NO08G00760, NO08G00760 (gene) Nannochloropsis oceanica

Overview
NameNO08G00760
Unique NameNO08G00760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length276
Alignment locationchr8:253565..253840 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphatidylinositol 3-kinase vps34
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:253565..253840 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO:0006629lipid metabolic process
Homology
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BLAST of NO08G00760 vs. NCBI_GenBank
Match: EWM26563.1 (phosphatidylinositol 3-kinase vps34 [Nannochloropsis gaditana])

HSP 1 Score: 88.2 bits (217), Expect = 1.400e-14
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0 
Query:   35 PHHLEAARVLNKMEGRFRLDLTDEEAVKYFVGLIHRAMGALAPQVIEVFHNLAVKTK 92
            PHH+EA++ L KME RFRLDLTD+EA K+F  L+H+A+GALAPQVIE  HNLA+KTK
Sbjct:  529 PHHIEASQSLRKMESRFRLDLTDDEAEKHFDVLVHKAIGALAPQVIEALHNLALKTK 585
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BLAST of NO08G00760 vs. NCBI_GenBank
Match: EJK67866.1 (hypothetical protein THAOC_11037 [Thalassiosira oceanica])

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-7
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 
Query:   39 EAARVLNKMEGRFRLDLTDEEAVKYFVGLIHRAMGALAPQVIEVFHNLAV 89
            +A  V+ K+E RFRLDLTDE+A  +FVGLI+ ++ ALAP+V+EVFH L+V
Sbjct:   56 DAVGVIAKVEERFRLDLTDEQAEVFFVGLINESLSALAPRVMEVFHQLSV 105
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BLAST of NO08G00760 vs. NCBI_GenBank
Match: XP_002293246.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED89707.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 62.8 bits (151), Expect = 6.500e-7
Identity = 26/50 (52.00%), Postives = 41/50 (82.00%), Query Frame = 0 
Query:   39 EAARVLNKMEGRFRLDLTDEEAVKYFVGLIHRAMGALAPQVIEVFHNLAV 89
            +A  +++K+E RF+L+LTDE+A  YF+GLI  ++ ALAP+V+E+FH L+V
Sbjct:  519 DATGIISKLEDRFKLELTDEQAESYFLGLISESLSALAPRVMEMFHQLSV 568
The following BLAST results are available for this feature:
BLAST of NO08G00760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26563.11.400e-1470.18phosphatidylinositol 3-kinase vps34 [Nannochlorops... [more]
EJK67866.11.700e-760.00hypothetical protein THAOC_11037 [Thalassiosira oc... [more]
XP_002293246.16.500e-752.00predicted protein, partial [Thalassiosira pseudona... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008981NSK008981Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00760.1NO08G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100084g15gene3969Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00760.1NO08G00760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00760 ID=NO08G00760|Name=NO08G00760|organism=Nannochloropsis oceanica|type=gene|length=276bp
ATGATGATGATGATGATGGGAAGTAGTTTGAATCTAAGCGGTAGCATGAA
ATCGACGACGACAGCAACGGCAACAGTAACAACGCCAGCAGCATTGCCGT
CGCCACATCATCTTGAAGCTGCCCGTGTTTTAAATAAGATGGAAGGGCGG
TTTCGTTTGGACTTGACCGATGAGGAGGCGGTGAAGTATTTTGTGGGGTT
GATCCATAGGGCGATGGGTGCGTTAGCGCCGCAGGTGATCGAGGTTTTCC
ACAATCTCGCGGTGAAGACGAAATGA
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protein sequence of NO08G00760.1

>NO08G00760.1-protein ID=NO08G00760.1-protein|Name=NO08G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MMMMMMGSSLNLSGSMKSTTTATATVTTPAALPSPHHLEAARVLNKMEGR
FRLDLTDEEAVKYFVGLIHRAMGALAPQVIEVFHNLAVKTK*
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Synonyms
Publications