NO08G00350, NO08G00350 (gene) Nannochloropsis oceanica

Overview
NameNO08G00350
Unique NameNO08G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length7140
Alignment locationchr8:135530..142669 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:135530..142669 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
BLAST of NO08G00350 vs. NCBI_GenBank
Match: EWM26537.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 171.0 bits (432), Expect = 3.800e-38
Identity = 166/420 (39.52%), Postives = 209/420 (49.76%), Query Frame = 0
Query: 1449 QQISRPAWQTLLRVAKAQVQEEREG-------------EKGG----GSGRQLTKNGRENLLWVLGAMFDAGIPPSNGDVDWVVQTLATAREWDALHKVLEKVAMAASFSRGG-----VGDEGNGSRGRGS-----------LDVIGCNRLLHALAREGEGKRALDFLSFMEDRLGVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTKEGWEGGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK--------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRPDVVSYTNVIRAFEGGGSENAHVERAKAVRDLLKRVKAWGVRPDIMLWNSALRVSVKLGQWQLTQEILKEMDRDSIVPDEWTVRAVTSGGRVEGSAGRERGQTLALLRTMQDRNKD 1828
            + +S  AWQ L + AK   +E   G             E G       G++ +  G E LLWVL AM +AG+ PS GD++W +Q LA+ + WDAL  +LEK A A   + GG     VG++G G    GS           LDVIGCNRLLHA+A+ GEG+R++ FL FM DR+GV P                               ++  E       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +                                             +  PD +SYTNVIRA   GG     V   K V  +L+R KA  +RPD  L+NSAL+V V  G W+L +E+LK+MD+  ++PDE+TVR +T G           GQTLALLR MQDR  D
Sbjct:  128 RHLSWSAWQELAKAAKVLAKERESGGKRXXXXXRKAVSESGNDVREAGGKESSDQGGE-LLWVLKAMLEAGVAPSRGDLEWSLQMLASQKAWDALEDLLEKAA-AVHVAGGGKDESVVGEDGRGEDMGGSGRSQDPIKSTCLDVIGCNRLLHAMAQNGEGERSVTFLKFMRDRIGVVPDMISYTSAMDACGRGGDWRGALNLLETIEREKNRGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEPECLRPDTIACNVALEACAQGLQPNAALRLLKKMEEGWDGVQGMSPAPDQISYTNVIRALRRGGGNGEDV--VKTVHQILQRAKARKLRPDNRLYNSALKVYVHEGHWRLAKELLKDMDQRQMIPDEFTVRILTRGXXXXXXXXXXXGQTLALLRDMQDRLGD 543          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: CBN74228.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.8 bits (190), Expect = 4.300e-10
Identity = 76/294 (25.85%), Postives = 118/294 (40.14%), Query Frame = 0
Query:  696 LRVRPDLMAYNATMKALSELGKHEEALSLLDEMVEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCAR----GARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLL 986
            + VRPD   +   + A +E G    A  LL+EM    G+  DE +F     A G+AG WR+ +        ++++ AA                      +  +   + + + AC +  +  E L L +           G R            PV+   + +L    G       ++     RG    V  YT A+ A  R+G+  E L +   + ED  +  ++  +   L  CA+    G R     A  A  +L GM   G+R GV G+  + QA GLAGRWEDA+ LL
