NO08G00580, NO08G00580 (gene) Nannochloropsis oceanica

Overview
NameNO08G00580
Unique NameNO08G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2572
Alignment locationchr8:210852..213423 -

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Properties
Property NameValue
Descriptionproteasome subunit PAB1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:210852..213423 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR023332Proteasome_suA-type
IPR034644Proteasome_subunit_alpha2
IPR001353Proteasome_sua/b
IPR000426Proteasome_asu_N
Homology
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: EWM26547.1 (proteasome subunit alpha type 2 [Nannochloropsis gaditana])

HSP 1 Score: 452.6 bits (1163), Expect = 8.100e-124
Identity = 226/236 (95.76%), Postives = 233/236 (98.73%), Query Frame = 0 
Query:   19 MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDEAN 255
            MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDE++VQK+ELINPSTGFVFSGLGPDYRVLVRKSRKRAQSY+LQYRE QPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGW+ATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNE NIEIGIIGADRKF ILTPA+V+DYLDEAN
Sbjct:    1 MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDEAHVQKIELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYFLQYREHQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWQATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNESNIEIGIIGADRKFRILTPAEVKDYLDEAN 236
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: CBJ32748.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 375.9 bits (964), Expect = 9.600e-101
Identity = 189/234 (80.77%), Postives = 206/234 (88.03%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDEAN 255
            GDSAYSFSLTTFSRTGKLLQIEYAL A QQGKTSLGI+ATNGVVI TEKKLPSVLID   V K+ L+ PSTGFV+SGLGPDYRVL RKSRK+AQ+YY  YRE QPVGQLVRDTAGVMQE+TQ GGVRPFG+SLLVAGYDD+GPQL+QVDPSGAYFGWKATAIGKN VNAKNFLEKR++EE ELDDAVHTALLT+REGFEGEM E NIE      DRKF IL+  + +D+LDEAN
Sbjct:    2 GDSAYSFSLTTFSRTGKLLQIEYALMAVQQGKTSLGIKATNGVVIVTEKKLPSVLIDSDEVSKISLVTPSTGFVYSGLGPDYRVLARKSRKQAQAYYNIYREVQPVGQLVRDTAGVMQEYTQRGGVRPFGVSLLVAGYDDDGPQLYQVDPSGAYFGWKATAIGKNFVNAKNFLEKRFSEEAELDDAVHTALLTMREGFEGEMTEKNIE------DRKFRILSEQEGKDFLDEAN 229
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: XP_005848584.1 (hypothetical protein CHLNCDRAFT_48764 [Chlorella variabilis] >EFN56482.1 hypothetical protein CHLNCDRAFT_48764 [Chlorella variabilis])

HSP 1 Score: 354.8 bits (909), Expect = 2.300e-94
Identity = 168/232 (72.41%), Postives = 202/232 (87.07%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            G+SAYSFSLTTFS +GKL+QIEYAL+A   G TSLGIRAT+GVV+ATEKKLPS+L+DES VQK+ L+ P+ G  +SG+GPD RVLVRK+RK  Q YY QY EQ PV QL R+TA VMQEFTQSGGVRPFG+SLL+AGYDDNGPQL+Q+DPSG+YF WKA+AIGKN VNAK FLEKRY+E+MEL+DA+HTALLTL+EGFEGE++  NIE+ ++G DRKF +LTPA+V+DYL E
Sbjct:    2 GESAYSFSLTTFSPSGKLVQIEYALAAVNAGATSLGIRATDGVVLATEKKLPSILVDESTVQKISLLTPNVGMTYSGMGPDSRVLVRKARKSGQVYYRQYHEQIPVAQLCRETAAVMQEFTQSGGVRPFGVSLLMAGYDDNGPQLYQIDPSGSYFAWKASAIGKNMVNAKTFLEKRYSEDMELEDAIHTALLTLKEGFEGELSGDNIEVAVVGEDRKFRVLTPAEVQDYLQE 233
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: XP_003575428.1 (proteasome subunit alpha type-2 [Brachypodium distachyon] >KQK00469.1 hypothetical protein BRADI_3g49610v3 [Brachypodium distachyon])

HSP 1 Score: 350.5 bits (898), Expect = 4.300e-93
Identity = 165/232 (71.12%), Postives = 206/232 (88.79%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            GDS YSFSLTTFS +GKL+QIE+AL+A   G+TSLGI+A NGVVIATEKKLPS+L+DE+ VQK++ + P+ G V+SG+GPD+RVLVRKSRK+AQ YY  Y+E  PV QLVR+TA VMQEFTQSGGVRPFG+SLL+AGYDDNGPQL+QVDPSG+YF WKA+A+GKN  NAK FLEKRY E+MELDDA+HTA+LTL+EGFEG+++ +NIEIG+I ADR+F +LTPA+++D+L+E
Sbjct:    2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGQISANNIEIGVIRADREFKVLTPAEIKDFLEE 233
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: PRW44892.1 (20S proteasome alpha subunit B [Chlorella sorokiniana])

