NO08G00020, NO08G00020 (gene) Nannochloropsis oceanica

Overview
NameNO08G00020
Unique NameNO08G00020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5437
Alignment locationchr8:4855..10291 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNA-processing protein, HAT helix
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:4855..10291 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0030515snoRNA binding
GO:0030515snoRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006396RNA processing
GO:0006396RNA processing
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013949U3_snoRNA_assoc-6
IPR003107HAT
Homology
BLAST of NO08G00020 vs. NCBI_GenBank
Match: EWM26483.1 (RNA-processing protein, HAT helix [Nannochloropsis gaditana])

HSP 1 Score: 729.2 bits (1881), Expect = 1.400e-206
Identity = 458/787 (58.20%), Postives = 536/787 (68.11%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEELGGQQQQSETEGEGGREERSEGAFEDLVQEILGGIEEAFGVAEAAWARAKHALTRRGG-QVGGEVEVRATXXXXXXXXXXXXXXXXXXXXXXXXXXXATWVDDEKAVTGWREGLEGGARECMAVLDTTLAAAADLDRNAEEDKNGKRYDLLNKIWQYYLRGLLELLHAPGSVLRAAFARREVALSGEGGREGEVAGGLTLEPGMYLIWASLWVAPSVLSSPLAHHVEEDG-KEEG---NVQEARRVLDKAVKAHPLHARLWEARLRAEAWGEGGRVGDVFTKARQALGPTAGIDELGEGRGSEEEEGEARRIAVAGCWWVYLDWLMLVGGEXXXXXXXXXXXXXXXXXXXXXXXXXXKDGVEWQEEGKRAVSPEVVKALEHALVSTRGPGRVALCRLWHRCLGRRGLQQAMTHMGDGRAEEREDMAALCLEALNDGKEEAGLTGAWFEAALAVCGKAETEEAAALWEAYEIFERGQGRHQAANNVRWRRGKATGEK 783
            MADAVYQALDRMLPALEDLQ+RGLFT EEVRAIA+KRRDFEFLLRRRTARK+DFLRYITHELNLEELR LRK+KAGL K+++SDHAG+ L+HFIFERALRKF+GDLELWLQYLDYC ST SHKAHSRALA+ALQLFPRTAGLWIRAAS+EFFE +SPPAARVLMQRGLRLN  +SALLWTQYFKLEVLYV KL+GRR ALG+E     E+ XXXXXXXXXXXX  +P +EGE              E+D R RSVRAVLAGAVPR+VYL+AI+ARPRDLDMRL+F++ LEE       +ET   G     S   +  LV+E+L G+EEAFG A+AAWARA+H L   GG +   E+  +                                  + +A   W+E L  G R C+  L+T +   A +       K GK  +   K+W YYLRGL E LHAP SVLR AF + + ALS   G          L P MYL WA+LWV  +VLSS      + +G KEEG   +V EARR+L + V+ H  +ARLWEARLRAEAWG+GGRV +VF  A+QALGPTAGID   E            R AVAGCW+VYL+WLM  G           XXXXXXXXXXXXXXXXX            A S +V  ALE AL+STRG GRVA+C LWHR  G  GLQ+A++ MG+G  EE+E MAALC  A+    + +GLT AWFEAALA CG+   ++AAALW+ YE FER QGRH+AANNVRWRR KA GE+
