NO08G00550, NO08G00550 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00550
Unique Name	NO08G00550
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2619
Alignment location	chr8:202455..205073 +

Link to JBrowse

Properties


Property Name	Value
Description	Carbon catabolite repressor protein 4 homolog 3

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:202455..205073 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036691	Endo/exonu/phosph_ase_sf
IPR005135	Endo/exonuclease/phosphatase

Homology

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BLAST of NO08G00550 vs. NCBI_GenBank
Match: XP_008607011.1 (hypothetical protein SDRG_03166 [Saprolegnia diclina VS20] >EQC39739.1 hypothetical protein SDRG_03166 [Saprolegnia diclina VS20])

HSP 1 Score: 98.6 bits (244), Expect = 9.100e-17
Identity = 119/520 (22.88%), Postives = 170/520 (32.69%), Query Frame = 0

Query:  291 PSPSSSHPLPPSSSSGFTLLSWNVLASSLVDRSFLGFATDE--ELAWCVRGPRIQAVLREMGAEVICLQEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENKLSSTTSASLPSFPTYTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYRVPG------------------------------------RGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKREGGRGREEGVMPFEEVAWGGGRXXXXXXXXXXXXMRHFGAGTAMGVFRPHAGREGWREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIWPPHGDWSLPSHPPLHHSLSLVSAYAHRPSAHTTGEPAFTSYHGKFKGAVDYIWYNGKEXXXXXXXXXXXRLRCVEFWGMPTVGELRSQV-GLPCRACPSDHLPLV 772
            P P S +  PP ++ GF ++ +NVLA  L   S       +  + +W  R  R+   +    A++ICLQE D                                            E +L+            Y G  ++RTG   +DG +++ +   FE +E+  +EY+VPG                                    RGDVKLAQ Q+L  ++  LQ  +    +++CGDFN TP S LYA  ATG LD D+L    +                  +V+  G              +RH GAGTA G F P                                                                                        P    P   ++      + H  +L SAYA  P+  TTGEP  T+YH +F G VDYIW++               L+C     MP       ++ GLP +   SDHL LV
Sbjct:    3 PRPYSVYSDPP-ATGGFRVVCFNVLADYLAAESQQHARPYDAYKFSWAFRRTRLLREILSWRADIICLQEVD--------------------------------------HFVDYFEPELAQ---------HGYVGRAQQRTGETTLDGCAIFVKTSTFEMLETVGIEYKVPGHDVLDRDNVALALVLQSVSDGAKMVVATTHILFNPRRGDVKLAQCQLLFEKLAALQASHASDRLLLCGDFNFTPCSPLYALFATGVLDCDRLQPPDLSC----------------QVSPSGSFFHERRHVETEAELRHHGAGTAAGRFDP------------------------------------------------------------------------------------AQRGPSKRSPPSKFNKAIGGTVSHPFALKSAYAQHPTEATTGEPLVTTYHNRFFGTVDYIWFSA------------PTLQCTGVVAMPDEAAFFKRIRGLPTQHVSSDHLSLV 362

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BLAST of NO08G00550 vs. NCBI_GenBank
Match: XP_012195419.1 (hypothetical protein SPRG_01662 [Saprolegnia parasitica CBS 223.65] >KDO33783.1 hypothetical protein SPRG_01662 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 95.1 bits (235), Expect = 1.000e-15
Identity = 120/520 (23.08%), Postives = 173/520 (33.27%), Query Frame = 0

