NO08G00100, NO08G00100 (gene) Nannochloropsis oceanica

Overview
NameNO08G00100
Unique NameNO08G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1884
Alignment locationchr8:39771..41654 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:39771..41654 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G00100 vs. NCBI_GenBank
Match: CBN77673.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 69.7 bits (169), Expect = 3.600e-8
Identity = 52/157 (33.12%), Postives = 89/157 (56.69%), Query Frame = 0
Query:  443 AEGRKAKQAKAD----ERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQETMIRKHRLREAMEEMKIKNRFWVEGVGGDGGEERRKGGK 596
            A+ R   QAK D    +R + + Q   D  +  L R   +  FY ++  ER +   + ++  +L  +DK +N++R++R +E+ +   L R E +T R E+IK ER +L+EQR A A + + +KH+++EAME+M+  N F       DG ++RR+  K
Sbjct:  348 AKKRAEDQAKQDNIRAKRLEASYQDRADHRKDILARRRQKDKFYGQIRNERCKDLAMKKLYHDLVMEDKRQNIERLRRVDEFVRLQTLLRIEQETERTEKIKAEREFLVEQRIAVANKAIRKKHKIKEAMEKMRATNNFHGIDALLDGLDKRRRKSK 504          
BLAST of NO08G00100 vs. NCBI_GenBank
Match: ETI36684.1 (hypothetical protein F443_17200 [Phytophthora parasitica P1569] >ETK76905.1 hypothetical protein L915_16743 [Phytophthora parasitica] >ETL30331.1 hypothetical protein L916_16652 [Phytophthora parasitica] >ETM36771.1 hypothetical protein L914_16576 [Phytophthora parasitica] >ETP06515.1 hypothetical protein F441_17074 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.9 bits (159), Expect = 5.300e-7
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 0
Query:  392 RNKAEKRIQGALLRNHAIQEAKRK---DYQARAAEAAARAEQNHV-ELLEAAAKAAEGRKAKQAKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQETMIRKHRLREAMEEMKIKNRFW 579
            R KA  RIQ    +N      K++   D QA AAE A   E+  + EL E AAK+      ++ + D  +       Q  + + L + E           ER +A LL +VE +L    KE+NV RIQR E Y +  LL R  +  AR   +K  +  LL+ R+  A E MIR+HRL EA+E+++  +  W
Sbjct:  326 REKANARIQNVTYQNELTIARKKQEVTDKQAAAAERAREIEKKTINELKERAAKSXXXXXXRKKRLDAAHALR----QKHVSELLAKREQLEAKMEDTQHEREKARLLAQVEHQLSITQKEQNVARIQRMEAYARQQLLQRIASADARSRAVKERKRALLQARQQVATEAMIRRHRLAEAVEKLRTTSTKW 512          
BLAST of NO08G00100 vs. NCBI_GenBank
Match: XP_008912556.1 (hypothetical protein PPTG_16805 [Phytophthora parasitica INRA-310] >ETN02173.1 hypothetical protein PPTG_16805 [Phytophthora parasitica INRA-310] >KUF96758.1 Reticulocyte-binding protein 2 a [Phytophthora nicotianae])

HSP 1 Score: 65.9 bits (159), Expect = 5.300e-7
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 0
Query:  392 RNKAEKRIQGALLRNHAIQEAKRK---DYQARAAEAAARAEQNHV-ELLEAAAKAAEGRKAKQAKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQETMIRKHRLREAMEEMKIKNRFW 579
            R KA  RIQ    +N      K++   D QA AAE A   E+  + EL E AAK+      ++ + D  +       Q  + + L + E           ER +A LL +VE +L    KE+NV RIQR E Y +  LL R  +  AR   +K  +  LL+ R+  A E MIR+HRL EA+E+++  +  W
Sbjct:  326 REKANARIQNVTYQNELTIARKKQEVTDKQAAAAERAREIEKKTINELKERAAKSXXXXXXRKKRLDAAHALR----QKHVSELLAKREQLEAKMEDTQHEREKARLLAQVEHQLSITQKEQNVARIQRMEAYARQQLLQRIASADARSRAVKERKRALLQARQQVATEAMIRRHRLAEAVEKLRTTSTKW 512          
BLAST of NO08G00100 vs. NCBI_GenBank
Match: ETO65413.1 (hypothetical protein F444_17242 [Phytophthora parasitica P1976])

