDGGYGKGISKPLGGRREEELI*
back to top
Synonyms
Publications