NO08G00450, NO08G00450 (gene) Nannochloropsis oceanica

Overview
NameNO08G00450
Unique NameNO08G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr8:181026..181907 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:181026..181907 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G00450 vs. NCBI_GenBank
Match: EWM26535.1 (hypothetical protein Naga_100141g9 [Nannochloropsis gaditana])

HSP 1 Score: 146.7 bits (369), Expect = 1.100e-31
Identity = 105/271 (38.75%), Postives = 132/271 (48.71%), Query Frame = 0 
Query:    1 MGARHSQHRYSHPTNTTFEQDAVIGGAGGAVLGLMSGMGYFFVNQIGLRGSITLMGFAVVSGTIVGAIVCVAGAVAIRSLAWLYRQLRKRTRHGMDIQLSVMTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEARMERARALEDLHRYDEMLAHAEQRLRLA--AGRGTA---AVGEVSAGERGQKGEVQEPQPRVIPPPDNFPSIQPVHITLRLRDTTEGGSDSNTEEDMDTEFYLVEYED 267
            MG R S H Y HPTNTT EQDA IGG GG+V G +SG+GY FVNQ+GLR SITL+GFAVV G IVGAIVC+AG +A++SLAWLY +LRKR R  + +QL+  T                                                        L+ ++ ER R LEDL  YD  L   EQ+L  A  + RG A    V    +    Q+G     +   +P        QPVHIT RL DT      SN +  + +E  +V  E+
Sbjct:    1 MGPRQSTHIYRHPTNTTLEQDATIGGVGGSVAGAISGIGYLFVNQVGLRSSITLLGFAVVGGAIVGAIVCIAGTLAVKSLAWLYSRLRKRARQNLAVQLAPFTT---------------EAAASEVHNRRANSREETQPTCKKSGATLTSRELSRLEQVLETSQAERGRLLEDLRTYDSALTQLEQQLSFARESSRGNANDQYVRSHCSDTVSQRGPSHAAE--TLPLELEHFQAQPVHITFRLSDTVSECMISN-DNGISSEACIVSNEE 253
The following BLAST results are available for this feature:
BLAST of NO08G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26535.11.100e-3138.75hypothetical protein Naga_100141g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00450.1NO08G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100141g9gene3997Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00450.1NO08G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00450 ID=NO08G00450|Name=NO08G00450|organism=Nannochloropsis oceanica|type=gene|length=882bp
ATGGGAGCCAGGCATAGCCAGCACCGGTACAGCCATCCCACCAACACCAC
CTTCGAGCAAGATGCGGTCATTGGGGGGGCAGGCGGAGCAGTCCTCGGAC
TCATGTCTGGGATGGGATATTTCTTTGTGAATCAGATTGGGCTCCGCGGG
AGTATTACTTTGATGGGTTTCGCAGTGGTGAGTGGGACGATCGTTGGGGC
CATCGTATGCGTTGCCGGTGCCGTTGCGATCAGATCCCTCGCCTGGCTGT
ACCGGCAGCTTCGCAAGCGGACACGGCACGGCATGGATATCCAACTTTCT
GTTATGACAGCTGCTACTGCCGCGGAAGGGCAGGGTGGTGGAGGACGGAG
TGGAGGATGCGTGCGCAAAGACAATGGTAGCACCACCACCAATGCAAGCC
CTACAACCGCCTCGATGCCGACAACGACGACGACGACGAGCTTGACGGAA
GAGGCGTTGGCAATGCAGCAAGCCGCATTGGACGAGGCGCGAATGGAGCG
GGCACGGGCTTTAGAAGACTTGCACCGCTACGATGAAATGTTGGCCCATG
CTGAGCAGCGCTTGCGCTTGGCTGCAGGAAGAGGGACTGCAGCTGTAGGA
GAAGTATCGGCAGGAGAACGTGGGCAAAAGGGAGAGGTGCAAGAGCCGCA
GCCACGTGTAATCCCACCGCCTGATAATTTCCCGTCGATTCAGCCCGTGC
ACATCACATTGCGGCTGCGCGACACGACGGAGGGGGGCAGTGATAGCAAC
ACGGAGGAGGATATGGACACCGAGTTTTACCTGGTAGAGTATGAGGATGA
GGAGTTAGGCGAGGGACTTCGGGCAACAATGTCAAGGGGGAATGAAGGAC
AACGGGATAGCAGGACGCCACCCATTTATTAG
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protein sequence of NO08G00450.1

>NO08G00450.1-protein ID=NO08G00450.1-protein|Name=NO08G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MGARHSQHRYSHPTNTTFEQDAVIGGAGGAVLGLMSGMGYFFVNQIGLRG
SITLMGFAVVSGTIVGAIVCVAGAVAIRSLAWLYRQLRKRTRHGMDIQLS
VMTAATAAEGQGGGGRSGGCVRKDNGSTTTNASPTTASMPTTTTTTSLTE
EALAMQQAALDEARMERARALEDLHRYDEMLAHAEQRLRLAAGRGTAAVG
EVSAGERGQKGEVQEPQPRVIPPPDNFPSIQPVHITLRLRDTTEGGSDSN
TEEDMDTEFYLVEYEDEELGEGLRATMSRGNEGQRDSRTPPIY*
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Synonyms
Publications