NO08G00110, NO08G00110 (gene) Nannochloropsis oceanica

Overview
NameNO08G00110
Unique NameNO08G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3738
Alignment locationchr8:40719..44456 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:40719..44456 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00110.1NO08G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|357310gene_3331Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100141g2gene4002Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00110.1NO08G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00110 ID=NO08G00110|Name=NO08G00110|organism=Nannochloropsis oceanica|type=gene|length=3738bp
CGCGGGAATGGGGTCGAGGCCTGTGTGCATAGCATGAGGGGGGGAGAAGG
GGGGAGGAGGTGGCGGGAACATGAGCATGTGGGTGGGTGGTGGGATAATG
AAGTCCGGGCGGCATAGCCCAGACGCCCGGCATTTGCGCCCGTGCAAGCA
GGATGTGCATGTGCAGATCAGCAGACAGCAGTGTGGGTAGAGTGCGGCGT
CTGTTGAGAGTCTTCGCCTTCTTTGTTCCGGCGTCGTGCTTCCTTTCTGC
TACAGCATTTTGCTTTCAGACTCGACGCCCACCCCACCATCGCCCGTGGC
CGCTAAACCCCACGCTGGTTAAGGCATCAATAGGCAAATGTGTGTAGGCA
GTGGGCGGGGAGATTGTTGGGCCATGGGTGTCTGGGGATGGATGGAGGTG
TGAGTTTTTCAGAGGGCTTCGTTTTGATTGATCATCTACCAGTAACGAGT
CAGGCAGTTGCTGGGGCGAAGGAGAGGCGAAATCCTCAGTCACTGTACAT
GCCTCCCGGTACACATCTCGTGGTTCCCGGCACTCAGAAGACAGCGAATG
CTGTGCTGTACCTGGTACAGGCTCCATCCCCCCAGACGCCACTGAAATGA
AGCTTTTATCGTACCACACGGGCGAGCAAGATGATAAGGGGGCCTTCTCC
AAAATAATAATAACGCAAAGCGCGAAGAACTATGTATGTTTCGTTCACAC
CCCCTGTTGGAACATGCTTGTGGTGATGGTTGTGTTTCGCAATTCGGCAG
ATTTGTTGCTTTCAGCTGGCCTTGCGCGGCGTGCAAATTGCAATGCATTC
TTTCTCGTGCGTAACTCATGATTTTATCATTATCCACTGTTTTTGATCTT
CGCCCTTTCCCCCCACCCAACGTGATTATCACAGTAAAACATCCTCCTCA
AGGCTCTTCGCATCCCGCCCTACGCCACCTTGCCGGTACCATGGCCCAAT
GGGTGCTACCACCCACGAGCCTGCTCCTCCTGCTGTGCCTGGCCACCACC
CTCACCGCCAGCAATGTCGGCATTACCAACTCCGTGGCTACGTCCGCGCG
TACAGGTTCAAACATTTACAAAGTCGACGAGAAAATAATTGgtgcgttga
gtcgatcagcaaatagaggtgggagggaggtagctgtgcctatagatata
tggaagggaaagcctgcctggcggaggatgtgatgcggtactctcaatgt
ggaatgggctgctgtctccttgaggtatgagggagtttgtgacgcaatca
cttgaggcccgtctgcatctcccatttgcacagctctttcgtatatattt
ctgatcgttgctatgcgttgaccggcatcattgccttttccacgcactct
ctgctctgcaccactttctccgtttctacctcccttcttccagccctcaa
tctctccctcccttctccttcaaaaccagtatcactcatcttatcttatc
ttctcctcacccacacactcacccatccctcaaatcgcttccttgccttt
ctcccgaaaagGGACGGTCTCCGACGCCCTCCCCTCCCCTTCCCGCCTCC
TCCGCCTCTCACCAAACCAGGGGGGCGTCCGTCACAAAGTTATACACGAC
TTTCTCTCCTCCACTTTTCTGGTCATTGCTATTGTGGCGATGTTCCTGGT
AGTGTTGTGTGTGATAAATTGTAGTTGCAATCGATTATGCCCTTGTCTGT
GCGGGGACGAAGCAGCAATCGTTCGAGCCGAGCTGATGGCGATGGAAAGG
AGGTCAGTCGGAAAGGACGAGGAAGGAGAGGTCGAGGACGTTCAGGGCGG