Sbjct:  729 VEVRPDRATFRLGLTAAAEAGDGPAAAVLLEEM-RDAGIAMDESAFHLAATAFGRAGLWRQGV--------RVAVVAAEQG-------------------IALAPTTLTSILGACAKQARWREALGLLQ-----------GTR------------PVLQQGLSSLPLSTG-----AGVVAGNERRGEGNVVAAYTLAMVACRRSGRHSEGLRVLEMLEEDGGVG-DEAFFRVALKCCAKAGGVGERGDCSGAAVADRVLEGMSAQGIRCGVEGFTDIAQAYGLAGRWEDALALL 965          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_018438850.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g11900-like [Raphanus sativus])

HSP 1 Score: 73.9 bits (180), Expect = 6.300e-9
Identity = 43/138 (31.16%), Postives = 78/138 (56.52%), Query Frame = 0
Query:  852 VIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990
            VI+ T++  A  +  + + + +L++++     PDV+TY + +  LGRAG   E L L ++M+E+  + LN ++Y+TVL+   R  R    C V    L + M   G+ P +L Y +V+ + G +G  ++A+ L  EM+
Sbjct:  181 VINRTILAFA-ESRQVDKVVKILDKMKEWECKPDVITYNSVLDVLGRAGLVNEMLKLLSSMKEESDVSLNIITYNTVLNGTRRACR-FDMCLV----LYQEMVGCGIEPDLLSYTAVIDSLGRSGNTKEALRLFDEMK 312          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_010667236.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Beta vulgaris subsp. vulgaris] >KMS95510.1 hypothetical protein BVRB_007510 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 73.6 bits (179), Expect = 8.200e-9
Identity = 76/295 (25.76%), Postives = 128/295 (43.39%), Query Frame = 0
Query:  700 PDLMAYNATMKALSELGKHEEALSLLDEM--VEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSP--VIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990
            PD   Y   MK   + G+  + + +L+ M   E     PD +S++T+I A  KAG   +A  +L  M A++ + A                          + +     +    +  Q+D+  +L  EM     T  AG             SP  V ++T+I       D   ALA   E+RARG  P  ++YTT +KA   +GQ K A  +F  M  DP ++++ V+++ +++  C  G   + E A   VE +R   + G  P V  Y S+     LA +  +A+++  E++
Sbjct:  377 PDSRIYTTLMKGYMKTGRVSDTVRMLEAMRRQEDSASHPDHVSYTTVISALVKAGSMDKARIVLAEM-ARIGVCA--------------------------NLVTYNILLKGYCQQLQVDKAKELVREM-----TGVAG------------ISPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLNDPRVKVDQVAWNMLVEGYCKMG---LIEEAKNVVERMR---EHGFHPNVSTYGSLANGIALARKPGEALLIWNEVK 621          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: KCW49707.1 (hypothetical protein EUGRSUZ_K03209 [Eucalyptus grandis])

HSP 1 Score: 72.4 bits (176), Expect = 1.800e-8
Identity = 69/293 (23.55%), Postives = 127/293 (43.34%), Query Frame = 0
Query:  700 PDLMAYNATMKALSELGKHEEALSLLDEM--VEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990
            P+   Y   MK    +G+ ++ + LL+ M   E     PD +S++T+I A  KAG   +A  +L  M+ ++S+ A R                          +     +    +  Q+D+  +L +EM+                        V ++T+I       D   AL    E+RARG  P  ++YTT +KA   +GQ K A  +F  M +DP ++ +  +++ +++  C  G          A ++++ M+++GL P V  Y S+     LA +  +A++L  E++
Sbjct:  290 PNSRIYTTLMKGYMRMGRVKDTVRLLEAMRHEEDSSRHPDHISYTTVISALVKAGSMDQARRVLAEMK-RISVPANR--------------------------ITYNILLKGYCQQLQMDKAKELIKEMVSDAQVQP---------------DVVSYNTLIDGCIIIDDSSGALEFFNEMRARGIAPTKISYTTLMKAFASSGQPKLAHKVFDEMIQDPRVKPDVAAWNMLVEGYCKLG------LVEEAKKVVQRMKENGLYPDVATYGSLANGIALARKPGEALLLWNEIK 534          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_010037928.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 72.4 bits (176), Expect = 1.800e-8