Sbjct:    1 MADAVYQALDRMLPALEDLQIRGLFTPEEVRAIASKRRDFEFLLRRRTARKNDFLRYITHELNLEELRHLRKHKAGLVKTSLSDHAGRGLIHFIFERALRKFRGDLELWLQYLDYCESTGSHKAHSRALAQALQLFPRTAGLWIRAASYEFFERASPPAARVLMQRGLRLNASDSALLWTQYFKLEVLYVMKLKGRRTALGLE----GEEXXXXXXXXXXXXXXQLPLVEGE--EGGVEGMKEVEPEEDLRDRSVRAVLAGAVPRVVYLAAIEARPRDLDMRLSFLKALEE-------AETLEGGVAGAESGQTWGPLVEEVLQGVEEAFGAADAAWARARHVLAGVGGLREVDEMTRKRRKDAGKEGARSSALGGSARKRGRRSSLSLPSGGESEAAEAWKESLRDGPRRCLQALETGVGRVAGI-------KEGKEAE---KMWHYYLRGLCEFLHAPVSVLRVAFPQAQAALSANQGTS-------LLAPAMYLRWAALWVPATVLSSQTEGEGQGEGYKEEGERTDVGEARRILARGVEGHQDNARLWEARLRAEAWGQGGRVEEVFGMAQQALGPTAGIDSREE---XXXXXXXXXRCAVAGCWYVYLEWLMQQG--------VTEXXXXXXXXXXXXXXXXXXXXXXXXXXAMEANSRKVENALEQALISTRGLGRVAICELWHRYTGLTGLQRALSAMGEGGIEEQEAMAALCQRAMRG--DCSGLTVAWFEAALAFCGRVRAQQAAALWDEYEAFERAQGRHRAANNVRWRRAKAMGEE 744          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: XP_009823850.1 (hypothetical protein H257_02061 [Aphanomyces astaci] >ETV87051.1 hypothetical protein H257_02061 [Aphanomyces astaci])

HSP 1 Score: 223.0 bits (567), Expect = 3.200e-54
Identity = 125/287 (43.55%), Postives = 181/287 (63.07%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIE-EGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFV 287
            MADAV   +++M+P LEDLQ   +FT +EVR I  KRRDFE+ ++R   RK D LRYI +ELNL+ LRR RK + GL+K ++SDH+G Q VH IF+RAL K +GD++LWLQ++ +C +T S K  S+    ALQL PR   +WI AA++EF  + +  +ARVL+QR +R+N   S  LW +YF+LE LYV KLR RR  LG++ E TK ++             + +  ++GE              E     +S + +L GA+P++V+ +AI+A P++   RLAF+
Sbjct:    1 MADAVQYVMEKMIPELEDLQHLQIFTKDEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRMGLTKLSLSDHSGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLFTNALQLHPRNEAIWIEAAAWEFATNLNVDSARVLLQRSIRIN-PHSQKLWLEYFRLEFLYVQKLRTRREVLGLDTEKTKPKE-----------LSLDIAPVDGEDAPIDATTDSESSTE-----KSRQEILQGAIPKIVFRNAIQAIPQNAAFRLAFI 270          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: XP_008865507.1 (hypothetical protein H310_03430 [Aphanomyces invadans] >ETW05730.1 hypothetical protein H310_03430 [Aphanomyces invadans])

HSP 1 Score: 222.6 bits (566), Expect = 4.200e-54
Identity = 128/286 (44.76%), Postives = 171/286 (59.79%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFV 287
            MADAV   +++M+P LEDLQ   +FT EEVR I  KRRDFE+ ++R   RK D LRYI +ELNL+ LRR RK + GL K + SDH G Q VH IF+RAL K +GD++LWLQ++ +C +T S K  S+    ALQL PR   LWI AAS+EF  + +  +ARVLMQR +R+N   S  LW +YF+LE LYV KLR RR  LG++  T K               + +  ++GE              ++    +S   +L GA+P++VY +A  A P D   RL FV
Sbjct:    1 MADAVQYVMEKMIPELEDLQQLQIFTKEEVRQIVQKRRDFEYTMKRTPLRKVDCLRYIEYELNLDALRRQRKKRLGLQKQSSSDHTGMQRVHNIFDRALMKHRGDVDLWLQHIAFCKNTGSSKLLSKLFTNALQLHPRNETLWIEAASWEFSTNLNVDSARVLMQRSIRMN-PHSKKLWLEYFRLEFLYVQKLRTRREVLGLDADTTK----------PLELSLDIAPVKGE--GAAQVDAIAESAKESAVDKSRHEILQGAIPKIVYRNASHAIPNDAAFRLQFV 273          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: XP_012195293.1 (hypothetical protein SPRG_19098 [Saprolegnia parasitica CBS 223.65] >KDO34278.1 hypothetical protein SPRG_19098 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 222.6 bits (566), Expect = 4.200e-54
