NO08G00250, NO08G00250 (gene) Nannochloropsis oceanica

Overview
NameNO08G00250
Unique NameNO08G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1370
Alignment locationchr8:102498..103867 +

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Properties
Property NameValue
Description60s ribosomal protein l31
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:102498..103867 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023621Ribosomal_L31e_dom
IPR000054Ribosomal_L31e
Homology
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_014671736.1 (PREDICTED: 60S ribosomal protein L31-like isoform X1 [Priapulus caudatus])

HSP 1 Score: 154.8 bits (390), Expect = 1.600e-34
Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+  T+V+TR YTI+LHKRLH + FK+RAPRAI EIKKFA K +GT DVRVDT LNKFIW +G+RNVP+RVRV+LAR+RNEDE++  KL+TLVT V   +FKGLQ  +VD
Sbjct:   10 KKGKSAITEVITREYTIHLHKRLHSVGFKKRAPRAITEIKKFAEKQMGTPDVRVDTRLNKFIWSKGVRNVPYRVRVRLARKRNEDEDSIHKLFTLVTYVATTAFKGLQTVNVD 122
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_014671737.1 (PREDICTED: 60S ribosomal protein L31-like isoform X2 [Priapulus caudatus] >XP_014671739.1 PREDICTED: 60S ribosomal protein L31-like isoform X2 [Priapulus caudatus])

HSP 1 Score: 154.8 bits (390), Expect = 1.600e-34
Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+  T+V+TR YTI+LHKRLH + FK+RAPRAI EIKKFA K +GT DVRVDT LNKFIW +G+RNVP+RVRV+LAR+RNEDE++  KL+TLVT V   +FKGLQ  +VD
Sbjct:    8 KKGKSAITEVITREYTIHLHKRLHSVGFKKRAPRAITEIKKFAEKQMGTPDVRVDTRLNKFIWSKGVRNVPYRVRVRLARKRNEDEDSIHKLFTLVTYVATTAFKGLQTVNVD 120
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: AHB12478.1 (60S Ribosomal Protein L31 [Pantala flavescens])

HSP 1 Score: 154.8 bits (390), Expect = 1.600e-34
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+   +VVTR YTINLHKRLH + FK+RAPRAI+EI+KFA+K +GT DVRVDT LNK +W +GIRNVPFR+RV+L+RRRN+DE++  KLYTLVT V V +FKGLQ  +VD
Sbjct:    8 KKGKSAINEVVTREYTINLHKRLHGVGFKKRAPRAIKEIRKFAVKQMGTPDVRVDTRLNKQVWSKGIRNVPFRMRVRLSRRRNDDEDSPNKLYTLVTFVPVATFKGLQTENVD 120
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_011062991.1 (PREDICTED: 60S ribosomal protein L31 [Acromyrmex echinatior] >XP_012057300.1 PREDICTED: 60S ribosomal protein L31 [Atta cephalotes] >XP_018047756.1 PREDICTED: 60S ribosomal protein L31 [Atta colombica] >XP_018336964.1 PREDICTED: 60S ribosomal protein L31 [Trachymyrmex septentrionalis] >XP_018373709.1 PREDICTED: 60S ribosomal protein L31 [Trachymyrmex cornetzi] >EGI60224.1 60S ribosomal protein L31 [Acromyrmex echinatior] >KYM83307.1 60S ribosomal protein L31 [Atta colombica] >KYN11681.1 60S ribosomal protein L31 [Trachymyrmex cornetzi] >KYN45263.1 60S ribosomal protein L31 [Trachymyrmex septentrionalis])

HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+   +VVTR YT+NLHKRLH + FK+RAPRAI+EI+KFA K +GT DVR+DT LNK +W +GIRNVPFRVRV+L+RRRN+DE++  KLYTLVT + V SFKGLQ  +VD
Sbjct:    7 KKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRIDTRLNKQLWSKGIRNVPFRVRVRLSRRRNDDEDSANKLYTLVTYISVSSFKGLQTENVD 119
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_011697673.1 (PREDICTED: 60S ribosomal protein L31 [Wasmannia auropunctata] >XP_011697674.1 PREDICTED: 60S ribosomal protein L31 [Wasmannia auropunctata] >XP_011697675.1 PREDICTED: 60S ribosomal protein L31 [Wasmannia auropunctata] >XP_011872713.1 PREDICTED: 60S ribosomal protein L31 [Vollenhovia emeryi] >XP_011872714.1 PREDICTED: 60S ribosomal protein L31 [Vollenhovia emeryi] >XP_011872715.1 PREDICTED: 60S ribosomal protein L31 [Vollenhovia emeryi])

HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+   +VVTR YT+NLHKRLH + FK+RAPRAI+EI+KFA K +GT DVR+DT LNK +W +GIRNVPFRVRV+L+RRRN+DE++  KLYTLVT + V SFKGLQ  +VD
Sbjct:    7 KKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRIDTRLNKQLWSKGIRNVPFRVRVRLSRRRNDDEDSANKLYTLVTYISVSSFKGLQTENVD 119
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_012532955.1 (PREDICTED: 60S ribosomal protein L31 [Monomorium pharaonis])

HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+   +VVTR YT+NLHKRLH + FK+RAPRAI+EI+KFA K +GT DVR+DT LNK +W +GIRNVPFRVRV+L+RRRN+DE++  KLYTLVT + V SFKGLQ  +VD
Sbjct:    7 KKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRIDTRLNKQLWSKGIRNVPFRVRVRLSRRRNDDEDSANKLYTLVTYISVSSFKGLQTENVD 119
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: KRT85827.1 (ribosomal protein [Oryctes borbonicus])

HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+   +VVTR YTINLHKRLH I+FK+RAPRAI+E++KFA+K +GT DVR+DT LNK +W +GIRNVPFR+RV+L+RRRN+DE++  KL+TLVT V V +FKGLQ  +VD
Sbjct:    8 KKGKSAINEVVTREYTINLHKRLHGISFKKRAPRAIKEVRKFALKQMGTSDVRIDTRLNKQLWSKGIRNVPFRIRVRLSRRRNDDEDSANKLFTLVTYVPVATFKGLQTENVD 120
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_397314.1 (PREDICTED: 60S ribosomal protein L31 [Apis mellifera] >XP_003251167.1 PREDICTED: 60S ribosomal protein L31 [Apis mellifera] >XP_003694062.1 PREDICTED: 60S ribosomal protein L31 [Apis florea] >XP_006610340.1 PREDICTED: 60S ribosomal protein L31-like [Apis dorsata] >XP_016904587.1 PREDICTED: 60S ribosomal protein L31 [Apis cerana] >XP_016904588.1 PREDICTED: 60S ribosomal protein L31 [Apis cerana] >PBC26996.1 60S ribosomal protein L31 [Apis cerana cerana])

HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34
Identity = 74/113 (65.49%), Postives = 93/113 (82.30%), Query Frame = 0 
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+  ++VVTR YT+NLHKRLH + FK+RAPRAI+EI+KFA K +GT DVR+DT LNK +W +GIRNVPFRVRV+L+RRRN+DE++  KLYTLVT + V SFKGLQ  +VD
Sbjct:    7 KKGKSAMSEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRIDTRLNKQLWSKGIRNVPFRVRVRLSRRRNDDEDSANKLYTLVTYIPVASFKGLQTENVD 119
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: GAU97140.1 (hypothetical protein RvY_08492 [Ramazzottius varieornatus])

HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 0 
Query:    6 KAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K    +VVTR YTIN+HKRLHK+ FK+RAPRAI+EI+KFA   +GT+DVRVDT LNKF+W +GIR VPFRVRV+L+RRRNEDE++  KLYTLVT V V+ FKGLQ  +VD
Sbjct:   11 KGATNEVVTREYTINVHKRLHKVGFKKRAPRAIKEIRKFAKVQMGTEDVRVDTKLNKFVWSKGIRGVPFRVRVRLSRRRNEDEDSPHKLYTLVTWVPVEGFKGLQTNNVD 120
[Close]
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_009821807.1 (60S ribosomal protein L31 [Aphanomyces astaci] >ETV89407.1 60S ribosomal protein L31 [Aphanomyces astaci])