Identity = 69/293 (23.55%), Postives = 127/293 (43.34%), Query Frame = 0
Query:  700 PDLMAYNATMKALSELGKHEEALSLLDEM--VEKRGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREME 990
            P+   Y   MK    +G+ ++ + LL+ M   E     PD +S++T+I A  KAG   +A  +L  M+ ++S+ A R                          +     +    +  Q+D+  +L +EM+                        V ++T+I       D   AL    E+RARG  P  ++YTT +KA   +GQ K A  +F  M +DP ++ +  +++ +++  C  G          A ++++ M+++GL P V  Y S+     LA +  +A++L  E++
Sbjct:  406 PNSRIYTTLMKGYMRMGRVKDTVRLLEAMRHEEDSSRHPDHISYTTVISALVKAGSMDQARRVLAEMK-RISVPANR--------------------------ITYNILLKGYCQQLQMDKAKELIKEMVSDAQVQP---------------DVVSYNTLIDGCIIIDDSSGALEFFNEMRARGIAPTKISYTTLMKAFASSGQPKLAHKVFDEMIQDPRVKPDVAAWNMLVEGYCKLG------LVEEAKKVVQRMKENGLYPDVATYGSLANGIALARKPGEALLLWNEIK 650          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: PIN18480.1 (hypothetical protein CDL12_08852 [Handroanthus impetiginosus])

HSP 1 Score: 72.4 bits (176), Expect = 1.800e-8
Identity = 83/353 (23.51%), Postives = 146/353 (41.36%), Query Frame = 0
Query:  651 DEDEDGGEEEDSRLTRTCNRAVTCAVRERKWEAAVSLHKGMQQTGLRVRPDLMAYNATMKALSELGKHEEALSLLDEMVEKR--GLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREMEGEGGREGEGDE 1001
            D+DE+ G E D                E+    +V       +    V PD   Y   MK   + G+  + + +L+ M  ++     PD +S++T+I A  KAG   RA  ++  M A++ + A                          + +     +    +  Q+D+   L  EM+     + AG               V ++T+I       D   AL    E+R RG  P  V+YTT +KA   +GQ K A  +F  M +DP ++++ V+++ +++  C  G          A  +++ M+ +G+ P V  Y S+     LA +  +A++L  E++   G E EG+E
Sbjct:  335 DDDEETGNESDE--------------FEKLLPNSVDFSSEPPELPHAVAPDSRIYTTLMKGYMKAGRVADTVRMLEAMRHQKDSSSHPDHVSYTTVISAFVKAGLMDRARQVVTEM-ARIQVPA--------------------------NLITYNILLKGYCQQLQIDKAEDLIREMV-----DEAGIEP----------DVVSYNTLIDGCILVDDSAGALTYFNEMRKRGIAPTKVSYTTLMKAFASSGQPKLANKVFDEMLKDPRVKVDLVAWNMLVEGYCKLG------LVDEAKSIIQKMKDNGVHPNVATYGSLANGIALARKPGEALLLWNEIKERCGIENEGEE 625          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_024522956.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Selaginella moellendorffii] >EFJ05378.1 hypothetical protein SELMODRAFT_187482 [Selaginella moellendorffii])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-8
Identity = 84/358 (23.46%), Postives = 137/358 (38.27%), Query Frame = 0
Query:  648 REVDEDEDGGEEEDSRLTRTCNRAVTCAVRERKWEAAVSLHKGMQQTGLRVRPDL-----MAYNATMKALSELGKHEEALSLLDEMVEKRGLVPDEMSFS-----TMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAH-----PDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCARGARAIPECAVTAVELLRGMQQDG--LRPGVLGYRSVLQACGLAGRWEDAMMLLREM 989