Identity = 125/287 (43.55%), Postives = 175/287 (60.98%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVE 288
            MAD V   +++M+P LEDLQ   +F+ +E+R I  KRRDFE+ ++R+  RK D LRYI +ELNL+ LRR RK + GL K+T+SDHA    VH IFERA+ K +GD++LWLQ++ YC + +S K  S+    ALQL PR   +WI AAS+EF  + +  +ARVLMQR +R+N   S  LW +YF+LE LYV KLR RR  LG++   +K +             + +  L+ E              E+     S +A+L  A+P++VY +AI+A P D   RL FVE
Sbjct:    1 MADQVNYNMEKMIPELEDLQQLQIFSKDEIRQIVQKRRDFEYTMKRQPLRKVDCLRYIEYELNLDALRRQRKKRMGLKKTTISDHAPVARVHNIFERAVNKHKGDIDLWLQHIAYCKNNASRKMMSKLFTSALQLHPRNEAIWIEAASWEFNTNLNMDSARVLMQRSIRIN-PHSQRLWAEYFRLEFLYVQKLRARRELLGLDAPVEKPK----------ELSLDIETLDEEANLATDEAPALSAMEE-----SRQAILNAAIPKIVYQNAIQAIPSDASFRLQFVE 271          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: XP_008611921.1 (hypothetical protein SDRG_07843 [Saprolegnia diclina VS20] >EQC34515.1 hypothetical protein SDRG_07843 [Saprolegnia diclina VS20])

HSP 1 Score: 221.9 bits (564), Expect = 7.100e-54
Identity = 123/287 (42.86%), Postives = 175/287 (60.98%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVE 288
            MAD V   +++M+P LEDLQ   +F+ +E+R I  KRRDFE+ ++R+  RK D LRYI +ELNL+ LRR RK + GL K+T+SDHA    VH IFERA+ K +GD++LWLQ++ YC + +S K  S+    ALQL PR   +WI AAS+EF  + +  +ARVLMQR +R+N   S  LW +YF+LE LYV KLR RR  LG++   +K +             + +  L+ E               ++ R    +A+L  A+P++V+ +AI+A P D   RL FVE
Sbjct:    1 MADQVNYNMEKMIPELEDLQQLQIFSKDEIRQIVQKRRDFEYTMKRQPLRKVDCLRYIEYELNLDALRRQRKKRMGLKKTTISDHAPVARVHNIFERAINKHKGDIDLWLQHIAYCKNNASRKMMSKLFTSALQLHPRNEAIWIEAASWEFNTNLNMDSARVLMQRSIRIN-PHSQRLWAEYFRLEFLYVQKLRARRELLGLDAPVEKPK----------ELSLEIETLDEEANLANNDEVPAVSAMEESR----QAILNAAIPKIVFQNAIQAIPNDASFRLKFVE 272          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: OQS02563.1 (delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial-like [Thraustotheca clavata])

HSP 1 Score: 221.1 bits (562), Expect = 1.200e-53
Identity = 135/287 (47.04%), Postives = 185/287 (64.46%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVE 288
            MAD V   +++M+P LEDLQ   +FT +E+R I  KRRDFE+ ++R+  RK D LRYI +ELNL+ LRR RK + GL K+T+SDHA    VH IFERAL K +GD++LWLQ++ +C +  S K  S+    ALQ+ PR   +WI AAS+EF  + +  +ARVLMQR +R+N   S  LWT+YF+LE LYV KLR RR  LG++   +K +                  L+ E   XXXXXXXXXX  +  ++R  + +L GA+P+++Y +AIKA P D+  RL FVE