HSP 1 Score: 350.5 bits (898), Expect = 4.300e-93
Identity = 168/232 (72.41%), Postives = 200/232 (86.21%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            G+SAYSFSLTTFS +GKL+QIEYAL+A   G TSLGIRATNGVV+ATEKKLPS+L+DES VQKV L+ P+ G  +SG+GPD RVLVRK+RK  Q Y+ QY EQ PV QL R+TA VMQEFTQSGGVRPFG+SLL+AGYDD+GPQL+Q+DPSG+YF WKA+AIGKN VNAK FLEKRY E+MEL+DA+HTALLTL+EGFEGE++  NIE+ ++G DRKF +LTPA+V DYL E
Sbjct:    2 GESAYSFSLTTFSPSGKLVQIEYALNAVNAGATSLGIRATNGVVLATEKKLPSILVDESTVQKVSLLTPNIGMTYSGMGPDSRVLVRKARKSGQVYFRQYHEQIPVAQLCRETAAVMQEFTQSGGVRPFGVSLLMAGYDDHGPQLYQIDPSGSYFAWKASAIGKNMVNAKTFLEKRYAEDMELEDAIHTALLTLKEGFEGELSGDNIEVAVVGEDRKFRVLTPAEVADYLAE 233
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: XP_008803137.1 (PREDICTED: proteasome subunit alpha type-2-A [Phoenix dactylifera])

HSP 1 Score: 350.1 bits (897), Expect = 5.700e-93
Identity = 170/232 (73.28%), Postives = 203/232 (87.50%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            GDS YSFSLTTFS +GKL+QIE+AL+A   G+TSLGI+A NGVVIATEKKLPS+L+DE+ VQK++L+  + G V+SG+GPD RVLVRKSRK+AQ YY  Y+E  PV QLVR+TA VMQEFTQSGGVRPFG+SLLVAGYDDNGPQL+QVDPSG+YF WKA+A+GKN  NAK FLEKRY ++MELDDAVHTA+LTL+EGFEG+++  NIEIGIIGADRKF +LTPA++ DYL E
Sbjct:    2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLMTTNIGVVYSGMGPDSRVLVRKSRKQAQQYYRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDNGPQLYQVDPSGSYFAWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISSKNIEIGIIGADRKFRVLTPAEIDDYLAE 233
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: PSC68077.1 (proteasome subunit alpha type [Micractinium conductrix])

HSP 1 Score: 349.7 bits (896), Expect = 7.400e-93
Identity = 167/232 (71.98%), Postives = 198/232 (85.34%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            GDSAYSFSLTTFS +GKL+QIEYAL+A   G TSLGIRATNGVV+ATEKKLPS+L+DE  VQK+ L+ P+ G  +SG+GPD RVLVRK+RK  Q YY QY E  PV QL R+TA VMQEFTQSGGVRPFG+SLL+AGYDDNGPQL+Q+DPSG+YF WKA+AIGKN VNAK FLEKRY E+MEL+DA+HTALLTL+EGFEGE++  NIE+ ++G DR+F +LTPA+V DYL E
Sbjct:    2 GDSAYSFSLTTFSPSGKLVQIEYALTAVAAGATSLGIRATNGVVLATEKKLPSLLVDEGTVQKISLLTPNIGLTYSGMGPDSRVLVRKARKSGQVYYRQYHEHIPVAQLCRETAAVMQEFTQSGGVRPFGVSLLMAGYDDNGPQLYQIDPSGSYFAWKASAIGKNMVNAKTFLEKRYAEDMELEDAIHTALLTLKEGFEGELSGDNIEVAVVGEDRQFRVLTPAEVADYLQE 233
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: XP_020155700.1 (proteasome subunit alpha type-2 [Aegilops tauschii subsp. tauschii] >EMS55235.1 Proteasome subunit alpha type-2 [Triticum urartu] >CDM84191.1 unnamed protein product [Triticum aestivum])