Query:  291 PSPSSSHPLPPSSSSGFTLLSWNVLASSLVDRSFLGFATDE--ELAWCVRGPRIQAVLREMGAEVICLQEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENKLSSTTSASLPSFPTYTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYRVPG------------------------------------RGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKREGGRGREEGVMPFEEVAWGGGRXXXXXXXXXXXXMRHFGAGTAMGVFRPHAGREGWREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIWPPHGDWSLPSHPPLHHSLSLVSAYAHRPSAHTTGEPAFTSYHGKFKGAVDYIWYNGKEXXXXXXXXXXXRLRCVEFWGMPTVGELRSQV-GLPCRACPSDHLPLV 772
            P P S++  PP ++ GF ++ +NVLA  L   S       +  + +W  R  R+   +    A++ICLQE D                                            E +L+            Y G  K+RTG   +DG +++ +   FE +E+  +EY+VPG                                    RGDVKLAQ Q+L   +  LQ  +    +++CGDFN TP S LYA  +TG L+ D+L    +                  +V+  G               RH GAGTA G F P   R G                                                                                  P    P   ++      + H  +L SAYA RP+  TTGEP  T++H +F G+VDYIW++               L+C     MP       ++ GLP +   SDHL LV
Sbjct:    3 PRPYSAYSDPP-ATGGFRVVCFNVLADYLAAESQQHARPYDAYKFSWAFRRTRLLREMLTWQADIICLQEVD--------------------------------------HFTDYFEPELAQ---------HGYIGRAKQRTGETTLDGCAIFVKASTFEILETVGIEYKVPGHDVLDRDNVALALVLRSIGDGAVLIAATTHILFNPRRGDVKLAQCQLLFETLAALQASHASDRLLLCGDFNFTPCSPLYALFSTGALNCDRLQPPDLSC----------------QVSPSGSFFHERRHVETEDEARHHGAGTAAGRFDP--TRRG----------------------------------------------------------------------------------PTKRSPPSKFNKAIGGTVSHPFALASAYAQRPTELTTGEPLVTTFHERFFGSVDYIWFSA------------PTLQCTGVVEMPDHAAFFKRIRGLPTQHVSSDHLSLV 362

[Close]

BLAST of NO08G00550 vs. NCBI_GenBank
Match: XP_009824634.1 (hypothetical protein H257_02618 [Aphanomyces astaci] >ETV86162.1 hypothetical protein H257_02618 [Aphanomyces astaci])

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-13
Identity = 101/388 (26.03%), Postives = 130/388 (33.51%), Query Frame = 0

Query:  422 YTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYRVPG------------------------------------RGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKREGGRGREEGVMPFEEVAWG--GGRXXXXXXXXXXXXMRHFGAGTAMGVFRPHAGREGWREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIWPPHGDWSLPSHPPLHHSLSLVSAYAHRPSAHTTGEPAFTSYHGKFKGAVDYIWYNGKEXXXXXXXXXXXRLRCVEFWGMPTVGELRSQVGLPCRACPSDHLPLV 772
            Y G  K+RTGA+  DG S++ +   F+     E+E+  PG                                    RGDVKLAQ+Q+LL  +  L   +    +++CGDFN TP SALYA+++ GRLD   +      G+           +  EE   G  GG              RH G GTA   F   + R   R                                                                                    PPH    L  H    H L L SAYA  P+A T+GEP  TSYH +F G VDYIWY                + CV    +P V   R+   LP R   SDH+ LV
Sbjct:  176 YVGKHKQRTGAETHDGCSIFVKEDLFQIEAEIELEFHQPGHAILDRHNVALALSLTYKPTKDTVVVATTHILFNPRRGDVKLAQMQLLLSTLHALNIPH----VILCGDFNVTPKSALYAFLSKGRLDGTTVYTGDASGQFAHRNSYFHNDVHDEEGDQGVDGG-----------CVTRHQGNGTAAYRFDAPSSRRSRRPH----------------------------------------------------------------------------------PPHE--CLGVHAV--HELPLASAYAQHPTAETSGEPFATSYHDRFLGTVDYIWY--------------ANVVCVGVVELPPVSFFRNIRSLPTRDLGSDHVSLV 448

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BLAST of NO08G00550 vs. NCBI_GenBank
Match: OQR84962.1 (hypothetical protein ACHHYP_12517 [Achlya hypogyna])

