NO08G00490, NO08G00490 (gene) Nannochloropsis oceanica

Overview
NameNO08G00490
Unique NameNO08G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1879
Alignment locationchr8:188963..190841 +

Link to JBrowse

Properties
Property NameValue
DescriptionInhibitor of growth protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:188963..190841 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024610ING_N
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006325chromatin organization
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
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BLAST of NO08G00490 vs. NCBI_GenBank
Match: EWM26523.1 (inhibitor of growth ing4 [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 5.200e-28
Identity = 149/256 (58.20%), Postives = 160/256 (62.50%), Query Frame = 0 
Query:   41 MIGPGYLEDNLEHGAPLPDRVKETFHLLRELDVATRLLTTRADRLIGATDGIPQ---------------------------------------------------------------------------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATLRQFQHAALRCADEKIQLAIHVYDLLDTQIRHIDSDLRRFERHYGYVP 222
            MIGPGYL+DNLEHGAPLP+R+KETFHLLRELDVATRLLTTRADRLIGA+DG+P+                                                                           +            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      A+LR+ QHAALRCADEKI LAIH YDLLDTQIRH+DSD+RRFERHYGYVP
Sbjct:    1 MIGPGYLKDNLEHGAPLPERLKETFHLLRELDVATRLLTTRADRLIGASDGLPEENGVHEEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVAAWKEEERRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGTCLASLRELQHAALRCADEKIALAIHAYDLLDTQIRHLDSDIRRFERHYGYVP 256
The following BLAST results are available for this feature:
BLAST of NO08G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26523.15.200e-2858.20inhibitor of growth ing4 [Nannochloropsis gaditana... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009019NSK009019Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00490.1NO08G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669367gene_3376Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100141g13gene3993Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00490.1NO08G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00490 ID=NO08G00490|Name=NO08G00490|organism=Nannochloropsis oceanica|type=gene|length=1879bp
CTCATCTCCACGCAATTGTGATAAAACGTGAGGCTTTTGCGCGCCTCAAC
GGTCATGCCCCACTCACTCTCTTTTGCCCCAGCCTATCCCACCCATCAGA
AGCACGCCCACCGCACAGACAGAGTCAGTGCCTCCTCACGTCCACGAGAA
AACAGGCAAATCCCCACGCAGATCTGGCCTGACTCATTTGAGTGCCGTTT
CGCTAACTGGCCTCATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCT
TTAAAAATCCTTCCCGCCAAATCCCACACCCTACCCACCCATCAATCACA
GGCAGGGTCACAGGAGGAGGACGACGACGGTGGAATGATTGGACCAGGGT
ACCTCGAGGATAATCTGGAGCACGGGGCTCCTTTGCCAGATAGgtacgtt
tcaggggattgattttgtcaagcgtgcctgcaaaagcgagctgctcacct
actcaggtcactcatgccctcgcgcatggggtgttttcttttgcgcgtgc
gatgtttcgattaatatgcatatagatggttatctgcttctcgttcgtgt
cttatctgcaaaagacaccgaggatatggggatttgatccccattccatg
ccttttcccttccgtagtctggttgagataccaacccttccctctcctga
ttgcacacattacgtacatacacgccctcgcacattgacaacgcatcact
agacttcgccgctaccttagatccttccgcccctctacctactcctcctc
acccatgataccttccccccctctccctctccccaaaaatagAGTAAAAG
AGACGTTCCACCTTCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACC
ACGAGGGCCGACCGTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGA
CGACGATGAGGAAGAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAA
GAGGAGGAGGGAAGAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAG
GCCGCGCCAGGCGGCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATC
AGCATCATCATTAGACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAAGAGGACGATGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCAC
GCGGCCTTGCGGTGCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTA
TGATCTGTTAGACACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGT
TTGAGAGGCATTACGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGG
AAGGCCGCGGAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGAT
GAGTAGAAATTACCAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGA
GGGGGATAAAGAGGGGAAGGGGGAGGTGGCCGGATGCGGAGGGAGGAGGA
GGAGGAGGAGTAGGAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGG
GGGAGGGATGTGGGGCGTGGGGGGGGAGGAAATGGTGTATTGGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTG
GGAGTGGGGGAGGGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGC
AATATTGCCTATGGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGTA
CGAGTGGTTTCACTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCGG
GAAATCGGTGGCTGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGGA
GGGGGGGAGGGGTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCGG
TTGGAGGAGAAGAAGGGGTTGAGGGAGGG
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protein sequence of NO08G00490.1

>NO08G00490.1-protein ID=NO08G00490.1-protein|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MPMACITSALPPLKILPAKSHTLPTHQSQAGSQEEDDDGGMIGPGYLEDN
LEHGAPLPDRVKETFHLLRELDVATRLLTTRADRLIGATDGIPQRDDDEE
EDEEEEAGKKRGRGGGKKENSVGGKGGKKAAPGGSSSRGKGKGRASASSL
DSEDEEEEEEEEEEEDDASRRATLRQFQHAALRCADEKIQLAIHVYDLLD
TQIRHIDSDLRRFERHYGYVPPAVEEAARKAAEQEKQQQQQQRQLMSRNY
QYMQKAEGGGGGRGIKRGRGRWPDAEGGGGGGVGGSSRLTYSRGGGGGMW
GVGGEEMVYWEEEEEEEGEEGTGRGWWGVGVGEGWTRTSRSTVTVAILPM
GR*
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Synonyms
Publications