NO08G00250, NO08G00250 (gene) Nannochloropsis oceanica

Overview
NameNO08G00250
Unique NameNO08G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1370
Alignment locationchr8:102498..103867 +

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Properties
Property NameValue
Description60s ribosomal protein l31
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:102498..103867 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023621Ribosomal_L31e_dom
IPR000054Ribosomal_L31e
Homology
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_005853763.1 (large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526] >EKU22597.1 large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526] >EWM26499.1 60s ribosomal protein l31 [Nannochloropsis gaditana])

HSP 1 Score: 213.8 bits (543), Expect = 2.900e-52
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 0
Query:    1 MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVDE 117
            MVKA KAPK DVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVD  LNK+IWKQGIRNVP+RVRVKLARRRNEDEEA EKLYTLVTLVEVDSFKGLQN SVDE
Sbjct:    1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKLYTLVTLVEVDSFKGLQNTSVDE 116          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_004206070.1 (PREDICTED: 60S ribosomal protein L31-like [Hydra vulgaris])

HSP 1 Score: 162.2 bits (409), Expect = 1.000e-36
Identity = 77/113 (68.14%), Postives = 95/113 (84.07%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K+ K+P  +VVTR YTINLHKR+H + FK++APRAIREIKKFA K +GT DVR+DTGLNK++W  GIRNVP R RV+LARRRNEDE++  KLYTLVT+V+VDSFK LQ  +V+
Sbjct:    9 KSTKSPMNEVVTREYTINLHKRIHDLPFKKKAPRAIREIKKFAKKMMGTTDVRIDTGLNKYVWSHGIRNVPRRARVRLARRRNEDEDSANKLYTLVTVVKVDSFKKLQTINVE 121          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: OTF70593.1 (hypothetical protein BLA29_010333 [Euroglyphus maynei])

HSP 1 Score: 160.6 bits (405), Expect = 2.900e-36
Identity = 78/114 (68.42%), Postives = 95/114 (83.33%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVDE 117
            K  K+   +V+TR YT++LHKRLH + FK+RAPRAI+EI+KFA K + T+DVR+DT LNKFIW QGIRNVPFRVRV+LARRRNEDE++  KLYTLVTLV V +FKGLQ  +VDE
Sbjct:   11 KKTKSALNEVITREYTVHLHKRLHGVGFKKRAPRAIKEIRKFAQKQMATEDVRIDTRLNKFIWSQGIRNVPFRVRVRLARRRNEDEDSVHKLYTLVTLVPVATFKGLQTDNVDE 124          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_022103062.1 (60S ribosomal protein L31-like [Acanthaster planci] >XP_022103063.1 60S ribosomal protein L31-like [Acanthaster planci])

HSP 1 Score: 157.9 bits (398), Expect = 1.900e-35
Identity = 75/113 (66.37%), Postives = 97/113 (85.84%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K A++   +VVTR YT++LHKR+H ++FK+RAPRAI+EI+KFA+K +GT+DVRVDT LNK IW +G+R+VPFRVRV+LAR+RNEDE++  KLYTLVT VEV SFKGLQ  +VD
Sbjct:    8 KKARSALNEVVTREYTVHLHKRIHGVSFKKRAPRAIKEIRKFAMKMMGTEDVRVDTRLNKHIWSRGVRSVPFRVRVRLARKRNEDEDSPHKLYTLVTHVEVPSFKGLQTVNVD 120          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_002116073.1 (expressed hypothetical protein [Trichoplax adhaerens] >EDV21473.1 expressed hypothetical protein [Trichoplax adhaerens])

HSP 1 Score: 157.5 bits (397), Expect = 2.500e-35
Identity = 76/113 (67.26%), Postives = 96/113 (84.96%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K +++   ++V+R YT++LHKRLH + FK+RAPRAI+E+KKFAIKA+GT DVRVD+GLNK IW +GIRNVPFRVRV L+R+RNEDE+A  KLYTLVT V V+SFKGLQ  +VD
Sbjct:    7 KKSRSAIDEIVSREYTVHLHKRLHGVGFKKRAPRAIKELKKFAIKAMGTTDVRVDSGLNKHIWSKGIRNVPFRVRVCLSRKRNEDEDAANKLYTLVTHVPVESFKGLQTVNVD 119          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_015781089.1 (PREDICTED: 60S ribosomal protein L31-like [Tetranychus urticae])