HSP 1 Score: 87.4 bits (215), Expect = 2.100e-13
Identity = 97/405 (23.95%), Postives = 134/405 (33.09%), Query Frame = 0

Query:  422 YTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYRVPG------------------------------------RGDVKLAQLQMLLGRMERLQQRYPEAG---IVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKREGGRGREEGVMPFEEVAWGGGRXXXXXXXXXXXXMRHFGAGTAMGVFRPHAGREGWREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIWPPHGDWSLPSHPPLHHSLSLVSAYAHRPSAHTTGEPAFTSYHGKFKGAVDYIWYNGKEXXXXXXXXXXXRLRCVEFWGMPTVGELRSQV-GLP------------CRAC---PSDHLPLV 772
            Y G +++RTG    DG +++ +   FE VE   +EY+VPG                                    RGDVK+AQ +MLL R+E LQ  +   G   +++CGDFN TP S LY   A+G LD  +L    +  +                     G             +RH GAGTA G +RP  G   +R                                                                                   + P   ++      + H+ +  SAYA  P+  TTGEP  T++H +F G VDYIWY                L C+    MP   +  S++  LP            CR C    SDHL LV
Sbjct:  156 YVGYYQQRTGDTTFDGCAIFVKSSTFEVVEQVGIEYKVPGDPILDRDNVALALALRATADASTIVVATTHILFNPRRGDVKVAQCKMLLERLESLQAAHCPDGAGRVLLCGDFNFTPCSPLYELFASGTLDCSELQSAELSCQLN-----------------AKGSFFHERRHDDDGVVRHGGAGTAWGKYRP--GHPAFRTK---------------------------------------------------------------------------------FVPSALYNQVVGGVVSHAFAFQSAYAQSPTDLTTGEPIATTHHERFYGTVDYIWYTA------------PTLTCIGVVEMPDEAQFFSRIRALPTQYVLVMRSEPSCRCCSNVSSDHLSLV 448

[Close]

BLAST of NO08G00550 vs. NCBI_GenBank
Match: XP_007210064.1 (carbon catabolite repressor protein 4 homolog 3 [Prunus persica] >ONI09108.1 hypothetical protein PRUPE_5G218400 [Prunus persica])

HSP 1 Score: 86.3 bits (212), Expect = 4.700e-13
Identity = 43/139 (30.94%), Postives = 74/139 (53.24%), Query Frame = 0

Query:  422 YTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYR---------------------------------VPGRGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKRE 528
            Y G +K+RTG D +DG +++W+   F+ +E   +E++                                  P RG+VKL Q++ L+ R + L +R+  A IV+CGDFN+TP SA+Y +++T  L++   +RR + G+R+
Sbjct:  163 YLGSYKRRTG-DTVDGCAIFWKADNFQLLEEHSIEFKGYGLRDNVAQLSVFEMQKAESRRFVIGNIHVLYNPSRGEVKLGQIRFLISRAQILSERWGNAPIVLCGDFNSTPQSAIYKFLSTSELNIMLYDRRELSGQRD 300

[Close]

BLAST of NO08G00550 vs. NCBI_GenBank
Match: XP_008863800.1 (hypothetical protein H310_02156 [Aphanomyces invadans] >ETW07707.1 hypothetical protein H310_02156 [Aphanomyces invadans])

HSP 1 Score: 85.9 bits (211), Expect = 6.100e-13
Identity = 100/386 (25.91%), Postives = 127/386 (32.90%), Query Frame = 0

