|
|
Properties
| Property Name | Value |
|---|
| Description | Signal transduction histidine kinase, hybrid-type, ethylene sensor |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr8 | genome | chr8:51672..56104 - |
Analyses
This gene is derived from or has results from the following analyses
Homology
BLAST of NO08G00130 vs. NCBI_GenBank
Match: WP_104521689.1 (PAS domain S-box protein [Rhodopila globiformis] >PPQ27977.1 hypothetical protein CCS01_25725 [Rhodopila globiformis]) HSP 1 Score: 64.7 bits (156), Expect = 8.200e-7 Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0
Query: 10 AMSTADLVIAIAYFFIPVEINMYLLRRRHMMHLHPRFWFTGALFISFILLCGLTHLFNMLNL---PTNVILFTKWATAIVSVSTSLLLLHVIPEALSLP 106
A + +D V A+AYF IPV + ++ RRR ++ P FW LF +FILLCG THLF++L L V K ATA+VS+ T+++L ++P+AL+LP
Sbjct: 27 AYAFSDGVTALAYFTIPVALGIFAHRRRDLV-FRPVFW----LFATFILLCGTTHLFDVLTLWIPAYGVQAVVKAATALVSIVTAVVLWPLLPQALALP 120
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G00130 ID=NO08G00130|Name=NO08G00130|organism=Nannochloropsis oceanica|type=gene|length=4433bp
TTCAAAAAAATGTTGATTTGCTGAATGACAATGACTCATTTGCTTTGCTA
AGTGACGCCTCCAACCTCCTCACCCCTCCTCCCCCCCTCATTCATATAAT
AGTACCATCCATACATTGCGCTCGGATGTTCAAATTCCAAATAAAGTTTG
CCACCACAATGATCATTCTTGTTTCTTACTCGCTTGCATCAGAGCTCCAA
GAAGAACAAGTGGAAAGAGGCGATAAGCGAGGAATTGTTATCTCTTTGAG
CGAGGCGAGTGGCGGCAAAACGACATGTCCAATGCCTGGGAACCACAAGA
CACACCATGACGAGCACGAGCGAGAATGTCCACAGATGAGGTCTATTATG
TTTACTAATTGTCTGCTTCCTCCCCGCGCCAATGCCATAAGTGACGAGAA
TATCATGATGTTGAGCAGCTTGTCTGTTGGTCTGTTTATGGGGTACCCGT
ACACCAGCACGCAGCTCCAGGAAGACCATCACGCGCTCTCTGCCGGAATT
CATCCTTATTTTCCTCATTCCGCATACAGCCTTTAACCCACCTCACGCAG
GCGTAGCGCAGCCAAGTGAATTCCGGTGCGTCACGAGCTGGAGGAGGAGC
GCAGCAGCACAAGGCACAAGCAAGAGCAGCGGCTTGTTTAGAAGCCATAG
TAGCACCAGCATCTTCTACGCTGCCTTTGGACATTTCTCCCTATCAAACG
AGTGGTAGTATTTTCAGAGAGACAAACCGATCACCGCGACAAAGGGGCCT
GCCAGTCTAATCACTCAAGGGCATTTACCTTGAACTGCTTCTTTGACGTC
CCATTACATCTCGCCTTGAGCGACCATGCGCATCGATGGCTCAGGCGTGA
GCGCCATGAGCACGGCCGACTTGGTCATTGCCATTGCCTACTTTTTCATT
CCCGTGGAGATTAACATGTACTTGCTGCGTCGTCGGTGCGTGCCTGTGGA
AGGGAGAGAAGGAGGGGGGGAGGGAGGGGAAGGAGGGCAAGCGTTCGGGC
GTGCCGAGAAAGGGTGTCGCCTGCTATATACACCCTTCCACCTATCTTAT
TGCTACTTTCATCCCTTTTCCTCTCTCATTACCCTCGGCAGGCACATGAT
GCACCTGCACCCCCGCTTCTGGTTCACCGGGGCGCTCTTCATCTCCTTCA
TCCTCCTCTGCGGCCTCACGCACCTCTTCAATATGCTCAACCTGCCCACT
AACGTCATCCTCTTCACCAAGTGGGCTACGGCCATCGTCTCCGTCAGCAC
CTCCTTGCTCCTCCTCCATGTCATCCCTGAGGCGCTCTCCCTTCCCCAGT
TCATAAAAGAATTGACCTTTGAGAACAAATCAATGAAGGATTTCCGAGGG
GTCATGGTAGCCGTGCGCCGCGACCTTAGGGAGGAGGCCATCATCGACAA