HSP 1 Score: 157.5 bits (397), Expect = 2.500e-35
Identity = 77/114 (67.54%), Postives = 93/114 (81.58%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVDE 117
            + AK+   DV+ R YTIN+HKR+H   FK+RAPRAI+EIKKFA K +GT DVRVDT LNKFIW +GIRNVPFRVRV+L+R+RNEDE++  KLYTLVT V V +FKGLQ  +VDE
Sbjct:    8 RPAKSAINDVIQREYTINIHKRIHGKGFKKRAPRAIKEIKKFAFKQMGTSDVRVDTRLNKFIWSKGIRNVPFRVRVRLSRKRNEDEDSPNKLYTLVTYVNVATFKGLQTENVDE 121          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: Q9XGL4.1 (RecName: Full=60S ribosomal protein L31 >CAB45375.1 ribosomal protein L31 [Cyanophora paradoxa])

HSP 1 Score: 157.1 bits (396), Expect = 3.200e-35
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0
Query:    6 KAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K+   ++VTR YTINLHKRLH + FK+RAPRA++EIKKFA K +GT DVRVD  LNKF+W QGIR+VP+RVRV+LAR+RN+DE+A EKLYTLVT V V SFKGLQ  +VD
Sbjct:    8 KSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTYVPVTSFKGLQTQNVD 117          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: KFM77525.1 (60S ribosomal protein L31, partial [Stegodyphus mimosarum])

HSP 1 Score: 156.4 bits (394), Expect = 5.500e-35
Identity = 78/113 (69.03%), Postives = 94/113 (83.19%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+  ++VVTR YTI+LHKRLH + FK+RAPRAI+EI+KFA K +GT DVRVDT LNKFIW +GIRNVP+RVRV+L+RRRNEDE++  KLYTLVT V V SFKGLQ  +VD
Sbjct:    8 KKGKSALSEVVTREYTIHLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFIWSKGIRNVPYRVRVQLSRRRNEDEDSIHKLYTLVTHVPVTSFKGLQTENVD 120          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: ABI52770.1 (ribosomal protein L31 [Argas monolakensis])

HSP 1 Score: 156.0 bits (393), Expect = 7.200e-35
Identity = 76/113 (67.26%), Postives = 93/113 (82.30%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K  K+   +VVTR YTI+LHKRLH + FK++APRAI+EI+KFA K +GT DVRVDT LNKFIW +G+RNVPFRVRV+LARRRNEDE++  KLYTLVT V VD+FK LQ  +V+
Sbjct:   12 KRGKSTLNEVVTREYTIHLHKRLHGVGFKKKAPRAIKEIRKFAEKQMGTSDVRVDTRLNKFIWSKGVRNVPFRVRVRLARRRNEDEDSPNKLYTLVTFVPVDTFKKLQTVNVE 124          
BLAST of NO08G00250 vs. NCBI_GenBank
Match: XP_023721473.1 (60S ribosomal protein L31 [Cryptotermes secundus] >PNF19264.1 60S ribosomal protein L31 [Cryptotermes secundus])