Query:  422 YTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYRVPG------------------------------------RGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKREGGRGREEGVMPFEEVAWGGGRXXXXXXXXXXXXMRHFGAGTAMGVFRPHAGREGWREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIWPPHGDWSLPSHPPLHHSLSLVSAYAHRPSAHTTGEPAFTSYHGKFKGAVDYIWYNGKEXXXXXXXXXXXRLRCVEFWGMPTVGELRSQVGLPCRACPSDHLPLV 772
            Y G  KKRTGAD  DG S++ +   FE V+  EV++  PG                                    RGDVKLAQLQ+LL  ++ L   +    +++CGDFN TP SALY +++ G LD   ++     G+           +  EE   G G              RH GAGTA   F      +  R                                                                                    P      L       H L+L SAYA  P+  T+GEP  TSYH +F G VDYIWY                + CV    +P V   R    LP R   SDHL LV
Sbjct:  171 YIGKHKKRTGADTHDGCSIFIKEDLFEIVDEIEVDFHKPGHAILDRHNVALVLVLAFKPTKDVVVVATTHILFNPRRGDVKLAQLQLLLSTIQALNTPH----VILCGDFNLTPKSALYEFLSKGALDGTTVSSCDASGQYAHRNSYFHNDVHPEE---GNG------------IERHQGAGTAAYRFGATPSLQLRRR-----------------------------------------------------------------------------------PSRAHECLGIRAV--HELNLASAYAQHPTDATSGEPFATSYHDRFLGTVDYIWY--------------ANMVCVGVMELPPVSFFRGIRALPTRDLGSDHLSLV 438

[Close]

BLAST of NO08G00550 vs. NCBI_GenBank
Match: GBG33378.1 (Glucose-repressible alcohol dehydrogenase transcriptional effector [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 85.9 bits (211), Expect = 6.100e-13
Identity = 75/275 (27.27%), Postives = 110/275 (40.00%), Query Frame = 0

Query:  282 RPWIRP----STRPSPSSSHPLPPSSSSGFTLLSWNVLASSLVDRSFLGFATDEELAWCVRGPRIQAVLRE--MGAEVICLQEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENKLSSTTSASLPSFPTYTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYRV--------------------------------------PGRGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRL 513
            R W +P    + +  P  ++     ++  F L+++NVLA  LVD +       E L W  R PR+   + +  + A++ICLQE D                                             NK    T   + +   Y GL+KKRT A K DG +++++   F  VES  +EY V                                      P RGDVKLAQL  L   ++ L+ R+  A I +CGDFN+TP SA+Y ++ T RL
Sbjct:   20 RTWTKPRGSKAEQQRPQLANGNEGDATHDFCLVNFNVLADDLVDSTHYPGVPQELLEWSYRAPRLLKHITDGKINADIICLQEVD---------------------------------------------NKHFDETFDRVLTGKGYQGLFKKRTNA-KTDGCAIWFKTSTFRMVESLPIEYFVGETDLLDRDNVALALVLEHLHGPKRRKLIVCTTHILFNPRRGDVKLAQLCKLCTELKTLRARHDGAAIALCGDFNSTPKSAVYEFLTTSRL 248

[Close]

BLAST of NO08G00550 vs. NCBI_GenBank
Match: XP_008244021.1 (PREDICTED: carbon catabolite repressor protein 4 homolog 3 [Prunus mume])

HSP 1 Score: 85.5 bits (210), Expect = 7.900e-13
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 0

Query:  422 YTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYR---------------------------------VPGRGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKRE 528
            Y G +K+RTG D +DG +++W+   F+ +E   +E++                                  P RG+VKL Q++ L+ R + L +++  A IV+CGDFN TP SA+Y +++T  L++   +RR + G+R+
Sbjct:  163 YLGSYKRRTG-DTVDGCAIFWKADNFQLLEEHSIEFKGYGLRDNVAQLSVFEMQKAESRRFVIGNIHVLYNPSRGEVKLGQIRFLISRAQILSEKWGNAPIVLCGDFNCTPQSAIYKFLSTSELNIMSYDRRELSGQRD 300

[Close]

BLAST of NO08G00550 vs. NCBI_GenBank
Match: XP_010549137.1 (PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Tarenaya hassleriana])

HSP 1 Score: 85.5 bits (210), Expect = 7.900e-13
Identity = 44/138 (31.88%), Postives = 73/138 (52.90%), Query Frame = 0