            +E+ E  D  +E+     +T N  +   V          +H+ MQ     V+PD      + Y   +K L + G  + A  +L+ M    G  P +   S     T+I+AC  AG+ RRA G L    + +                            G S +     +    RS    E LK+ EEM L                     + +  ++++    R  D+  AL +LEE++  G +     PDVVTYTT +K L  AG     L +   M+      ++ V Y  ++D C       P  A+T  + +  + ++   LRP V  + S+++A    G  E   +L   M
Sbjct:  156 KEIFEILDCAKEKKLVNRKTMNAVMEACVH------CGDIHRTMQLFQYMVQPDACGVDEITYGTLIKGLGKAGLLDAAFQILESM--DLGTAPGKPKLSLIHLNTLINACANAGDARRARGALKRYHSVIKDE-------------------------GPSLVTYNMLIKGYARSENPLEALKVREEMQLR----------------GMQLNKLSWNSLVMACVRGQDMDAALEILEEMKEAGKYSVDLAPDVVTYTTLIKGLADAGNLDGVLKMVAEMKASTSCVIDRVGYTAIIDACITAGS--PTDALTFFQEMECLAKEDRRLRPRVHAFLSMMRAFSEIGDVEKVSLLKSRM 462          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: OVA18174.1 (Pentatricopeptide repeat [Macleaya cordata])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-8
Identity = 70/303 (23.10%), Postives = 126/303 (41.58%), Query Frame = 0
Query:  699 RPDLMAYNATMKALSELGKHEEALSLLDEMVEK--RGLVPDEMSFSTMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLD-VCARGARAIPECAVTAVELLRGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREMEGEGGREGEG 999
            +PD   Y   MK   + G+  + + +L+ M  +      PD ++++T+I A  K G   RA  +L  M A++ + A R                          +     +    +  Q+D+  +L  EM  +                      V ++ +I       D   AL    E+RARG  P  V+YTT +KA   +GQ K    +F  M +DP ++++ V+++ +++  C  G          A +++  M++DG  P V  Y S+     +A +  +A++L  E++G    E EG
Sbjct:  362 KPDSRIYTTLMKGYMKEGRIGDVVRMLEAMRHQSDSSSHPDHVTYTTVISALVKVGSMERARQVLAEM-ARVGVPANR--------------------------ITYNVLLKGYCQQLQIDKAKELIREMASNAGVEP---------------DVVSYNILIDGFILIDDSAGALEYFNEMRARGIAPTKVSYTTLMKAFASSGQPKLVHKVFDEMLKDPRVKVDQVAWNMLVEGYCKLG------LVEEAKKIVERMREDGFYPDVATYGSLANGIAVARKPGEALLLWNEVKGRCREEKEG 616          
BLAST of NO08G00350 vs. NCBI_GenBank
Match: XP_024532861.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-8
Identity = 84/358 (23.46%), Postives = 137/358 (38.27%), Query Frame = 0
Query:  648 REVDEDEDGGEEEDSRLTRTCNRAVTCAVRERKWEAAVSLHKGMQQTGLRVRPDL-----MAYNATMKALSELGKHEEALSLLDEMVEKRGLVPDEMSFS-----TMIHACGKAGEWRRALGLLHAMEAKLSINAARGXXXXXXXXXXXXXXXXGVWVVGGSDMAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGRXXXXXXXXYVCSPVIHSTMITLACRAGDLPRALALLEELRARGAH-----PDVVTYTTAVKALGRAGQAKEALSLFTAMREDPHLELNDVSYHTVLDVCARGARAIPECAVTAVELLRGMQQDG--LRPGVLGYRSVLQACGLAGRWEDAMMLLREM 989
            +E+ E  D  +E+     +T N  +   V          +H+ MQ     V+PD      + Y   +K L + G  + A  +L+ M    G  P +   S     T+I+AC  AG+ RRA G L    + +                            G S +     +    RS    E LK+ EEM L                     + +  ++++    R  D+  AL +LEE++  G +     PDVVTYTT +K L  AG     L +   M+      ++ V Y  ++D C       P  A+T  + +  + ++   LRP V  + S+++A    G  E   +L   M