HSP 1 Score: 154.1 bits (388), Expect = 2.700e-34
Identity = 71/106 (66.98%), Postives = 92/106 (86.79%), Query Frame = 0 
Query:   11 DVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVDE 117
            DVV+R YTINLHKRLH  TFK++AP+A+REIKKFA KA+GT DVR+D+ LNKF+W QG+RN+P+RVRV+L+R+RNEDE+A EKLYTLV  V+V ++KGL   +V+E
Sbjct:   16 DVVSRDYTINLHKRLHGATFKKKAPKAVREIKKFAQKAMGTADVRIDSKLNKFVWSQGVRNIPYRVRVRLSRKRNEDEDAKEKLYTLVQHVQVSTYKGLSTENVEE 121
The following BLAST results are available for this feature:
BLAST of NO08G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_014671736.11.600e-3466.37PREDICTED: 60S ribosomal protein L31-like isoform ... [more]
XP_014671737.11.600e-3466.37PREDICTED: 60S ribosomal protein L31-like isoform ... [more]
AHB12478.11.600e-3466.3760S Ribosomal Protein L31 [Pantala flavescens][more]
XP_011062991.12.100e-3465.49PREDICTED: 60S ribosomal protein L31 [Acromyrmex e... [more]
XP_011697673.12.100e-3465.49PREDICTED: 60S ribosomal protein L31 [Wasmannia au... [more]
XP_012532955.12.100e-3465.49PREDICTED: 60S ribosomal protein L31 [Monomorium p... [more]
KRT85827.12.100e-3464.60ribosomal protein [Oryctes borbonicus][more]
XP_397314.12.100e-3465.49PREDICTED: 60S ribosomal protein L31 [Apis mellife... [more]
GAU97140.12.100e-3468.18hypothetical protein RvY_08492 [Ramazzottius varie... [more]
XP_009821807.12.700e-3466.9860S ribosomal protein L31 [Aphanomyces astaci] >ET... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009048NSK009048Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00250.1NO08G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G00250.2NO08G00250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581836gene_3347Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101201g2gene4028Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00250.1NO08G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G00250.2NO08G00250.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00250 ID=NO08G00250|Name=NO08G00250|organism=Nannochloropsis oceanica|type=gene|length=1370bp
ACAGGAAAGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCAC
CAGgtatgttgcatggatacgggcaacaaggggaggaagggagagagatg
gtggaggatggggaagctgaggtttccaggagaaaaaggagacggcctta
agaagcagccccgccatcttacgtgcaagtcctgcttgaaagccacctca
tgggtcgggactggtttgcggtgcttgctccggtcaaaatcgattgtctc
tcatgaaaattccctacgcccatgcctacgctcatttctcctcgtcacca
gaagcaaccctcctcactcactccttcctctacgatcgatcgccccactt
tcccctctttcctgcacagGCTCTACACCATCAACCTGCACAAGCGTCTG
CACAAGATCACCTTCAAGGAGCGTGCCCCCCGTGCCATTCGCGAGATCAA
GAAGTTTGCGATCAAGGCCCTGGGCACCAAGGATGTCCGCGTCGACACTG
Ggtgcgtagccgccctccctccctccctccctctctccgtccctccctcc
ctccctctcttctcattttttctcctttcgtggggctcatctattttcct
cctggggctcaggccatcaaatatggacggtctagtgtttgcatgaccgc
gtcgtcaccagtatcgcgtgcgtgcttcctccactcactcaccttcctcc
cctttctccctccctctgcatctccttctcactcagCCTGAACAAGTTTA
TCTGGAAGCAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTC
GCCCGCCGACGCAACGAGGATGAGGAGGCGACGGAGAAGgtgaggaggaa
gggagggagggaggaagggacagaaaagaggggtgcgacaacagggagat
cgacaaaaggaagatagcaggaggggtagacacggtttagagagaatcgg
aaggaaaggttaggaaggaaggaggtgggaaggaaggagggagggaagga
agatatggccttcgggcacacattatattactgtagacgtactgaacccc
ctttcctccctctctccctctctcttcccatttcttttatttgacagCTG
TACACACTGGTGACGCTTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAA
CGCTTCCGTTGACGAGTAGAGGGTCCGGAGAAGGGAGGGAGGGAGGGAGG
GAGGGAGAGAAGGAGAGCCCTTACTGTCATAATTTTAATTGGTGCTTGAC
CTTGGCTCTGGTGTGGATGCATCTCTTTTTCCGGGTGGATCAGAGAGGGA
AGGAGAGAGGGAGAAAAGGTTAATGTCTGAGGACCTTCAAAAAGAAGAAA
TCAGGAAGTTCTCCCCCATT
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protein sequence of NO08G00250.1

>NO08G00250.1-protein ID=NO08G00250.1-protein|Name=NO08G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALG
TKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTL
VEVDSFKGLQNASVDE*
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protein sequence of NO08G00250.2

>NO08G00250.2-protein ID=NO08G00250.2-protein|Name=NO08G00250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALG
TKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKVRRKGGR
EEGTEKRGATTGRSTKGR*
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Synonyms
Publications