HSP 1 Score: 65.9 bits (159), Expect = 5.300e-7
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 0
Query:  392 RNKAEKRIQGALLRNHAIQEAKRK---DYQARAAEAAARAEQNHV-ELLEAAAKAAEGRKAKQAKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQETMIRKHRLREAMEEMKIKNRFW 579
            R KA  RIQ    +N      K++   D QA AAE A   E+  + EL E AAK+      ++ + D  +       Q  + + L + E           ER +A LL +VE +L    KE+NV RIQR E Y +  LL R  +  AR   +K  +  LL+ R+  A E MIR+HRL EA+E+++  +  W
Sbjct:  326 REKANARIQNVTYQNELTIARKKQEVTDKQAAAAERAREIEKKTINELKERAAKSXXXXXXRKKRLDAAHALR----QKHVSELLAKREQLEAKMEDTQHEREKARLLAQVEHQLSITQKEQNVARIQRMEAYARQQLLQRIASADARSRAVKERKRALLQARQQVATEAMIRRHRLAEAVEKLRTTSTKW 512          
BLAST of NO08G00100 vs. NCBI_GenBank
Match: ETP34627.1 (hypothetical protein F442_17075 [Phytophthora parasitica P10297])

HSP 1 Score: 65.9 bits (159), Expect = 5.300e-7
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 0
Query:  392 RNKAEKRIQGALLRNHAIQEAKRK---DYQARAAEAAARAEQNHV-ELLEAAAKAAEGRKAKQAKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQETMIRKHRLREAMEEMKIKNRFW 579
            R KA  RIQ    +N      K++   D QA AAE A   E+  + EL E AAK+      ++ + D  +       Q  + + L + E           ER +A LL +VE +L    KE+NV RIQR E Y +  LL R  +  AR   +K  +  LL+ R+  A E MIR+HRL EA+E+++  +  W
Sbjct:  326 REKANARIQNVTYQNELTIARKKQEVTDKQAAAAERAREIEKKTINELKERAAKSXXXXXXRKKRLDAAHALR----QKHVSELLAKREQLEAKMEDTQHEREKARLLAQVEHQLSITQKEQNVARIQRMEAYARQQLLQRIASADARSRAVKERKRALLQARQQVATEAMIRRHRLAEAVEKLRTTSTKW 512          
BLAST of NO08G00100 vs. NCBI_GenBank
Match: KUF94324.1 (Peregrin [Phytophthora nicotianae])