Sbjct:  156 KEIFEILDCAKEKKLVNRKTMNAVMEACVH------CGDIHRTMQLFQYMVQPDACGVDEITYGTLIKGLGKAGLLDAAFQILESM--DLGTAPGKPKLSLIHLNTLINACANAGDARRARGALKRYHSVIKDE-------------------------GPSLVTYNMLIKGYARSENPLEALKVREEMQLR----------------GMQLNKLSWNSLVMACVRGQDMDAALEILEEMKEAGKYSVDLAPDVVTYTTLIKGLADAGNLDGVLKMVAEMKASTSCVIDRVGYTAIIDACITAGS--PTDALTFFQEMECLAKEDRRLRPRVHAFLSMMRAFSEIGDVEKVSLLKSRM 462          
The following BLAST results are available for this feature:
BLAST of NO08G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26537.13.800e-3839.52Pentatricopeptide repeat containing protein [Nanno... [more]
CBN74228.14.300e-1025.85conserved unknown protein [Ectocarpus siliculosus][more]
XP_018438850.16.300e-931.16PREDICTED: pentatricopeptide repeat-containing pro... [more]
XP_010667236.18.200e-925.76PREDICTED: pentatricopeptide repeat-containing pro... [more]
KCW49707.11.800e-823.55hypothetical protein EUGRSUZ_K03209 [Eucalyptus gr... [more]
XP_010037928.11.800e-823.55PREDICTED: pentatricopeptide repeat-containing pro... [more]
PIN18480.11.800e-823.51hypothetical protein CDL12_08852 [Handroanthus imp... [more]
XP_024522956.12.400e-823.46pentatricopeptide repeat-containing protein At5g10... [more]
OVA18174.12.400e-823.10Pentatricopeptide repeat [Macleaya cordata][more]
XP_024532861.12.400e-823.46pentatricopeptide repeat-containing protein At5g10... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009027NSK009027Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00350.1NO08G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552699gene_3358Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100141g3gene4001Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00350.1NO08G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00350 ID=NO08G00350|Name=NO08G00350|organism=Nannochloropsis oceanica|type=gene|length=7140bp
GGGTGACTGACTGCATGGGAGACAAGGAAGGACTGGAATAGAGACGCGAT
AGCGCTAGACTGTCGCCAGATAACGCCGGTCTTTCTAAGCATGTTTCCAT
ATCATTGTCATCGTAGTATCACACACTGAAGAAGGAAAACAACGCAATGC
CCCAATTCTAATAAATAATCCTGCGGTTTGGGGGTTGGGGAGGTCGATGG
CTGAAGAACTTAAATGAAATGCATACATTTACTGTGACTATCCGCAATCA
CCACCATTAAGGTTACCGCCGGCTCCTCCTCGTCCTCCTCCTCCTCCTTG
CTGTACTCCTTCGAGATGTCGAGGTGCACACTCATACATATATTAAAGCC
TCTGTCACTCATGCTCCTCGAAGAAAGCCACAAAAGTACGGCATGGCGGT
CGCCCCATCCGCGCCAGAATGTCCTTTCCCACATCAATCCCACATCGTCT
TACACAGGTCGGCAGGATGTTGCGTGGTATACAGCAGCACCGTCGTCACC
ACATGGTGCTGCGGCAGGCCGCAACGATAAGGGGAGCAGGTCAGACCCAC
CCACTACAAAATCCTCCCCACAGCTGCTCTCTTTGGACTCAATCCACAAT
CAGCCTGGGGCTCCGCCGCCTCAACCCTGAAGCACATGCCGACCTGCAGC
GCCTTCTGCAGCATGGCCAGCTCGAAAATGCTATGGCTTTTCTCTCGTCG
TTGCGAGGGCAGGGGCTATACCCAGCACCCGGTCTTGTCGATCATTTCAC
GCGGCTATGCGTCAACTCGCGGCGGCGGGAGGTGGCCTGGGGCATGCTAC
GACAGGAGGGCATCCCTGCACATGTAGCAACGTACAAAACTTTGCTCGAA
TCGTACGCGCGGTCATTGCCGCCATCACAGGATAAGATTACAGGGTCACC
GCAGTCGCAGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAGCAGTTAC
CGCAAGCATTTCGTCTGTTGGAGGAAATGAAGACTCTCCATCACGTTCGT
CCCGACGCCGCCTGCTACCTGGTCGTCCTACAAGGGTGTGCCGAGGCAGG
GGAGTGGCAAGAGGCCATGCGGCTACGGAAAGAGTTGCTGTCATCACTAG
