NO08G00740, NO08G00740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G00740 vs. NCBI_GenBank
Match: EWM26565.1 (cold-inducible rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 184.5 bits (467), Expect = 2.600e-43 Identity = 94/116 (81.03%), Postives = 101/116 (87.07%), Query Frame = 0 Query: 18 EAVPDTPVEET-PNAEEPLNDEGKLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDPNAPRPPRRSYRG 133 EAV T VEET N EE LNDEGKLY+GNL+FKTTEDGLREAF HGE++FARVISDRD+GRSRGFGFVTF K++AQ AIDALNETELDGR IRVNFAQPRDPNAPR P RSYRG Sbjct: 24 EAVASTAVEETSKNEEEALNDEGKLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRRPPRSYRG 139
BLAST of NO08G00740 vs. NCBI_GenBank
Match: XP_016609239.1 (hypothetical protein SPPG_04290 [Spizellomyces punctatus DAOM BR117] >KND01200.1 hypothetical protein SPPG_04290 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 107.8 bits (268), Expect = 3.100e-20 Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 0 Query: 40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDPNA 123 K++VGNL++ TT+D L AF ++GEIT A V+ DR++GRSRGFGFVTFA +D+AQ AI +N+ ELDGRT+RVN A R PN+ Sbjct: 4 KVFVGNLSWSTTDDTLHSAFSTYGEITDAVVLKDRETGRSRGFGFVTFAGEDQAQAAIQGMNDQELDGRTVRVNLANERPPNS 86
BLAST of NO08G00740 vs. NCBI_GenBank
Match: PIV22324.1 (RNA-binding protein [Deltaproteobacteria bacterium CG03_land_8_20_14_0_80_45_14] >PIX24299.1 RNA-binding protein [Deltaproteobacteria bacterium CG_4_8_14_3_um_filter_45_9]) HSP 1 Score: 106.7 bits (265), Expect = 6.800e-20 Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = 0 Query: 40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDP 121 KL+VG L++ T +DGLR+AF S+GEIT A+VI+DRD+GRSRGFGFVTFA+ D+A+ AI ++ T LDG+TI+VN AQ + P Sbjct: 4 KLFVGGLSWDTKDDGLRQAFASYGEITEAKVITDRDTGRSRGFGFVTFAQDDDAKTAISKMDGTNLDGKTIKVNEAQEKSP 84
BLAST of NO08G00740 vs. NCBI_GenBank
Match: PLY13490.1 (RNA-binding protein [Sedimenticola sp.]) HSP 1 Score: 105.1 bits (261), Expect = 2.000e-19 Identity = 46/87 (52.87%), Postives = 66/87 (75.86%), Query Frame = 0 Query: 41 LYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDPNAPRPPR 128 +YVGNL+++ T+D LR+ F HGE++ A++I DR++GRS+GFGFV + +AQ AIDALN+ ++ GR +RVN A+PR N PR PR Sbjct: 3 IYVGNLSYRMTDDELRDIFAEHGEVSSAKIIMDRETGRSKGFGFVEMPDNKQAQEAIDALNDKDISGRNLRVNEARPRKDNGPRQPR 89
BLAST of NO08G00740 vs. NCBI_GenBank
Match: CEH16951.1 (rna-binding domain-containing protein [Ceraceosorus bombacis]) HSP 1 Score: 104.0 bits (258), Expect = 4.400e-19 Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 0 Query: 40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPR 119 K+YVGNL++ TTED L AF +HG++T V+ DRD+GRSRGFGFVTF+ + EA AI ALNETELDGR IRVN A R Sbjct: 4 KVYVGNLSWNTTEDSLSRAFSAHGQLTDYVVMRDRDTGRSRGFGFVTFSSQHEADSAIAALNETELDGRRIRVNMANSR 82
BLAST of NO08G00740 vs. NCBI_GenBank
Match: OPL18730.1 (RNA-binding protein [Candidatus Aegiribacteria bacterium MLS_C]) HSP 1 Score: 104.0 bits (258), Expect = 4.400e-19 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 0 Query: 40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPR 119 KL+VG L++ TT+ LREAF ++G +T A+VI +RDSGRSRGFGFVTF +D+A A+DA+N+TELDGR IRV+FA + Sbjct: 4 KLFVGGLSWSTTDKELREAFEAYGSVTEAKVIKERDSGRSRGFGFVTFENEDDATAAVDAMNDTELDGRNIRVDFAHDK 82