CGCCCGCCACAAGCTCCGACGTATCCTTCCTGCGCGGACCCTGATCGACA
TATCCACCGACGCCATTCCCCCCCACTTCCTCCACGCCCCTCGTGACGTC
CTCACCCTCCCTATCATGGGCGGTCTCTCCATGCACCTGCGACGGTCCCG
CGTAAACGAGGCCCAAGTCATGTGGCTCCACGACGTATGCCTGCAGATGA
AGCAAGCCCTCCAACAGGCCGCCCACCTCCGCAACAATTTCCAATCCAAC
ATGCAGCATCATCAGCCAGTAGGGGGACTTGACGGTGAACCTTGTCTGAC
CCAGTTGAACTCCTCCTCCTCCTCCTCCTCTTTGTATGTGACAGGAAAAG
GACGAGACGAAGGGTTAGAAATGCTGGGAGGGAGACACGTTGATAAAGGG
AGTGAGGAGGCATGCCGCACCCGCCTATACTCATCGACGACCTCGGTCCA
CAAGGTCGCGCCAACTAGCTGCATTACGTCCAAGGCAGCCTCCTCCGCCC
TCGCGCCATCCCTCCCTCCCTCCCCCCAGTCAGCTGTGTTTAAGGCACCG
TTTTTGGCCACTGCTGCTGCTGCTGCTGATGGTCCAGTCGCCCCTGTTTG
TTTCCATCGAAATTCCTCCAGCTCCTCCACGGCGTTGCCTGTGGCCGCTT
TGGGAGGAGAGGGCACCTTATATCCGCACTCCCACGGCCAGGAGGAGAAG
CAGCAGCAGCTCCAGCACCAACTCGACCAGCAACAGGAACGAAAGGATGA
CAGGGGTCCCCCTTTTGAGAAGGTGGACAGGGTGTGGGAGGCCGAGTGTG
CGCTGGCAAGGCTGAGGATTAAGTGCGCCGGAATCTTAAGTCGGGTGCTC
ACCTTGGTGGATTTCATGGATgtgagcagagcgggagagtaaaaaagggg
aggaaggcgaagaagggggactaaattggtggcgtaatagttgagcatca
gtcacagaactgctactcccattctttcatcccgccatgtacgtacgtat
ataactcacgttcacatctctctcttcctcccgcccatcttcactcgaca
tacagATAGAGTCCTTGACGCCATTTCAGAAGAAATGTATGGTCTTGATC
AAAGAGGCGGCTCAAGCAGACCTGGTATAGCTGTCGCAGCAGCAGTAGAT
ACATATGCATAGACGACACAGAGGGAATAAAGTTAGGTACAAAAAGACCT
GTGAAACAGAGCAGTAAAAAAAACTCTTAAAAAATGGACAGAGAAGCACA
TAAAATTATCCAGTGATGTTTTTAAATGTGCACCGTGATGAAAGAACATG
TGCATCGCCTCTATCAGGGAGGATGCTTGTATGAGTGTCTTTGCGCATGA
ATGCACGGCTGTATGCGTACGTTTGTGTACAAAAAGAAATAAAGTGATAG
AAAGAAGAAATACACGTGACTAAGAATAGGCGACCTTCACTTTGTTGGAA
AAGATTGATATGAACTTTGATCTCGGTATCTCCTTTTGTTAGAAACGTAA
GTACACATCTCTACCGCCCGAAAGTTGCACACTTTGCTGGGTTGAAGGTA
TGGGCGCTCTTCTTTCGTTTTCGTCTAGGGCTGGCCATGGTATACCATGG
TCGTGAATACCGCCTTATCGTTGATAAGGCACCGGGGTGAGCAAGCATCG
CTGGGTAGTGAGGAAAGACGAGAGGGCCCATTGGGTCGAGCAGCAGCAGT
AGCTCTGGGGCACAGTTGCGACATTTCGAAGAGGCGGGGAAGCCCTATTT
CCCCCCCTCCCCTACCAAGACGAAGGGCATAAGCATCGATGATGATGGCA
ACAATCAGCTGATTCGCGGCAAACAGCGGTGGCGGCAGTTGCTGTGTCAA
ATAAACGCACAACAGTGCACGGCGTCATTTGTTCCTTTGTAGCTTTCACG
GCGTTCAACGAGCTTGGAAAATACTGCATACTTTCTCGTTGTAGTGCATA
GTATATTCTCTGTGGCTTTCGCTTCCAAGCCGCAGCATTAGCACGAGTGT
CTTGCCGAAAGTGCGACCAATTTCCGCGCAACGGTCCGTGCCGTTAGGAG
GCTGGAGTGCGACCGCTACCGTTGCCCTGAAATCTTGAAATTATTACCTT
ATTTACGCAAATATTTCTACATATTTTCATAGACAATGCGTCAGTCAATT
TGATCTTGCACACTGACAATCTGATGATACCTGTCCAGGTTTGCTCTTCC
GGTAAGATAATCTTCTCACCTTCATCTATGCCCTCCCTCCTCCATTTGCG
GAGCACCTACTTAGGGCTTTCATGGCGCATAATGTTACTCTGTAACATTA
TGACATGCCTGCGGACACTCTCATCGTCCCAGAATGGGGGGGTGGATTAT
GGGGATGTGCTTCTTCAAAGTTGAGTAGACCTGTTGGGTGTGAAGTAGGT
GAGGGGGAGGAGGGAAAGGAAAGTTAGAGGAGGGGAAGGCGTCTTTTCTG