HSP 1 Score: 156.0 bits (393), Expect = 7.200e-35
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 0
Query:    3 KAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTLVEVDSFKGLQNASVD 116
            K +K+   +VVTR YTINLHKRLH + FK+RAPRA++EI+KFA+K +GT DVRVDT LNK +W +GIRNVPFRVRV+L+RRRN+DE++  KLYTLVT V V SFKGLQ  +VD
Sbjct:    8 KKSKSAINEVVTREYTINLHKRLHGVGFKKRAPRAVKEIRKFAMKQMGTPDVRVDTRLNKQVWSKGIRNVPFRVRVRLSRRRNDDEDSPNKLYTLVTYVPVASFKGLQTENVD 120          
The following BLAST results are available for this feature:
BLAST of NO08G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853763.12.900e-5293.10large subunit ribosomal protein L31e [Nannochlorop... [more]
XP_004206070.11.000e-3668.14PREDICTED: 60S ribosomal protein L31-like [Hydra v... [more]
OTF70593.12.900e-3668.42hypothetical protein BLA29_010333 [Euroglyphus may... [more]
XP_022103062.11.900e-3566.3760S ribosomal protein L31-like [Acanthaster planci... [more]
XP_002116073.12.500e-3567.26expressed hypothetical protein [Trichoplax adhaere... [more]
XP_015781089.12.500e-3567.54PREDICTED: 60S ribosomal protein L31-like [Tetrany... [more]
Q9XGL4.13.200e-3569.09RecName: Full=60S ribosomal protein L31 >CAB45375.... [more]
KFM77525.15.500e-3569.0360S ribosomal protein L31, partial [Stegodyphus mi... [more]
ABI52770.17.200e-3567.26ribosomal protein L31 [Argas monolakensis][more]
XP_023721473.17.200e-3567.2660S ribosomal protein L31 [Cryptotermes secundus] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009048NSK009048Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00250.1NO08G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G00250.2NO08G00250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581836gene_3347Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101201g2gene4028Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00250.1NO08G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G00250.2NO08G00250.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00250 ID=NO08G00250|Name=NO08G00250|organism=Nannochloropsis oceanica|type=gene|length=1370bp
ACAGGAAAGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCAC
CAGgtatgttgcatggatacgggcaacaaggggaggaagggagagagatg
gtggaggatggggaagctgaggtttccaggagaaaaaggagacggcctta
agaagcagccccgccatcttacgtgcaagtcctgcttgaaagccacctca
tgggtcgggactggtttgcggtgcttgctccggtcaaaatcgattgtctc
tcatgaaaattccctacgcccatgcctacgctcatttctcctcgtcacca
gaagcaaccctcctcactcactccttcctctacgatcgatcgccccactt
tcccctctttcctgcacagGCTCTACACCATCAACCTGCACAAGCGTCTG
CACAAGATCACCTTCAAGGAGCGTGCCCCCCGTGCCATTCGCGAGATCAA
GAAGTTTGCGATCAAGGCCCTGGGCACCAAGGATGTCCGCGTCGACACTG
Ggtgcgtagccgccctccctccctccctccctctctccgtccctccctcc
ctccctctcttctcattttttctcctttcgtggggctcatctattttcct
cctggggctcaggccatcaaatatggacggtctagtgtttgcatgaccgc
gtcgtcaccagtatcgcgtgcgtgcttcctccactcactcaccttcctcc
cctttctccctccctctgcatctccttctcactcagCCTGAACAAGTTTA
TCTGGAAGCAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTC
GCCCGCCGACGCAACGAGGATGAGGAGGCGACGGAGAAGgtgaggaggaa
gggagggagggaggaagggacagaaaagaggggtgcgacaacagggagat
cgacaaaaggaagatagcaggaggggtagacacggtttagagagaatcgg
aaggaaaggttaggaaggaaggaggtgggaaggaaggagggagggaagga
agatatggccttcgggcacacattatattactgtagacgtactgaacccc
ctttcctccctctctccctctctcttcccatttcttttatttgacagCTG
TACACACTGGTGACGCTTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAA
CGCTTCCGTTGACGAGTAGAGGGTCCGGAGAAGGGAGGGAGGGAGGGAGG
GAGGGAGAGAAGGAGAGCCCTTACTGTCATAATTTTAATTGGTGCTTGAC
CTTGGCTCTGGTGTGGATGCATCTCTTTTTCCGGGTGGATCAGAGAGGGA
AGGAGAGAGGGAGAAAAGGTTAATGTCTGAGGACCTTCAAAAAGAAGAAA
TCAGGAAGTTCTCCCCCATT
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protein sequence of NO08G00250.1

>NO08G00250.1-protein ID=NO08G00250.1-protein|Name=NO08G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALG
TKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKLYTLVTL
VEVDSFKGLQNASVDE*
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protein sequence of NO08G00250.2

>NO08G00250.2-protein ID=NO08G00250.2-protein|Name=NO08G00250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALG
TKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKVRRKGGR
EEGTEKRGATTGRSTKGR*
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Synonyms
Publications