Sbjct:  525 MADQVNYIMEKMIPELEDLQELQIFTKDEIRQIVQKRRDFEYTMKRQPLRKVDCLRYIEYELNLDALRRQRKKRMGLKKTTLSDHAPITRVHNIFERALMKHKGDIDLWLQHIAFCKNNGSRKLMSKLFTSALQMHPRNEAIWIEAASWEFTSNLNIDSARVLMQRSIRIN-PHSQRLWTEYFRLEFLYVQKLRVRREVLGLDAPAEKPKEL---------------SLDIEPLAXXXXXXXXXXLSEMEQSR--QEILNGAIPKIIYQNAIKAIPSDVQFRLKFVE 793          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: ORX93777.1 (hypothetical protein K493DRAFT_284390 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 206.5 bits (524), Expect = 3.100e-49
Identity = 147/335 (43.88%), Postives = 209/335 (62.39%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGL-SKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXE-DDPRARSVR----AVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEELGGQQQQSETEGEGGREE--RSEGAFEDLVQEILGGIE 328
            MAD V   L+ M+P LEDL+ + +F  EE+R+I  KR +FE+ L+RR+ +K D+LRYI +ELNLE LR+ RK +  +  K +VSD+AG + V+FIFERAL KF+GD+ LWLQ++D+      +K  S+  ARA+QL P    LWI AAS+EF ++ +  AAR+L+QRGLRLN  ES  LW +Y +LE++Y+ K+R RR  LGI    KK+Q      XXXXXXX         XXXXXXXX         D   ++++    A L+GAV  +VY +AIK+ P DLD R  F+E  + + G +   ET  E  +++    E A    +++ L G++
Sbjct:    1 MADTVQYHLENMIPELEDLEKKKIFNKEEIRSIVKKRTNFEYALKRRSPKKIDYLRYIEYELNLENLRKKRKARLDIKGKPSVSDYAGPRRVNFIFERALLKFKGDVPLWLQWVDFAKRNKMNKLLSKIFARAIQLHPAKPSLWIMAASWEFEDNLNTTAARILLQRGLRLN-PESQELWLEYVRLELVYMAKIRERRRILGI---LKKDQAKPEVEXXXXXXXXXXXXXXXXXXXXXXXXEPKREITISDGLIQTLKAENNAFLSGAVALIVYQNAIKSIPNDLDFRRKFLEVFQTIPGTESGQETIYESIKDDFPHDESARALYIEKNLAGVD 331          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: OQR85453.1 (U3 small nucleolar RNA-associated protein 6 [Achlya hypogyna])

HSP 1 Score: 206.1 bits (523), Expect = 4.100e-49
Identity = 119/286 (41.61%), Postives = 169/286 (59.09%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFV 287
            MAD V   +++M+P LE+LQ   +FT +E+R I  KRRDFE+ ++R+  RK D LRYI +E+NL+ LRR RK + GL K+T+SDHA    +H IFERAL K +GD++LWLQ++ YC ST S K        ALQ+ PR   +WI AAS+EF    +  +ARVLMQR +R+N   S  LW +YF+LE LYV KLR RR  LGI+   +  +             + +  L  E                  + +S + +L GA+P++V+ +A++A P D   RL F+
Sbjct:    1 MADQVNYKMEKMIPELEELQALQIFTKDEIRQIVQKRRDFEYTMKRQPLRKVDCLRYIEYEINLDALRRQRKKRMGLKKTTLSDHAPVTRIHNIFERALMKHKGDMDLWLQHIAYCKSTGSRK------LIALQMHPRNEAIWIEAASWEFTASLNMDSARVLMQRSIRIN-PHSQRLWIEYFRLEFLYVQKLRARREVLGIDAPAEAPK----------ELSLEIEPLAEEAEAPEPQLSL--------QEQSRQEILNGAIPKIVFANAVQAIPGDAAFRLQFL 261          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: CBN75272.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 202.6 bits (514), Expect = 4.500e-48