CGACTCCTTCAGAAATGGAAGTGACAGAGGAAGCAGCAACGATGGCCAGA
AAAAAGAGCCTTGCCTTACTACTACAGGCCCTCGCTCGAGACGGACAGCT
GGCGAAAGCCCTTAATCTACTTCAAGATCACGCAGAGATCGGTAATGCAG
ACATGAATGCAGTAGCTGCGTTGTTGGAAGGAGGCATGGCAAGGGAAGGA
GGGATGGAGGAAGCTCTGGGTGTCATCACGTCCCTCCGCAACACGCCCTG
GTGGCTCCGACAGAAGCAAGATCTTCAGCAACAGCACCAGGAGCAAGACC
GGCAGCAGCAGATCCGAGGGAAAGCGGAGGGGGGGGTGGAGGAAGCTTTC
TTACTTGCCCTCCTCCAAGCCTGCAAGCGCCTCGGCCTCTGGCAAGAAGC
TCAACGCATCCTTCGAACCTCCCCCCTCTCCTCCTCTACGCCCACCACCA
CCCCTCCCACCGTTTATTACAGCCTCGCCATAGGCGCATGTGGCCGTGCC
TCCCCTCCCCAACCTCAAGCTGCCCTAGACCTCTTCCACAGCATGCGGCA
TCCCCCCGATGCCATAACCTACCTCGAGCTCCTCCGCACTTGCTCGGCAG
GCCAACGAGGAAACGACGCTGTCGCCCTCCTTCTCCGTCCTTCCATTTCC
CCGCCTCCCCCTACATCTTTTCTGCATGATCTTCGCTCCTACCACGGGGC
CATGCGTGTATGTCTACAGACAAAAGAGTACCCTACCGTGCTCCGGCTCT
GGGCGTCGTTACGCGTCAAGGGAGGGGGGGAAGGAGGCCTGGCACCAAGT
GACGTGACATGCAATTATCTAGTGCGGGCATGTCTGAACTCAGGGAGGTG
GAAAGAGGCCTTGAGGGCGCTAGAGCAGCGCGGGGTGCTAAGGGCTATCG
CTGGTGAGGGAGGAAGGGGAGGAGGAAGGGAAGAAGGAAGGGGGGGGACG
TCGGATTTTACAGATGCTTCTCTTTCGGAAGGGCGGGCAGAGTCCGGTGC
GGTAGGATTGGACATCGAGGGGGTTGAAGATACTTATGACGCCGCGCTCT
CCAACCAACACTGCAACATTACCACTACAACCGGCGGCAGCAGCAGCAGC
ACCAGCACCAGCACCAGTCACCATCGTCGACACCCGAACGGCCCTATTCT
CCTTCGTGAGTTATACCTGGTCGCATTGACGGCTTATGAGCGAGACCGTG
ATTGGCCCCGCTTTCTTCACACACTCCAAGCCCTCGCCCGACATTTGGGG
GGTGGGCCTCGGGAGGTGGATGAGGACGAGGACGGAGGGGAGGAGGAAGA
CAGTCGTCTGACACGCACGTGTAACCGAGCAGTGACTTGTGCGGTGAGGG
AGAGGAAGTGGGAGGCCGCCGTTTCTTTACACAAGGGGATGCAGCAGACT
GGCCTGAGAGTGCGGCCAGACCTGATGGCCTACAACGCCACGATGAAAGg
tacgtcccccaccctctatcactcccctcccctccctccatcttcttgca
ctctcggtacacccacactcctaccatacaacagCCCTATCCGAGCTGGG
CAAACACGAGGAGGCCCTGTCTCTCCTCGACGAAATGGTGGAAAAAAGAG
GCCTGGTCCCGGACGAAATGTCGTTCTCGACCATGATTCACGCGTGTGGG
AAGGCAGGGGAATGGAGGCGGGCCTTGGGGCTGCTGCATGCCATGGAAGC
GAAACTTTCTATCAATGCTGCGCGAGGGAGGGAGAGAGGAAGGGAGAAGG
GCGAGGAGGAAGAAGAGGAGGACGAAGGGGTTTGGGTCGTGGGAGGGAGT
GACATGGCGGTGGCGGCGGCGGTGGATGCTTGCACTCGTAGTGGCCAATT
GGACGAAGGATTAAAACTGTGTGAAGAGATGCTCTTGCACCGTAACACCA
ACGCTGCCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGATATGTTTGT
AGTCCCGTGATTCATAGCACAATGATCACCTTGGCATGTCGCGCGGGAGA
CTTGCCGCGGGCCTTGGCGCTGCTGGAGGAGTTGAGGGCGAGAGGCGCCC
ACCCTGATGTGGTGACATACACGACGGCTGTCAAAGCCTTGGGCAGGGCA
GGACAGGCAAAGGAGGCTCTATCCCTCTTCACTGCAATGCGTGAAGATCC
CCATTTGGAGTTGAACGACGTGAGCTACCACACGGTTTTGGACGTATGTG
CGCGGGGTGCGAGGGCCATACCGGAGTGTGCAGTGACAGCAGTGGAGCTC
TTGAGGGGGATGCAGCAGGATGGGTTGCGGCCTGGTGTACTTGGGTATCG
GTCGGTGCTGCAGGCGTGCGGGCTGGCAGGAAGGTGGGAAGACGCTATGA
TGTTGTTAAGAGAGATGGAGGGGGAGGGAGGGAGGGAGGGAGAGGGGGAT
GAGGTGGCTTATACCACGGTGATCAATGCATGTGCGGCTGCGGACGAGGT
CGATGCAGCCCTTCGATTGCTGGAGGAGATGACTGATAAAGGACTCACTC
CCAACGTCGTCGCCTATTTCGCCGTTGTCCGCGCCTGTAAGCGCACTGGC
CGGTGGGAGCAAGCGCTGGTACTCCTAGATGATATGCAGGCTCGTGGCAT
CCCTCCTGTCTCTGCGATCTTCGAGTTTGCCGCGGACGCCTGTGTGGCTG
CCCGGCAACTCACTCACGCCTCCTCCCTCTTGCGATTGATGAGGGAGCGT
GGTTTGGACCCTCCCGAGGGCATCTATGTCCGCGCAATTTCCCTAGCCCT
TGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGGGGGGGGAGC
AGGAAGGCGAAGGAGGAAAAGAGGCGCTACGGCTTTTGTGTGAAATGGTG
CGACATGGAGCGACGCCTCGCAGGCCACTTTACACGGCAGTAATGCAGGC
AGCAGCAGCAGCAGCAGCAGCAATGGGAGGGGGAGGGAGAGAGGGAGGGA
AAGAAGGGGGATGGGGAGGAGTGTTTGCGGCACTTGGTCAGACCGCGAGT
GCGTTGTTGGGGGAGACGATGGAGGAGAGGGGAGGGCGGGAGGGAGGGAG
GGAAAAGGTTAGAGGGGTGAGAAAAGGGCTAGAGACCGTGCGAGAGATGG
CCTTGGTGGCGGCAGCAGCAGCAGGGGACTGGCGTCGGGCCTTGCTGTTG
CTGAGGGAGAAAGAGGCAAGTGGTGGTGATGGAGGAGGGGGAGGATGGAG
GGAGGGCAGGAGGGAGAGCGGGAGGGATGGAGTGATGGATATTTGGGGCC
ACTATGCGTGTGCGGTGGAGGCATGCGGAAGGGCCGGGCGTGTGCAAGAG
GCAGTGGCGCTGTTGGAAGGACAAAGTCATGGCCATGGAAGAGGAGGAAG
GAGGGAGGGAGGAAGAGGGGGAGAGCGAGTGCTGAGTCAGGTGATTGAAG
CCCTGGGAGGGACGGGGCACGGGATCGAGGCGCTCGAAATGGCCAAGTGC
GCACTGCGTGGAGCAGTGGTGGCACCGTCGTCGGGTAGCAGCAGCAGCAG
CAGCAGCAGCAGTACTACTACTACCAACAGTGATGCCGATAGTAGTATTG
GAAGTAGCAGCTTGTCGGCATTGCGTTCTGAACGCCTGCGAAAGAAGCAG
ATGGAGAGGCGACGGCATCTACAGCAGCATCACCAGCAACACCGGCAGGA
CCACCACCGGCTTTCCGAGGACGAAGGTGGCCATCCCATTTCATGGTTCC
CTTTCCCACAGCCGCACCGCAGGCTTCCCGGACACCAACGGCACCAGCAG
CAGATCTCAAGGCCTGCCTGGCAGACCCTCCTACGCGTCGCCAAGGCCCA
GGTACAGGAAGAGAGGGAGGGAGAAAAAGGAGGAGGGAGTGGTAGACAGC
TGACGAAGAACGGGAGGGAGAATCTGTTGTGGGTTCTAGGTGCTATGTTT
GACGCGGGCATCCCCCCCAGTAACGGCGATGTCGATTGGGTCGTACAAAC
GCTTGCGACAGCTAGGGAGTGGGACGCTTTGCACAAAGTGCTTGAGAAGG
TTGCAATGGCTGCTTCTTTTTCTAGAGGAGGAGTGGGCGATGAAGGCAAC
GGTAGCCGTGGCCGGGGTAGCTTGGACGTGATAGGATGCAACCGTCTGTT
GCATGCCTTGGCGAGGGAAGGGGAGGGAAAGCGGGCTTTGGACTTCTTGA
GCTTTATGGAGGACAGGTTAGGGGTGCCTCCTGATGTAGTGTCGTACACT
AGTGTGATTGATGCTTTGGCGAAGAGCGGGGAATGGCAAGAGGCGGTGCG
ATTGTTGGAGACGATGGAGGAGAGGGAGAGCACGAAGGAAGGGTGGGAGG
GAGGAGGTGTGGCGTTAAGACCGAATGTAAGGACGTACACGGTGGCAATG
CAAGCGTGTGCAAAAGCAGGAAAGTGGCAACAGTGTCTAGCGCTGATGGA
TAGATTGATGGAAAAAGGGATGAAGCCTGACGCGTTTTCGTGCAGTATAG
CATTGGATGCATGTGCTCGTGCCAAGCAACCTGAGGCGGCTCTGACGCTG
TTGGAAAAGATGGAGGAAGGTGGACTGGCTGTGAGACCTGACGTGGTGTC
CTACACTAATGTCATCCGCGCATTTGAAGGAGGGGGTAGTGAAAATGCTC
ATGTGGAGCGAGCAAAGGCAGTTCGGGATCTATTGAAGCGCGTCAAGGCA
TGGGGCGTACGACCGGACATCATGCTTTGGAATAGCGCCTTGCGCGTCTC
CGTCAAGCTAGGGCAGTGGCAATTAACACAAGAAATCTTGAAAGAGATGG
ACCGCGATAGCATCGTGCCTGATGAATGGACAGTACGGGCCGTGACGAGT
GGAGGTCGGGTGGAAGGGAGCGCGGGGCGAGAGCGGGGGCAGACGTTGGC
CCTGCTGCGGACTATGCAGGATCGGAACAAAGgtcagagaatgcccctga
gaggagggagaaatatgcctcgaatgcgagggagcgtgtaaaatagacag
gaatgtacaggtctcctgtaaaaaaagtaaatgatatggacgtttattac
ttgtttgatttttttttaaatgctataactgatcgccgttacacgactgt
gtgtcgtctccgcttgtcgacccttgcccttgtgtcaccacaggcatgta
agaatagagtgcacacgacttcaattcctctataacctcttcagctcctt
agttctaagaagttcatggtatgcacgcatgatgatgcagccaaactgtg
tcgatgctgttaccccatcctctcacaacactatctctcacccctgcttt
attacagaacagggaaggcgagacatcacgcatcaccatgcaaaagagga
cattgtcactatcttttctggttggtgccttgtgcattttgccttcgcca
acccagtcatccccttttcaagacactaaaacgactcacccgcatgggta
cctccgctccgcctcagATGGCGCCCCTTCGTCGTCGTCCTTCTTGCGTG
GCATGATGTACGACCCAGGCAATCCGGCCGCTCCCCAACCCCAGCCTATA
AGCACTCTCGAAGAACAACGACATGGTGCCAAGATGCTCGACAATGGGGA