Query:  422 YTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYR---------------------------------VPGRGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGKR 527
            Y G +K+RTG D +DG +++W+  +F+ +ESE +E++                                  P RGDVKL Q+++L  R   L +++    +V+ GDFN+TP S +Y ++AT  L+V + NRR + G+R
Sbjct:   45 YAGSYKRRTG-DNVDGCALFWKADRFQLLESENIEFKSFGLHDNVAQLSVFEMCKSKSRKLLVGNTHVLYYPSRGDVKLGQIRLLCSRAHLLSKKWGNIPVVLAGDFNSTPESPVYNFLATSELNVMEHNRRELSGQR 181

[Close]

BLAST of NO08G00550 vs. NCBI_GenBank
Match: CDP04807.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 84.7 bits (208), Expect = 1.400e-12
Identity = 73/305 (23.93%), Postives = 112/305 (36.72%), Query Frame = 0

Query:  282 RPWIRPSTRPSP-----------SSSHPLPPSSSSGFTLLSWNVLASSLV---DRSFLGFATDEELAWCVRGPRIQAVLREMGAEVICLQEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENKLSSTTSASLPSFPTYTGLWKKRTGADKIDGVSVYWQIQKFEFVESEEVEYRV-----------------------------------------------PGRGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPVSALYAWMATGRLDVDQLNRRWVGGK 526
            RPW + S +P P             + P PP     FT+LS+N+LA  L                L W  R   I   LR   A+++C QE D                                            E +L             Y G+WK RTG D++DG +++W+  +F+ V  E +E+                                                 P RG++KL Q+++LL R   + + + +A ++ICGDFN+TP S LY ++A  +LD+ +L R  V G+
Sbjct:  161 RPWQQQSWQPRPRPPKDLEYRNWEHAKPGPPPEWERFTVLSYNILADYLATDHQHKLYFHVPRHMLDWKWRKRSILFELRLWSADILCFQEVD-------------------------------------RFQDLKEELELRG-----------YNGVWKMRTG-DRVDGCAIFWRNSRFKLVHEESIEFSALGLRDNVAQICVFESLSQCNSTTAPAPSKSSKQAKKVVVCNIHVLFNPRRGEIKLGQIRVLLARAHAVSKLWDDASVIICGDFNSTPKSPLYNFVAEQKLDLSELPRDQVSGQ 416

The following BLAST results are available for this feature:

BLAST of NO08G00550 vs. NCBI_GenBank

BLAST of NO08G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008607011.1	9.100e-17	22.88	hypothetical protein SDRG_03166 [Saprolegnia dicli...	[more]
XP_012195419.1	1.000e-15	23.08	hypothetical protein SPRG_01662 [Saprolegnia paras...	[more]
XP_009824634.1	1.200e-13	26.03	hypothetical protein H257_02618 [Aphanomyces astac...	[more]
OQR84962.1	2.100e-13	23.95	hypothetical protein ACHHYP_12517 [Achlya hypogyna...	[more]
XP_007210064.1	4.700e-13	30.94	carbon catabolite repressor protein 4 homolog 3 [P...	[more]
XP_008863800.1	6.100e-13	25.91	hypothetical protein H310_02156 [Aphanomyces invad...	[more]
GBG33378.1	6.100e-13	27.27	Glucose-repressible alcohol dehydrogenase transcri...	[more]
XP_008244021.1	7.900e-13	30.22	PREDICTED: carbon catabolite repressor protein 4 h...	[more]
XP_010549137.1	7.900e-13	31.88	PREDICTED: carbon catabolite repressor protein 4 h...	[more]
CDP04807.1	1.400e-12	23.93	unnamed protein product [Coffea canephora]	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL109	nonsL109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR083	ncniR083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR141	ngnoR141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009010	NSK009010	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO08G00550.1	NO08G00550.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581950	gene_3383	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO08G00550.1	NO08G00550.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO08G00550 ID=NO08G00550|Name=NO08G00550|organism=Nannochloropsis oceanica|type=gene|length=2619bp
ATGTTCCACGGGGGCGGAGGGCAGCGGCTCCTTTCAGTCCTTGCATTCAT
ACGCAACACCCGTCGACCTCCCCCCTCTACGTCTTGGGCCCCTACAAGTA
GCAGTAGCAGTAGCAACACCAATATCAACATCGTCTACAGCACCAGCACC
TGTACCGCCAGTAGCAATATCGCTACACCACAGCAATCTACTCAACTTTT
CCGACTCGACCACTACATCATGGAGGACATGCATGTGGCAGGAGAAGCCT
CGCAACCTCCCCATCCTCCTCCTTCTCATCGCCAGCATCAGTGCCAGCAG
CACCAGCGCAAGAAATTCCGAGGCCCAGAGCACGGACAAGAATCTTCCGA
TAAGTCTCAGCCCAATGGACATGGCAGGCGCGGCTGCATAGGATCAGGAG
GAGGAAGAGGAGGACGAGGAGGAGCAGGGGAGCAGGGGCGGGGAAGGGGA
GGAGGCTTCGCCTGTCTAGGCGGCGGCGGCCGTGAACGACCACATATAGA
AGCAGGGCAATATCATTTCTCCAATCCGCAACATCACCAGTGGCAGACGC
ATCACACACAAGTGCGCGAACACCAACACCATCACCACCAACAGCATCAG
CAGCAGCAGTCTAAGGACTTGCACGCATACTACCGTTTTGCCCAGCACTA
TTCCGCCCACCTCCGAGCTGGAACAAGGGATGCAGTCGTCAGTAGGAGAG
GAAAAGGAAGAGGATGGTGGGAAGGAGGTCCAGGTGGTGGAGGAGGAGTT
TCATCGCTACACACACCCAGCGGAAGAAGCAGCAGCAGCAGCGGCAGCCA
TCACCCTGCGTACCCTCCCCGGAACGGCCTTCCCTCGTTCCACCGCCCCT
GGATCAGGCCCAGCACCCGCCCTTCCCCTTCTTCCTCTCATCCCTTGCCC
CCTTCTTCGAGCTCGGGCTTTACTCTGCTTTCGTGGAATGTGCTGGCCTC
CAGTCTAGTGGATCGGTCTTTCTTGGGGTTCGCCACGGACGAGGAGCTGG
CGTGGTGCGTCAGAGGACCCCGTATTCAGGCCGTGTTGAGAGAGATGGGA
GCCGAGGTGATTTGTTTACAGGAGGATGATGACCACGAGCACTTCCTCCA
GGCCTTGGGTGGTGGCGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGCTGTTGCTGCTACTGCTGCTACTGCTGCAGCGGCCACTCCCGGT
GATGGAAAAGAAGAAAATAAACTCTCTTCGACCACCTCCGCCTCCCTCCC
TTCCTTTCCTACCTACACGGGGCTTTGGAAAAAACGCACCGGGGCGGATA
AAATCGACGGGGTATCCGTTTATTGGCAGATTCAAAAATTTGAATTTGTG
GAAAGTGAGGAGGTGGAGTACCGTGTCCCGGGgtgtgggcacttagatag
agataacgtcgcactgctggtggtgttgcaagagagggaaggaggcaaag
gagggaaggaaaggaaaggaggggggaggaggaagaggggacagggcggg
ggagagggaggacgttgatcgtggcaaacacccacctattgttcaacccc
agGAGAGGAGATGTCAAGTTGGCCCAGCTGCAGATGCTGCTAGGGAGGAT
GGAGCGGTTGCAGCAGCGATACCCGGAGGCAGGGATAGgtaagtcagtct
gagtgttgccgccgaggagtgaagtacactatcatccccctcccctcccc
ccctccttcctgacccttttcaccagttctccctccctccctccatccct
cagTGATATGTGGTGATTTTAATGCCACACCTGTCAGCGCCTTGTACGCG
TGGATGGCCACGGGGAGGCTGGACGTTGACCAACTAAATAGGCGATGGGT
GGGAGGAAAGAGGGAAGGAGGGAGAGGGAGGGAGGAGGGGGTGATGCCAT
TTGAGGAGGTGGCTTGGGGAGGAGGAAGAGGGGGAGGGAGGGACGGAAGG
AGGGAGGAGAGAAGGATGAGACATTTTGGGGCGGGGACGGCGATGGGTGT
CTTTAGGCCTCATGCGGGGAGGGAGGGGTGGAGGGAGCGCAGGAGGGAGG
GAGGGAAGAAGCAGCAGCCGGAGGATGCGAACGCCATGGTGGTAGAGGAG
GAAGAGGAGGAGGTGGAGAAGGAGGTGATGGTGGAGGGAGTAGTACCCAT
CACCACAACCATCAGTAACAGCAGCAGCAGCAGCAACAGCACCTCCACCA
CCAGCAGCAACAATAACAACAACAACAGCAGCAGCAGTAGCAGCAGTCCC
TCTGCTCCTTCACTTTCCCACCCACCGCCGATCTGGCCCCCGCACGGCGA
CTGGAGCCTCCCCTCCCACCCCCCCCTACATCACTCCCTCTCTCTCGTCA
GCGCCTATGCTCATCGGCCCTCCGCGCACACCACGGGCGAGCCCGCCTTC
ACCAGCTACCATGGAAAATTTAAGGGAGCGGTGGATTACATCTGGTACAA
TGGAAAGGAAGGCGGGACGGAGGGAGGGACCCAAGGAGGGAGTAGGTTGA
GGTGTGTGGAGTTTTGGGGCATGCCCACAGTGGGTGAGTTGAGGAGTCAG
GTGGGCCTGCCGTGTCGCGCATGTCCTAGCGACCATCTCCCCTTGGTGGT
GAAGATGGAGTGGATGTGA