HSP 1 Score: 349.4 bits (895), Expect = 9.700e-93
Identity = 164/232 (70.69%), Postives = 206/232 (88.79%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            GDS YSFSLTTFS +GKL+QIE+AL+A   G+TSLGI+A NGVVIATEKKLPS+L+DE+ VQK++ + P+ G V+SG+GPD+RVLVRKSRK+AQ YY  Y+E  PV QLVR+TA VMQEFTQSGGVRPFG+SLL+AGYDDNGPQL+QVDPSG+YF WKA+A+GKN  NAK FLEKRY E+MELDDA+HTA+LTL+EG+EG+++ +NIEIG+I ADR+F +LTPA+++D+L+E
Sbjct:    2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGVIRADREFKVLTPAEIKDFLEE 233
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: NP_001132248.1 (proteasome subunit alpha type [Zea mays] >XP_002452496.1 proteasome subunit alpha type-2 [Sorghum bicolor] >ACF81020.1 unknown [Zea mays] >ACF87666.1 unknown [Zea mays] >ACG40720.1 proteasome subunit alpha type 2 [Zea mays] >ACG41786.1 proteasome subunit alpha type 2 [Zea mays] >EES05472.1 hypothetical protein SORBI_3004G224900 [Sorghum bicolor] >AQK72935.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72936.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72937.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72938.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72940.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72941.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72944.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72945.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72946.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72947.1 Proteasome subunit alpha type-2-B [Zea mays] >AQK72948.1 Proteasome subunit alpha type-2-B [Zea mays])

HSP 1 Score: 349.4 bits (895), Expect = 9.700e-93
Identity = 164/232 (70.69%), Postives = 206/232 (88.79%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            GDS YSFSLTTFS +GKL+QIE+AL+A   G+TSLGI+A NGVVIATEKKLPS+L+DE+ VQK++ + P+ G V+SG+GPD+RVLVRKSRK+AQ YY  Y+E  PV QLVR+TA VMQEFTQSGGVRPFG+SLL+AGYDDNGPQL+QVDPSG+YF WKA+A+GKN  NAK FLEKRY E+MELDDA+HTA+LTL+EG+EG+++ +NIEIGII ADR+F +L+PA+++D+L+E
Sbjct:    2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQALTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKEHIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISSNNIEIGIIRADREFKVLSPAEIKDFLEE 233
[Close]
BLAST of NO08G00580 vs. NCBI_GenBank
Match: XP_010935550.1 (PREDICTED: proteasome subunit alpha type-2-A [Elaeis guineensis])