CCCCGAAGAAGAGGAGGAACGTTTGGTTGAAGGCCGCAAGTCCGCTGTCT
CTGAAAAGATCGACCCCCTTGCAGCGACGCGCCACGCCGGCAAGATACTT
GATAATGGGGAGCCTGCGGCACCTGAACCCCTGCCCTTGCTCCCGCAGCA
CCAAGAGCAGGAATGGATGTTTGATACCGGTGAGGTGATTGCATCTAAAC
CTGTGCCTCCGCAGTCCACGGCCCTGCCCATTAAACCTCCTGTGACGCTA
GCTGCCCTCCCTCCTCCGACCGATGTGGTGGACGTTGGCGACTCTCAGCG
CATGTATGACAATGAAGAAATTACCGCCCCGCAGGTCCTGTCTCCGCCTC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGATGTTGGCAATTGTTCCT
GAGCCCTTGGCTACCACTCCCGCCCCCACGGCCACTCCTCAAGTCTTCCA
CGGATCAAAGATCATGGACGACAACGGAGGAACGAGCTGA
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protein sequence of NO08G00350.1

>NO08G00350.1-protein ID=NO08G00350.1-protein|Name=NO08G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=2034bp
MSFPTSIPHRLTQVGRMLRGIQQHRRHHMVLRQAATIRGAGQTHPLQNPP
HSCSLWTQSTISLGLRRLNPEAHADLQRLLQHGQLENAMAFLSSLRGQGL
YPAPGLVDHFTRLCVNSRRREVAWGMLRQEGIPAHVATYKTLLESYARSL
PPSQDKITGSPQSQQQRQQQRQQQQQLPQAFRLLEEMKTLHHVRPDAACY
LVVLQGCAEAGEWQEAMRLRKELLSSLATPSEMEVTEEAATMARKKSLAL
LLQALARDGQLAKALNLLQDHAEIGNADMNAVAALLEGGMAREGGMEEAL
GVITSLRNTPWWLRQKQDLQQQHQEQDRQQQIRGKAEGGVEEAFLLALLQ
ACKRLGLWQEAQRILRTSPLSSSTPTTTPPTVYYSLAIGACGRASPPQPQ
AALDLFHSMRHPPDAITYLELLRTCSAGQRGNDAVALLLRPSISPPPPTS
FLHDLRSYHGAMRVCLQTKEYPTVLRLWASLRVKGGGEGGLAPSDVTCNY
LVRACLNSGRWKEALRALEQRGVLRAIAGEGGRGGGREEGRGGTSDFTDA
SLSEGRAESGAVGLDIEGVEDTYDAALSNQHCNITTTTGGSSSSTSTSTS
HHRRHPNGPILLRELYLVALTAYERDRDWPRFLHTLQALARHLGGGPREV
DEDEDGGEEEDSRLTRTCNRAVTCAVRERKWEAAVSLHKGMQQTGLRVRP
DLMAYNATMKALSELGKHEEALSLLDEMVEKRGLVPDEMSFSTMIHACGK
AGEWRRALGLLHAMEAKLSINAARGRERGREKGEEEEEEDEGVWVVGGSD
MAVAAAVDACTRSGQLDEGLKLCEEMLLHRNTNAAGGREGGREGGRYVCS
PVIHSTMITLACRAGDLPRALALLEELRARGAHPDVVTYTTAVKALGRAG
QAKEALSLFTAMREDPHLELNDVSYHTVLDVCARGARAIPECAVTAVELL
RGMQQDGLRPGVLGYRSVLQACGLAGRWEDAMMLLREMEGEGGREGEGDE
VAYTTVINACAAADEVDAALRLLEEMTDKGLTPNVVAYFAVVRACKRTGR
WEQALVLLDDMQARGIPPVSAIFEFAADACVAARQLTHASSLLRLMRERG
LDPPEGIYVRAISLALEQQQQQQQQQRQQGGEQEGEGGKEALRLLCEMVR
HGATPRRPLYTAVMQAAAAAAAAMGGGGREGGKEGGWGGVFAALGQTASA
LLGETMEERGGREGGREKVRGVRKGLETVREMALVAAAAAGDWRRALLLL
REKEASGGDGGGGGWREGRRESGRDGVMDIWGHYACAVEACGRAGRVQEA
VALLEGQSHGHGRGGRREGGRGGERVLSQVIEALGGTGHGIEALEMAKCA
LRGAVVAPSSGSSSSSSSSSTTTTNSDADSSIGSSSLSALRSERLRKKQM
ERRRHLQQHHQQHRQDHHRLSEDEGGHPISWFPFPQPHRRLPGHQRHQQQ
ISRPAWQTLLRVAKAQVQEEREGEKGGGSGRQLTKNGRENLLWVLGAMFD
AGIPPSNGDVDWVVQTLATAREWDALHKVLEKVAMAASFSRGGVGDEGNG
SRGRGSLDVIGCNRLLHALAREGEGKRALDFLSFMEDRLGVPPDVVSYTS
VIDALAKSGEWQEAVRLLETMEERESTKEGWEGGGVALRPNVRTYTVAMQ
ACAKAGKWQQCLALMDRLMEKGMKPDAFSCSIALDACARAKQPEAALTLL
EKMEEGGLAVRPDVVSYTNVIRAFEGGGSENAHVERAKAVRDLLKRVKAW
GVRPDIMLWNSALRVSVKLGQWQLTQEILKEMDRDSIVPDEWTVRAVTSG
GRVEGSAGRERGQTLALLRTMQDRNKDGAPSSSSFLRGMMYDPGNPAAPQ
PQPISTLEEQRHGAKMLDNGDPEEEEERLVEGRKSAVSEKIDPLAATRHA
GKILDNGEPAAPEPLPLLPQHQEQEWMFDTGEVIASKPVPPQSTALPIKP
PVTLAALPPPTDVVDVGDSQRMYDNEEITAPQVLSPPQQQQQQQQQQPML
AIVPEPLATTPAPTATPQVFHGSKIMDDNGGTS*
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Synonyms
Publications