HSP 1 Score: 65.9 bits (159), Expect = 5.300e-7
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 0
Query:  392 RNKAEKRIQGALLRNHAIQEAKRK---DYQARAAEAAARAEQNHV-ELLEAAAKAAEGRKAKQAKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEKELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQRKATAQETMIRKHRLREAMEEMKIKNRFW 579
            R KA  RIQ    +N      K++   D QA AAE A   E+  + EL E AAK+      ++ + D  +       Q  + + L + E           ER +A LL +VE +L    KE+NV RIQR E Y +  LL R  +  AR   +K  +  LL+ R+  A E MIR+HRL EA+E+++  +  W
Sbjct:  326 REKANARIQNVTYQNELTIARKKQEVTDKQAAAAERAREIEKKTINELKERAAKSXXXXXXRKKRLDAAHALR----QKHVSELLAKREQLEAKMEDTQHEREKARLLAQVEHQLSITQKEQNVARIQRMEAYARQQLLQRIASADARSRAVKERKRALLQARQQVATEAMIRRHRLAEAVEKLRTTSTKW 512          
The following BLAST results are available for this feature:
BLAST of NO08G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
CBN77673.13.600e-833.12conserved unknown protein [Ectocarpus siliculosus][more]
ETI36684.15.300e-734.03hypothetical protein F443_17200 [Phytophthora para... [more]
XP_008912556.15.300e-734.03hypothetical protein PPTG_16805 [Phytophthora para... [more]
ETO65413.15.300e-734.03hypothetical protein F444_17242 [Phytophthora para... [more]
ETP34627.15.300e-734.03hypothetical protein F442_17075 [Phytophthora para... [more]
KUF94324.15.300e-734.03Peregrin [Phytophthora nicotianae][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009029NSK009029Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00100.1NO08G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628789gene_3330Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00100.1NO08G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00100 ID=NO08G00100|Name=NO08G00100|organism=Nannochloropsis oceanica|type=gene|length=1884bp
ATGATAATGTCGTCGACCCAACCTTCCTCGTATTCATCCCCGGCAACCGG
CACAAGCCTAGGCGTCTCAATTGTAGGCTATGAAGCGGCGCTAAGACGGG
AGATGGAGCGCATGGCCACAGGAGAGTGTAAATTTTCCGTTGTCCTCAGC
AGCCCGCGCTCTCTTGCGGCGTGCTTGCATGTGGGGCTCACACCAGAGGA
CCTCCGACCCGTCAGTCGATGTGAGTACGACGAATGTCACCTATTTCTAC
CCCGCGTGACTTCCTCGCCAAAACATTTGTCGTCCTCGTCTAGGTCCCCA
CGATCCTCCTCACCTACGATGAAAATGCTGCCACCGGAAGCGCAGGACAA
GATTTACGCTCATTACAAGACACGACTTTTCGAAAAGGTGAACCTTATAA
AAGAGCAACGCCGACAAATGATTATGAAGGCGCGGGGGGAGGAGGGGTAC
AATTTCTTGCTGCTTGATGATGATGATGATGAAGGCGGTACCAACACTGC
TCAAGCGCATGGTGCTGGCAGCCTCGATCCAACAGCTCTGTCTCGAACCC
GAGCCTCTCCACGAAACATCCGTCCCCACGGCAAAGGCGGCGGGGAGGAT
GACAAGGAGCCACACGATATGGAAGCCCGCGCCGCATATTTGAAGTCTGC
CATGATGGAAATGGAGGTACGAAGGATCGAAGCTGTGAAAAAGCGCCAGG
AAAAGGAGTTTTCAAGGATGGTGGAGGGTGAGAAACGGACTATTTTGTTG
CAGCAGAAGCTGTTGGCGGCATCAGAGGAGGAAATGGCCAGGAAGAAGGC
ACACGAGAAAGAAGTGGCATGGCATCGCAAAATTGAATTCCAAAAGAAGC
AGGAACGGGACCGGGAGGTGCAGCGACAAATGGAAGAGGAGCAGAAGCGT
CGGAGGGAAATAGCTCGAAAGGACGGGGCACTCAAGGACAAGTTGACGGC
TGAGGCCCGGGCGGCAGAGCGAATACGACGCCATAAAGCTGTCCTTCGCG
AAGAAGAGCGCCGTGCCAAGCTCGAGGTCTTGCGGCAGCGTACAGAAGAG
ATTCTAAAAGACCAGGAACGGCGAGGAGAGGCCCAACGCCGCGAGATTGA
GGCGCGCGAGGCCAGAGTCAAGGCCCAGGTGATGGCGAAGAAGGAAGCAA
AAGCTAATGAGATCCAGACTGCACGGAACAAAGCTGAAAAACGAATTCAA
GGTGCGTTGCTCAGAAATCATGCGATCCAAGAGGCCAAACGCAAAGATTA
CCAAGCAAGAGCAGCCGAGGCTGCTGCCCGCGCGGAGCAGAATCACGTGG
AGCTGTTGGAGGCAGCGGCCAAAGCGGCCGAGGGGCGCAAGGCCAAGCAA
GCCAAGGCGGACGAGCGCTATCAATGTGCTGTACAAGGACTGCAAGATCG
TATACAGAAAACGTTGACTCGGGCAGAGAATCGCGCACATTTCTACGCTA
AGGTGGCAGCAGAGCGAGCACAAGCCACGCTGTTAATGCGAGTGGAGAAG
GAGCTGAGGCAGAAAGATAAGGAGGAGAACGTCAAAAGGATACAGCGGAA
GGAAGAGTATGAAAAATCGTGTTTGTTGGCAAGGCAGGAGGCGGACACGG
CGCGGTACGAGGAAATCAAGCGAGAGAGGGCGTACTTATTAGAGCAACGA
AAAGCGACTGCGCAGGAGACAATGATAAGGAAGCATCGTCTGCGAGAGGC
CATGGAGGAAATGAAGATTAAAAATCGATTCTGGGTTGAGGGGGTGGGGG
GAGACGGAGGAGAGGAAAGACGAAAGGGTGGCAAGCCCCATGAGACAAGC
TCGGTCGGAGGGGGAAGGGGAAGAGGGAGAGAACGAGGAAGTAAGGACGG
AGGTGGAGGCCGCCCTGCGTCGGCCATGGTGTAA
back to top

protein sequence of NO08G00100.1

>NO08G00100.1-protein ID=NO08G00100.1-protein|Name=NO08G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MIMSSTQPSSYSSPATGTSLGVSIVGYEAALRREMERMATGECKFSVVLS
SPRSLAACLHVGLTPEDLRPVSRCEYDECHLFLPRVTSSPKHLSSSSRSP
RSSSPTMKMLPPEAQDKIYAHYKTRLFEKVNLIKEQRRQMIMKARGEEGY
NFLLLDDDDDEGGTNTAQAHGAGSLDPTALSRTRASPRNIRPHGKGGGED
DKEPHDMEARAAYLKSAMMEMEVRRIEAVKKRQEKEFSRMVEGEKRTILL
QQKLLAASEEEMARKKAHEKEVAWHRKIEFQKKQERDREVQRQMEEEQKR
RREIARKDGALKDKLTAEARAAERIRRHKAVLREEERRAKLEVLRQRTEE
ILKDQERRGEAQRREIEAREARVKAQVMAKKEAKANEIQTARNKAEKRIQ
GALLRNHAIQEAKRKDYQARAAEAAARAEQNHVELLEAAAKAAEGRKAKQ
AKADERYQCAVQGLQDRIQKTLTRAENRAHFYAKVAAERAQATLLMRVEK
ELRQKDKEENVKRIQRKEEYEKSCLLARQEADTARYEEIKRERAYLLEQR
KATAQETMIRKHRLREAMEEMKIKNRFWVEGVGGDGGEERRKGGKPHETS
SVGGGRGRGRERGSKDGGGGRPASAMV*
back to top
Synonyms
Publications