HSP 1 Score: 349.4 bits (895), Expect = 9.700e-93
Identity = 170/232 (73.28%), Postives = 203/232 (87.50%), Query Frame = 0 
Query:   21 GDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDE 253
            GDS YSFSLTTFS +GKL+QIE+AL+A   G+TSLGI+A NGVVIATEKKLPS+L+DE+ VQK++L+  + G V+SG+GPD RVLVRKSRK+AQ YY  Y+E  PV QLVR+TA VMQEFTQSGGVRPFG+SLLVAGYDDNGPQL+QVDPSG+YF WKA+A+GKN  NAK FLEKRY ++MELDDAVHTA+LTL+EGFEG+++  NIEIGIIGADRKF +LTPA++ DYL E
Sbjct:    2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQLMTTNIGVVYSGMGPDSRVLVRKSRKQAQQYYRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDNGPQLYQVDPSGSYFAWKASAMGKNVSNAKTFLEKRYTDDMELDDAVHTAILTLKEGFEGQISGKNIEIGIIGADRKFRVLTPAEIDDYLAE 233
The following BLAST results are available for this feature:
BLAST of NO08G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26547.18.100e-12495.76proteasome subunit alpha type 2 [Nannochloropsis g... [more]
CBJ32748.19.600e-10180.77conserved unknown protein [Ectocarpus siliculosus][more]
XP_005848584.12.300e-9472.41hypothetical protein CHLNCDRAFT_48764 [Chlorella v... [more]
XP_003575428.14.300e-9371.12proteasome subunit alpha type-2 [Brachypodium dist... [more]
PRW44892.14.300e-9372.4120S proteasome alpha subunit B [Chlorella sorokini... [more]
XP_008803137.15.700e-9373.28PREDICTED: proteasome subunit alpha type-2-A [Phoe... [more]
PSC68077.17.400e-9371.98proteasome subunit alpha type [Micractinium conduc... [more]
XP_020155700.19.700e-9370.69proteasome subunit alpha type-2 [Aegilops tauschii... [more]
NP_001132248.19.700e-9370.69proteasome subunit alpha type [Zea mays] >XP_00245... [more]
XP_010935550.19.700e-9373.28PREDICTED: proteasome subunit alpha type-2-A [Elae... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009006NSK009006Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00580.1NO08G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581963gene_3388Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100409g5gene3983Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00580.1NO08G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00580 ID=NO08G00580|Name=NO08G00580|organism=Nannochloropsis oceanica|type=gene|length=2572bp
AGACGATGCGTAAAAGCGTCCCCTTTGTTTGTTGTGTTGTGTTACGTTGT
GTGAGGGTTTAGGGAGTGCAATAGATACGAGAAAGAGTAAGGGTTGAGTG
AGGCGCAGGGTGCGATGAGGTCAGGACGTGACACGAGCAGTGTGTGGATA
GAGGAAGGACACGGTAGCGTCAATGTGTTGCCCAACTGTTATTGAGAAAC
TACCAGTTGTCGACGCAGAAAAAGGAAAAGTGCGTGCCTGCTTCGAGATG
CGTGCCTTCCACAACGAGCTTGGTGTTGCAGCGGACTTGTTGGTCTTGTG
TATCGCCGTGGCTCCTGTGGACCGACCATGAGCAAGTAAGTCATCAGCAG
CATCGCCCGAAGGGCACGAACAGGGGCAACGAACTTCTTCGTCGAGGTGC
TTGCTGCCTGCGAGGCTTATTCCGTCTCGTGCCCCCTCTCGCACTTTAAA
TGTACACACCAACTTATGCCGCATCCGCACCCGCCGCACCCACAGTCAAA
GCCATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTACATTCTCCCG
CACGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGGCGCAGCAAG
GCAAAACGTCCTTGGGCATCCGTGgtacgttttacgatatggacattgaa
tatttggactcagaaagacagtgaagtagggtctgtatgtactgtgtggc
gggtgggcgcgattcaatcaggaagagcatacgcatagggtagacagtca
tcgtcatactccatatgcttgcttccctggcaccctactttcccttgacg
ctcatgaaatcaaatttattgcatgcctacatgactgaggctaagactgt
gtttgtatagaagctgtatctctttttctgccggcgcaggcaccagtcaa
gtcaaggtttttccttccctcccttcccctccccatgtagCTACGAACGG
TGTGGTCATCGCCACCGAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGT
CCTATGTGCAAAAAGTTGAGCTCATAAATCCCTCCACGGGCTTTGTATTC
TCGGGCTTGGGGCCTGACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGgt
atggagggagggagggagggagggtgtctgactggatgcatgtaatcatc
gagccgttattgagatattttttcatcgtaccttcggttgttgtatgtgt
tggtggcgcggctggtcgctgggtgtcaccgtggtggtgctattgaagcc
cctaagctgtctcacgcaattaatttttcattccctcactcacacactcc
ctcctcattccctccctccatccgtccccccagCGCGCTCAGTCCTACTA
CCTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCGTTCGAGATACCG
CGGGCGTCATGCAGgtaccctccctcccgccgtccctctcgccctccctc
cctccatccgctccctccacccgctcattccttttcttgtcttcctcatc
gctccctctctctctccttccctcaccgccgcacagGAATTTACGCAGTC
TGGTGGTGTGCGTCCCTTCGGCTTGTCCTTGCTAGTAGCCGGCTATGATG
ACAACGGACCCCAGCTCTTCCAGgtacggagggagggagagggagggagg
gaccgtgaagaagaatcaggtggcatttgcgagatttagtgagcgtcttt
gacagcataccaatcagagtcgttcagacccctctttccctccctgcctt
tctccctccctccccggtttgttcatgcacagcgagcgtctttgatacaa
gtggacggatgattaaacccctccttccctccctccctccctctctccct
ctctctagGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACGGCT
ATCGGGAAAAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTACAA
CGAGGAGATGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGTTGC
GCGAAGGCTTCGAAGGgtacgttcctccctgtctgccttctcctgtgtgt
acatgccttgctgcatgtgcgtggctttcctttttacttcttctttcctc
tctccctcttttttattcccttttcaacctccctcgcgctgcgccggtgg
ttgttgaaggcaacgatgctgacagtcagtcgcagcaattaccagacaat
cggatgcatgtccataacttccttcctccctccctccctccctccctccc
tccctccacagGGAAATGAACGAGCACAACATTGAGATCGGCATCATAGG
CGCCGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCAGAGACTACC
TCGACGAGGCCAATTAGTAGAAGAGGAAGGGGGGGGCGGGGGAAGGAAGG
AGGGAGCGAGGGAGGGAGCGAGGGAAGAAATGATGTGGAGTCGACGGGGG
GTGACGGAGGAAAGGGGGATGGGGCGTCGGGAAGAAGAATCGGAAAAGCA
AGACAGACAGACAGAAAAGAAAAGAAGATCTGGTGAAATGAAAAGGAAAG
GAAATGAACGATTTTTGGGCTA
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protein sequence of NO08G00580.1

>NO08G00580.1-protein ID=NO08G00580.1-protein|Name=NO08G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MYTPTYAASAPAAPTVKAMSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQ
GKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGP
DYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFG
LSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEE
MELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYL
DEAN*
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Synonyms
Publications