AACAGGGGGCAAGGATAGCGTGGCAGATGAAGTAGGGATCGCGATGGTAG
CGGGAGAGGAGAAGAAAGAAGGGGAGGAGGGAGACACGAAGGAGGGAGGG
GGAAGGATGAAGATAGACGATGAGGAATCGGAGGCGTCCGTTTCACTTTC
AACGCCCTTGAAGTCCTTGTCCTCGTCGCTGCTAGCGCTGCTTGCGATGA
AAGCATGGAGCTCACCGACAGCAGGGATTTCTGAAGGAAAGCAGGAAGAG
AGGTCGAAGAAGGTGGAGCAGGAGATGGCGCAGCAGCAGGAGGAGGAGAA
GGATGCAGGCAGGGAGGGAGGGATGAAAAAATTGGGGGAAACGTTTGAGC
TGCAAATGCAGCGGTTAAAGGAAAGGGAGGGAGGGTTGGAAGGAGGGTTG
ATAGAAGAATCGAAGGAGTGCTTGGCGGTGGAGTAAAAAAGATGGAGAGA
GAAAGAGGCGATGAAGGGAGGGAGATAGGGAGAATTACAGCGCCCTTGAT
TGGTTGGACGGGAGAGGAGATTCGAGGCGCGGGGCGGAATGGAGTGAAGT
CTTATTGCGGAAATTTTGAAGAAAGATAAGAGAAGACCTTAGATGACATA
ATATAGGGGGGGGGGATACCAAGAGTGAAATAGTCACCGGTAGGAAATTT
TCCTCCAAAAAGATTTGTCTGTGAGGCAGCAATCGAAGAGAGAGGGGGAA
GCGGAAACACGGAGACAGAGAGACCTAAATGCGCTCCTCGGAAAGGAGGC
AATAAAGCACCAAAACTGTAGGAAAATGATCCCCATCGCATTGTAGAAAG
GTTTCCTTATGCTTGCTCTTCCGATTTACACTTTCTTTTTCCACTTGCTT
GCCTTTCTTCGCCCTTTTCAGCGCATCTCTTGGTCTGCCATGTGCAACTG
CATCACCCCTGGCCGCCATTTTCCCTGCGAACATGTAGTGATGTGGTTCC
TTACTGACTTTTCTCGTCCTGATTTAGCGTGCCATTGCCTCAGTAATTTG
TCTTACACCATGGCCGACGCAGGGCGGCCTCCACCTCCGTCCTTACTTCC
TCGTTCTCTCCCTCTTCCCCTTCCCCCTCCGACCGAGCTTGTCTCATGGG
GCTTGCCACCCTTTCGTCTTTCCTCTCCTCCGTCTCCCCCCACCCCCTCA
ACCCAGAATCGATTTTTAATCTTCATTTCCTCCATGGCCTCTCGCAGACG
ATGCTTCCTTATCATTGTCTCCTGCGCAGTCGCTTTTCGTTGCTCTAATA
AGTACGCCCTCTCTCGCTTGATTTCCTCGTACCGCGCCGTGTCCGCCTCC
TGCCTTGCCAACAAACACGATTTTTCATACTCTTCCTTCCGCTGTATCCT
TTTGACGTTCTCCTCCTTATCTTTCTGCCTCAGCTCCTTCTCCACTCGCA
TTAACAGCGTGGCTTGTGCTCGCTCTGCTGCCACCTTAGCGTAGAAATGT
GCGCGATTCTCTGCCCGAGTCAACGTTTTCTGTATACGATCTTGCAGTCC
TTGTACAGCACATTGATAGCGCTCGTCCGCCTTGGCTTGCTTGGCCTTGC
GCCCCTCGGCCGCTTTGGCCGCTGCCTCCAACAGCTCCACGTGATTCTGC
TCCGCGCGGGCAGCAGCCTCGGCTGCTCTTGCTTGGTAATCTTTGCGTTT
GGCCTCTTGGATCGCATGATTTCTGAGCAACGCACCTTGAATTCGTTTTT
CAGCTTTGTTCCGTGCAGTCTGGATCTCATTAGCTTTTGCTTCCTTCTTC
GCCATCACCTGGGCCTTGACTCTGGCCTCGCGCGCCTCAATCTCGCGGCG
TTGGGCCTCTCCTCGCCGTTCCTGGTCTTTTAGAATCTCTTCTGTACGCT
GCCGCAAGACCTCGAGCTTGGCACGGCGCTCTTCTTCGCGAAGGACAGCT
TTATGGCGTCGTATTCGCTCTGCCGCCCGGGCCTCAGC
back to top

protein sequence of NO08G00110.1

>NO08G00110.1-protein ID=NO08G00110.1-protein|Name=NO08G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MILSLSTVFDLRPFPPPNVIITVKHPPQGSSHPALRHLAGTMAQWVLPPT
SLLLLLCLATTLTASNVGITNSVATSARTGSNIYKVDEKIIGTVSDALPS
PSRLLRLSPNQGGVRHKVIHDFLSSTFLVIAIVAMFLVVLCVINCSCNRL
CPCLCGDEAAIVRAELMAMERRSVGKDEEGEVEDVQGGTGGKDSVADEVG
IAMVAGEEKKEGEEGDTKEGGGRMKIDDEESEASVSLSTPLKSLSSSLLA
LLAMKAWSSPTAGISEGKQEERSKKVEQEMAQQQEEEKDAGREGGMKKLG
ETFELQMQRLKEREGGLEGGLIEESKECLAVE*
back to top
Synonyms
Publications