Identity = 144/396 (36.36%), Postives = 190/396 (47.98%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNK---------------AGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEE----GTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXE----------DDPRARSV-----RAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEELGGQQQQSETEGEGGREERSEGAFEDLVQEILGGIEEAFGVAEAAW----------ARAKHALTRRGGQVG 353
            MAD+V  ALDRM+  LEDL+ RG+F+  EVRAI ++R+ FE++LRR  AR+ DF+RY+ +ELNLE LR LR  +                   K+  +D    +LV +IF+RA+ KF GD+++WL Y+D+       KA  R  ARALQL PR  GLWI+AAS+EFF   +  +AR LMQRGLR+N   +  LW QYF+LE  YV KL GRR  LG+E          QG            + +P LE E                         D  R   V     R    GAVP  V+ +A+KA P D+  R  F+                      E       ++ Q IL  IE  F  +  AW          A A  A  R GG++G
Sbjct:    1 MADSVQYALDRMVVDLEDLRCRGIFSEAEVRAIVSRRKGFEYMLRRHEARRLDFMRYVEYELNLESLRALRTRRIEGGXXXXXXXXXXXXXXGKAATADFCCVRLVRWIFDRAVMKFPGDVDIWLHYIDFAARQGQSKALGRLFARALQLHPRNPGLWIKAASWEFFNGGNASSARSLMQRGLRIN-PGARNLWLQYFRLEFSYVEKLMGRREILGLEAERGGAGDNAQGSDDNDDDGGRRGMDIPELEAEAGQSGGPSFKAVRKAAGAEGALGGGDGARPAPVMNDTARRFYKGAVPMAVFRAAVKAIPADVGFRAGFLRCC------------------AEDFPVLSAEVAQSILTSIERDFPESCEAWEVRASYPQLAAEAAAAAGRDGGRLG 377          
BLAST of NO08G00020 vs. NCBI_GenBank
Match: XP_024579671.1 (u3 small nucleolar rna-associated protein 6 [Plasmopara halstedii] >CEG43302.1 u3 small nucleolar rna-associated protein 6 [Plasmopara halstedii])

HSP 1 Score: 201.1 bits (510), Expect = 1.300e-47
Identity = 119/293 (40.61%), Postives = 170/293 (58.02%), Query Frame = 0
Query:    1 MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTARKSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALRKFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFEFFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVALGIEEGTKKEQGXXXXXXXXXXXXIHVPRLEGEXXXXXXXXXXXXXXEDDPRARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEELG 294
            MAD V   +++M+P LEDL+ R +FT  E+R I  KRR FE+ L+R   RK D +RYI +EL L+ LR +RK +  L K T+ D AG + VH IF+R L K +G +ELWLQY+ +C    S +  S   +RALQ  PR A LWI AAS+EF  + +  +ARVLMQR +RLN +E+  LW +YF+LE+LYV KL  RR  L +++ T+K               + + +L  E              E   +  + + +L GA+ ++VY +AI A P D+  RL FV+  +  G
Sbjct:    1 MADTVQITMEKMIPELEDLEARKIFTKHEIRQIVDKRRSFEYSLKRVPLRKIDAMRYIEYELQLDALRAMRKERLNLVKVTLGDTAGVKRVHNIFDRVLFKHRGSIELWLQYVAFCKREGSSRVLSAVFSRALQSNPRCAELWIEAASYEFGVNLNVDSARVLMQRAIRLN-KENRKLWIEYFRLELLYVQKLTMRRQVLRLDDKTEKS-------LDEDGSTVLIDQLPEE----QDDQVEKYSEEMTTKMNARKLILQGAIAKIVYTNAISAIPNDVSFRLEFVKIRDFFG 281          
The following BLAST results are available for this feature:
BLAST of NO08G00020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26483.11.400e-20658.20RNA-processing protein, HAT helix [Nannochloropsis... [more]