AGCATTTGAAAGCTGATAGGGACAGGCGGAGAGAGGAAGGGAAGGAAAGA
GAGATTCTTGCCTTGATCTGGACCATATTACTTTTTTTTTTGGTGGTTGG
GTGTGTAGCGTAGGCCTGTGCGGAGTGCGTGTAGGTGTGTAGTGAGGCGT
GTTAGCGGTGCGCACTGTGGCCTCTAGTATTCATTGGAAGATCTTTCAAC
GTTCTACCGGAAGTCCAGTACCGCCGCTTGCGCCCGAGGTTCTGAGCGGG
GCGGCCTGGCTGTGGGGCAGATACCGGAATACTTGTGGTGGTTACCTCGA
GGGCTGGAAGGCCGTCAATAATCTGGTTTGATGCATAGGGAGTGTGTCGT
ACAGGCCACGGGCCATCAAAATGATAAACAGGAAATGTCGCCTTGACGTC
TCTCGATGCCCCTTTGCCCCTTATGCGGTTAGGAGAGGGTTGGCGGATCG
AAGATGGAGCGTCTCAGAGGTCAAATTTGCTGGAAGAAAGAAAGATGAAG
TGTCACGCAGGTACAAAGGCGCACGTCAAAGAATAAAGAAAAAGAAAAAT
GTCAAGCACACATGTTTTTGGAAGAGGATAAAC back to topprotein sequence of NO08G00130.3 >NO08G00130.3-protein ID=NO08G00130.3-protein|Name=NO08G00130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MRIDGSGVSAMSTADLVIAIAYFFIPVEINMYLLRRRCVPVEGREGGGEG
GEGGQAFGRAEKGCRLLYTPFHLSYCYFHPFSSLITLGRHMMHLHPRFWF
TGALFISFILLCGLTHLFNMLNLPTNVILFTKWATAIVSVSTSLLLLHVI
PEALSLPQFIKELTFENKSMKDFRGVMVAVRRDLREEAIIDNARHKLRRI
LPARTLIDISTDAIPPHFLHAPRDVLTLPIMGGLSMHLRRSRVNEAQVMW
LHDVCLQMKQALQQAAHLRNNFQSNMQHHQPVGGLDGEPCLTQLNSSSSS
SSLYVTGKGRDEGLEMLGGRHVDKGSEEACRTRLYSSTTSVHKVAPTSCI
TSKAASSALAPSLPPSPQSAVFKAPFLATAAAAADGPVAPVCFHRNSSSS
STALPVAALGGEGTLYPHSHGQEEKQQQLQHQLDQQQERKDDRGPPFEKV
DRVWEAECALARLRIKCAGILSRVLTLVDFMDIESLTPFQKKCMVLIKEA
AQADLV* back to topprotein sequence of NO08G00130.2 >NO08G00130.2-protein ID=NO08G00130.2-protein|Name=NO08G00130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MRIDGSGVSAMSTADLVIAIAYFFIPVEINMYLLRRRHMMHLHPRFWFTG
ALFISFILLCGLTHLFNMLNLPTNVILFTKWATAIVSVSTSLLLLHVIPE
ALSLPQFIKELTFENKSMKDFRGVMVAVRRDLREEAIIDNARHKLRRILP
ARTLIDISTDAIPPHFLHAPRDVLTLPIMGGLSMHLRRSRVNEAQVMWLH
DVCLQMKQALQQAAHLRNNFQSNMQHHQPVGGLDGEPCLTQLNSSSSSSS
LYVTGKGRDEGLEMLGGRHVDKGSEEACRTRLYSSTTSVHKVAPTSCITS
KAASSALAPSLPPSPQSAVFKAPFLATAAAAADGPVAPVCFHRNSSSSST
ALPVAALGGEGTLYPHSHGQEEKQQQLQHQLDQQQERKDDRGPPFEKVDR
VWEAECALARLRIKCAGILSRVLTLVDFMDVSRAGE* back to topprotein sequence of NO08G00130.1 >NO08G00130.1-protein ID=NO08G00130.1-protein|Name=NO08G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MRIDGSGVSAMSTADLVIAIAYFFIPVEINMYLLRRRHMMHLHPRFWFTG
ALFISFILLCGLTHLFNMLNLPTNVILFTKWATAIVSVSTSLLLLHVIPE
ALSLPQFIKELTFENKSMKDFRGVMVAVRRDLREEAIIDNARHKLRRILP
ARTLIDISTDAIPPHFLHAPRDVLTLPIMGGLSMHLRRSRVNEAQVMWLH
DVCLQMKQALQQAAHLRNNFQSNMQHHQPVGGLDGEPCLTQLNSSSSSSS
LYVTGKGRDEGLEMLGGRHVDKGSEEACRTRLYSSTTSVHKVAPTSCITS
KAASSALAPSLPPSPQSAVFKAPFLATAAAAADGPVAPVCFHRNSSSSST
ALPVAALGGEGTLYPHSHGQEEKQQQLQHQLDQQQERKDDRGPPFEKVDR
VWEAECALARLRIKCAGILSRVLTLVDFMDIESLTPFQKKCMVLIKEAAQ
ADLV* back to top
|