BLAST of NO08G00740 vs. NCBI_GenBank
Match: XP_015622053.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Oryza sativa Japonica Group] >XP_015622054.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Oryza sativa Japonica Group] >CAA05729.1 OsGRP2 [Oryza sativa Japonica Group] >BAB86134.1 OsGRP2 [Oryza sativa Japonica Group] >BAB92683.1 OsGRP2 [Oryza sativa Japonica Group] >BAF07109.1 Os01g0916600 [Oryza sativa Japonica Group] >EAY76961.1 hypothetical protein OsI_04919 [Oryza sativa Indica Group] >EAZ14617.1 hypothetical protein OsJ_04542 [Oryza sativa Japonica Group] >BAG86996.1 unnamed protein product [Oryza sativa Japonica Group] >BAH00599.1 unnamed protein product [Oryza sativa Japonica Group] >BAS75890.1 Os01g0916600 [Oryza sativa Japonica Group]) HSP 1 Score: 103.6 bits (257), Expect = 5.800e-19 Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = 0 Query: 40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDP 121 KL+VG L++ T +D L+EAF S G++T ARVI+DR+SGRSRGFGFV+FA D+A+ A+DA++ EL+GR+IRVNFA R P Sbjct: 38 KLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANERPP 118
BLAST of NO08G00740 vs. NCBI_GenBank
Match: XP_001730695.1 (hypothetical protein MGL_2149 [Malassezia globosa CBS 7966] >EDP43481.1 hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]) HSP 1 Score: 103.2 bits (256), Expect = 7.600e-19 Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 0 Query: 40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPRDP 121 K+YVGNL++ TT+DGL +AF +G++T V+ DRDSGRSRGFGFVTF + EA AI ALNE ELDGR IRVN A R P Sbjct: 3 KVYVGNLSWSTTDDGLAQAFSPYGQLTDYIVMKDRDSGRSRGFGFVTFMTQQEADAAIMALNEQELDGRRIRVNMANSRPP 83
BLAST of NO08G00740 vs. NCBI_GenBank
Match: KPK56191.1 (RNA-binding protein [Gammaproteobacteria bacterium SG8_31]) HSP 1 Score: 102.8 bits (255), Expect = 9.900e-19 Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0 Query: 41 LYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQPR-DPNAPR 125 +YVGNLAF+TTED LR+ F HGE++ ++I+DR++GRSRGFGFV + EA+ AI+A+N+T++ GR +RVN A+PR D APR Sbjct: 3 IYVGNLAFRTTEDDLRQLFAEHGEVSSVKIIADRETGRSRGFGFVEMPNQAEAEAAINAINDTDVGGRNLRVNEARPRTDRPAPR 87
BLAST of NO08G00740 vs. NCBI_GenBank
Match: PJB48864.1 (RNA-binding protein [Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12]) HSP 1 Score: 102.4 bits (254), Expect = 1.300e-18 Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0 Query: 40 KLYVGNLAFKTTEDGLREAFGSHGEITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVNFAQ 117 KL+VG L++ T D LR AF +HGE+T A VISDRD+GRSRGFGFVT+A+ ++AQ AI A++ TELDGRT+ VN AQ Sbjct: 4 KLFVGGLSWGTDNDALRTAFEAHGEVTDAVVISDRDTGRSRGFGFVTYADSNDAQKAISAMDGTELDGRTVNVNLAQ 80 The following BLAST results are available for this feature:
BLAST of NO08G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G00740 ID=NO08G00740|Name=NO08G00740|organism=Nannochloropsis oceanica|type=gene|length=1923bpback to top protein sequence of NO08G00740.1 >NO08G00740.1-protein ID=NO08G00740.1-protein|Name=NO08G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bpback to top Synonyms
Publications
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