XP_009823850.13.200e-5443.55hypothetical protein H257_02061 [Aphanomyces astac... [more]
XP_008865507.14.200e-5444.76hypothetical protein H310_03430 [Aphanomyces invad... [more]
XP_012195293.14.200e-5443.55hypothetical protein SPRG_19098 [Saprolegnia paras... [more]
XP_008611921.17.100e-5442.86hypothetical protein SDRG_07843 [Saprolegnia dicli... [more]
OQS02563.11.200e-5347.04delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
ORX93777.13.100e-4943.88hypothetical protein K493DRAFT_284390 [Basidiobolu... [more]
OQR85453.14.100e-4941.61U3 small nucleolar RNA-associated protein 6 [Achly... [more]
CBN75272.14.500e-4836.36conserved unknown protein [Ectocarpus siliculosus][more]
XP_024579671.11.300e-4740.61u3 small nucleolar rna-associated protein 6 [Plasm... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009075NSK009075Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00020.1NO08G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100045g10gene4053Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00020.1NO08G00020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00020 ID=NO08G00020|Name=NO08G00020|organism=Nannochloropsis oceanica|type=gene|length=5437bp
GCGGTAAGCAGGAGGTCACGATGAAACCGACGCTGGGCCGTTGCGCGGAG
GGTTTAAATTGCGAAATCGACACGGTGCGATTCAGGGGCAAATGTCAGGC
TTTTGAAGCGATTTGAAAGGTGTTAGTGCCAATGCACACATGAATGCATA
TAACATGATGAACAAGCTGAGTGGTGGAAAAAGTAGCAGGATCGGCCAAA
ATTAATGGGTTGTCCAGCGAGGAGGCTTGCTTGCACAACATGATGTTTTC
TCTGGCGCGCGAGCCGCAGCCCTGCGACGAAAGTCCAAAGGATGCTACCG
TCCAGGAAGCAGATCGCAAGGCTATTAAGTCTGTGTGCTCCAAGATTGTT
GAAGTAAATCAAAGCCGCTTCAAACTTATCCAAACATCAACCAAATCACA
CTCATGTTTCTATCGAGGAGACATTATATCGTCTCTATTGACCCGCTCTT
TTTTCTTTTTTCATGCCTTTCCTCTGACGCTTTTCGGTCAAGTCGTCGTG
GGACTTTTTGATCAAGGCGTCGTGGGACTGAGCTCCTCCAGGACTGGCCC
CAGGTGTGCTGTGAAAATGTGCGTGTATAAGGGGGGTTGAAGTAACCAGT
GAGAACTTCGCACAAGACGCCGTTTGATTTTCCTCCTGCTTCCCCCTTTG
CCCCTTGTTTTCTCTAAATCGACTTCCACCTTCCTGCTCAAATCCTAGAA
CCTCATTTGTCGACGACATACACTACTATTACCACTCTCCTGCCTCTCAT
TCCTGCACCATCCTTCGCGTACTCTTCCCTCTCCCTCTCTCCCCCATCTT
CTCCTCGTAACATCACGTACCGATCGCATCCGGCGCCGTCATGGACCGCC
GCTTTTCCTTGAACGCCTCCCGACTCGCTCGCCGGGCAATGAAAGAGGCC
GTGCCACACGCCCACAACACAGTGTCCCGCGCCTCGAGCCGTCTAGCCTC
GCACGAAGACGACGATGCCGTCTCTCCTCCTCCAGCCCCTTCCTCCCCTT
CCCCTCCACCGCTTTGTGCTTTCAAAACCAAGGCTGACCAATGCATCAAC
ACGCCCATGCTCCCCGCCAAAATATCCCCCAGCCCCCCTGACCGCCGCTT
GGATCCCTCCTCCCTCACCACCAAATACCGCTGCCCGTCCGCCACGATGT
CCTCCTTTCCCTTCAAGAGCACTGTCACCTTTCCCTTCTCTCCACTCAAT
GCCTGAGCCACCCTCATCACGTCCCTGGGTTGCGGGGCCTTGCGCGAGGG
GACAGCATCAGCTATCGAGGCGCCCTCGAGCCCTGCCTGCAGTCTGGCAA
ACTCAATCAGATTGGGCGTAACCACCACCCCGCCTACTTTTCCTCCTCCT
