NO08G00200, NO08G00200 (gene) Nannochloropsis oceanica

Overview
NameNO08G00200
Unique NameNO08G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1936
Alignment locationchr8:80644..82579 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:80644..82579 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G00200 vs. NCBI_GenBank
Match: EWM26508.1 (hypothetical protein Naga_101473g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 216.9 bits (551), Expect = 1.100e-52
Identity = 114/185 (61.62%), Postives = 136/185 (73.51%), Query Frame = 0 
Query:    1 MGAGIELPVDSQSRMAVGAVGMGFSLLLFLVASFRLGKFCQAYGWKLREVMGDSFGRKRLSIHLLLVIGTCFVIPLYALLLHTH------LSSXXXXXXXXXXXXXXXXXXXXXXFLSSPSSSTPSFCLGLLSLLRFQLLCTLAALGLVLSDWRIDVYEAPLLRARRVWMYQIRDAATAGLLVVA 180
            MGAG+ELPVD+QSR+AVG++GMGFS+LL + AS RL +FC AY W+ RE++ DSFGRKRL+IHL+LV GT FVIPLYALLLH        LSS                            SS+P+FC+GLL+L+RFQLLCTLA+LGLVLSDWRIDVYEAPL RARRVWMY++RDA TAGLL +A
Sbjct:    1 MGAGMELPVDNQSRLAVGSIGMGFSVLLCITASVRLSRFCLAYEWRFREIVSDSFGRKRLAIHLVLVAGTWFVIPLYALLLHARPPHPSTLSSLLSSFHFLFSSSLPSSSFPSLSLFEPAPSSSPTFCMGLLALIRFQLLCTLASLGLVLSDWRIDVYEAPLHRARRVWMYELRDAVTAGLLCLA 185
The following BLAST results are available for this feature:
BLAST of NO08G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26508.11.100e-5261.62hypothetical protein Naga_101473g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009039NSK009039Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00200.1NO08G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581816gene_3341Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101473g2gene4017Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00200.1NO08G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00200 ID=NO08G00200|Name=NO08G00200|organism=Nannochloropsis oceanica|type=gene|length=1936bp
ACACCAGAGGCCACAGCACGCTGTAGCTAGTTCACTGCGAGTCGATTCAT
GCCACCTCTTGCCTCCAAGTGGTAATTCCTGCCAGCCTTGTCTGCCAAAA
ACGCTTCACTGTCATCCTCGCCGTCGTGCATCAAGCAAGCATGGGCGCAG
GCATTGAGTTGCCCGTAGACAGCCAGAGTCGCATGGCCGTGGGTGCCGTG
GGGATGGGATTCTCATTGCTCTTATTTCTCGTGGCATCTTTTCGCCTCGG
CAAGTTTTGTCAGGCGTATGGATGGAAGTTGCGAGAGGTCATGGGgtgag
tgacagagttgagggagcatgggcaagggaagaggggcagggtgggactg
ggggaggagataaaggagaagggaagcaaaagagacactcgtccacgcaa
tgactcatgcattcacgactttacacgtacacatgtcatgttcacacagG
GACTCATTTGGGCGGAAGCGTCTGAGCATTCACCTCTTGCTTGTTATTGG
GACATGCTTTGTCATTCCTCTCTACGCACTCCTTCTCCACACCCACCTTT
CCTCATCCTCCTCCACCTCCACCATCACCTCTCCCATCCTCTCCTCCGTC
CTTTTCACCATTTCCACTTCCTTCCTGTCCTCCCCCTCTTCCTCTACTCC
ATCCTTCTGCCTGGGCCTGCTCTCCCTCCTCCGTTTCCAGCTCCTCTGCA
CCCTCGCCGCACTCGGCCTCGTCCTAAGTGACTGGCGAATCGACGTCTAT
GAGGCGCCTTTGCTCCGGGCCCGACGCGTGTGGATGTACCAAATCCGGGA
TGCGGCGACGGCGGGGCTGTTGGTGGTGGCTTTCCTCTTGAACGTGGCAG
GACCAGCCTTCTGCCTCGACAAGCGGTGGGCGGAGGAGAACGAGTACATC
Ggtaggtgagaggcggaggagaagggaggaggagagtgaaggaaggaggg
agaagggggggggtcggcacaggaaactcgtcgacccgccaaacgtcact
ctcacctcctggccaccctcccgccttccctcccagGTGACGATTCGTCC
ACCTCGAGCAATAGCGGCGGTGGCACCGCCCAGGCCTACGTGGTGGATGC
CGCCTACCTGGTTCAACTTGCCTGTGCCTTCCTCCTTATGCTCTCCATGT
TGTACAGCGGGCTACAGgtgggaagggagggaaggagggaaaatgggaag
gagcgaggggccgctcacttgaactcagcagtcccacccatctgcccttc
tcgcctgatccacgccgctgcatccctcccctccattctcttttccctcc
gtccccccatcaaagATGAAGAAACGGCTCGTGTGGGCCTCCCGCTCTCC
CCTTCGTCAGCACGACCTCTTCCGCATCGCCCTCCTCCAGCTTAACATCC
TCCTGGCTTTCTGCATGGCAGCCTTTTGCGCCCAAGTCATCACGCTGGCC
TTCAACTACGTCCAGCTCGTGGTGTACCACCGCACACTTCTGCCAGgtgc
gtcctggtggttgcccttcctccctccgtccttccctccctccccgctct
tcgtttggcatgcggtctgcctcctgcttcgctggctcaccctctcctcc
ctccctcccccctccctccctccctccctccctaagACATCTGGCTGTGG
GTGGTCGGGGCCTGGTTCCCTCTCGCCGCATGGTCCGCCTCCTGCCTCTA
CCTCGCCCGCAAGGCCAAGAGGGCGTATGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGATGGCAGGGGCGACTCCCAGAGAACGGGAGTACGCGCAAGCG
TTGCTAGGGAGAGAAGGGGCTGGGGTTTAAAGGAAGGGAGGGAGAGAGGG
AGAGACGGTGTGTATATAAATGTACGTACGTAGGACGAGGTTGAAGTCAT
CACACAACAGCACGAAGAACGAATGGAGGGAGGGAG
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protein sequence of NO08G00200.1

>NO08G00200.1-protein ID=NO08G00200.1-protein|Name=NO08G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MGAGIELPVDSQSRMAVGAVGMGFSLLLFLVASFRLGKFCQAYGWKLREV
MGDSFGRKRLSIHLLLVIGTCFVIPLYALLLHTHLSSSSSTSTITSPILS
SVLFTISTSFLSSPSSSTPSFCLGLLSLLRFQLLCTLAALGLVLSDWRID
VYEAPLLRARRVWMYQIRDAATAGLLVVAFLLNVAGPAFCLDKRWAEENE
YIGDDSSTSSNSGGGTAQAYVVDAAYLVQLACAFLLMLSMLYSGLQMKKR
LVWASRSPLRQHDLFRIALLQLNILLAFCMAAFCAQVITLAFNYVQLVVY
HRTLLPDIWLWVVGAWFPLAAWSASCLYLARKAKRAYGGREGGREGGMAG
ATPREREYAQALLGREGAGV*
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Synonyms
Publications