protein sequence of NO08G00550.1

>NO08G00550.1-protein ID=NO08G00550.1-protein|Name=NO08G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=778bp
MFHGGGGQRLLSVLAFIRNTRRPPPSTSWAPTSSSSSSNTNINIVYSTST
CTASSNIATPQQSTQLFRLDHYIMEDMHVAGEASQPPHPPPSHRQHQCQQ
HQRKKFRGPEHGQESSDKSQPNGHGRRGCIGSGGGRGGRGGAGEQGRGRG
GGFACLGGGGRERPHIEAGQYHFSNPQHHQWQTHHTQVREHQHHHHQQHQ
QQQSKDLHAYYRFAQHYSAHLRAGTRDAVVSRRGKGRGWWEGGPGGGGGV
SSLHTPSGRSSSSSGSHHPAYPPRNGLPSFHRPWIRPSTRPSPSSSHPLP
PSSSSGFTLLSWNVLASSLVDRSFLGFATDEELAWCVRGPRIQAVLREMG
AEVICLQEDDDHEHFLQALGGGAGAGAGAGAGAGAAVAATAATAAAATPG
DGKEENKLSSTTSASLPSFPTYTGLWKKRTGADKIDGVSVYWQIQKFEFV
ESEEVEYRVPGRGDVKLAQLQMLLGRMERLQQRYPEAGIVICGDFNATPV
SALYAWMATGRLDVDQLNRRWVGGKREGGRGREEGVMPFEEVAWGGGRGG
GRDGRREERRMRHFGAGTAMGVFRPHAGREGWRERRREGGKKQQPEDANA
MVVEEEEEEVEKEVMVEGVVPITTTISNSSSSSNSTSTTSSNNNNNNSSS
SSSSPSAPSLSHPPPIWPPHGDWSLPSHPPLHHSLSLVSAYAHRPSAHTT
GEPAFTSYHGKFKGAVDYIWYNGKEGGTEGGTQGGSRLRCVEFWGMPTVG
ELRSQVGLPCRACPSDHLPLVVKMEWM*

Synonyms

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