TCGCCTCCTTCGCCTCCTCCTGCAGATGGATAGTCGTGCAAAACGTCGGG
GGCGTGCGCAACGAGCCAGAGCCCGTCGGCGTCAATCACGACGGGCAAGG
CCTGGTGTTTGGCTTCGAGCAAAATGCGGTGCGTCGCCTCCATTACCAGA
GGGTCACGACCCAGCCCGGGCCCCACCACCAGCACGTGCAGCTTGGGGAA
AAATGACGTCACTTGCTCTACAAAGCGGGTCACAAGAGCTTCCTCTTCCT
CCTCTCTGCCTCTGCCGACAGTGCGGTTGAACAGCCGCAAGACTGAGCTT
CCTTTTCCTCCTCCTCCTTCCTCTGTGGCACCACCGGTCCTCCTTCCGAC
CCCCAGGGCCTTGGCAGAGTAGACCGACGTCACCATAAGCTCCGGACTAT
ACCCCTTGATAGGGCCTGCGGCTTCGTCTGCGGTGAAGATATAGCACAGG
TCGCCGCCCAACTTGAGGCTGGCCATGCCCGCGTAGAAGGGCGCACCGGT
AAAGTCTTGTGAGCCTCCTAGGATACCCACCTTCCCCATTTGTCCCTTAC
GGGCCGTGTCTGTTAATGGAGGGATCAGGCGTTTGATCATGTCCAAGTCG
GCTGCGGCGGTAGCGTGGTTGAGGCACGTGGACATAGTGGCCTCCGACGA
GGACGAGGACGAGGAAGCGGCAGCAAGAGGCATGGCAGCCGCAGACAAGC
CTTGACCAGTTGTTCCACCAGCACTTCCGCTGGCCTTGAAGGAGGAGGAG
CCGAAGAATGTGGTGAAGGCCGTGAGTGCCAAAGGTAGAAGGCGCAAGGG
GCCACCGCCGCGCTGCTTGAGGTGCTGGCGGCGAATGTGATAATAATGGT
GCTGCTGTTGGAGGAGAAAGGCAGGAGGAAGGCAGGAGGAGGGGGGGGCG
GGCATAGACTGGGCAAAAGTAACAAGCTGCAGGCTGGGTGCGTTCTGTTT
TTGGTGTGTTGTGATTGCTATGTGGGACGAGGTGTGAAGAGGGCACAAGG
TGGAACAGAACAAGCCATGATGATTGTCGTGCCTGGCTTGGCTTAGTTTG
GTGATACTCTTGTGCTCCGAACAATGCATGCATAATGCACCCACTTTTCT
TGTAAATACACGCCACTATTACATTCACGACTGATATAGTGCTTGTCATT
CAGGCTCGCGGTGCTGTCCGGGCCACGGAGGCTTGGAGTCCATCGAAATC
ACAGTCAAGCTTAGGCCAAGCATCCCCCTCATCCCTAATCTAGTTAAGCG
TAAGCCAGCAACACCATGGCTGATGCCGTCTACCAAGCATTGGACCGCAT
GCTCCCGGCCCTGGAAGACTTGCAGGTTCGGGGTCTTTTCACTGCGgtaa
gttttttgtggatacgattgattcactgactgattgattgattaattggt
tgattcttgcgtgatgagtggttgcgttcttacctccccacgctctctaa
gaaatccgcgcagatactttgcttccttctcatatcaaagccttgcctgt
caaccactgagccctcggcataagagaaaagaggctactttcttgaacgg
cggctatctgcccttgtatttgctccgccgagcaactttcaccaccatct
tctatctgcgcccccctccactccattcagccccgctaccccccacgccc
cctcatgcctcacaacaactacctctcaccaatttatacattctatccaa
tcccactaaatttcttctttatttccaattatacagGAGGAAGTCCGTGC
CATTGCTGCCAAACGGCGGGACTTTGAGTTCCTGCTGCGTCGCCGCACGG
CCCGCAAAAGCGATTTTTTGCGTTACATCACCCACGAGCTCAATCTCGAA
GAACTCCGGCGCCTGCGCAAGAATAAGGCCGGCTTGAGCAAGAGCACTGT
CAGCGACCACGCCGGAAAGCAGTTAGTCCACTTCATATTTGAACGAGCCC
TGCGCAAGTTCCAAGGCGACCTGGAGCTCTGGCTCCAATACCTGGATTAT
TGCTGCTCCACCTCCTCCCACAAAGCCCACTCCCGCGCCCTCGCTCGAGC
ACTCCAACTCTTCCCCCGTACGGCGGGACTCTGGATACGTGCTGCCTCCT
TTGAATTTTTTGAGCATTCCTCCCCGCCCGCCGCGCGTGTCTTGATGCAG
CGCGGGTTGCGGCTGAACGGGCAGGAATCGGCCTTGCTGTGGACCCAGTA
CTTCAAGCTGGAGGTACTTTACGTCAATAAATTGAGAGGGAGGCGGGTTG
CATTGGGCATAGAGGAGGGTACGAAGAAGGAGCAGGGAGAGGGGGGGGGG
GAAGGAGAGGAAGAGAGCGAAGGGATCCATGTCCCACGCTTGGAGGGTGA
GGACGATGACACTGAGGAGGAAGCGAAGGAGGAAAAAGGGAACGAAGATG
ACCCACGCGCTCGAAGTGTAAGGGCTGTGTTAGCGGGAGCGGTTCCTCGG
ATGGTGTACTTGTCGGCCATCAAAGCCCGGCCACGGGACTTGGATATGCG
ACTTGCTTTCGTTGAGACCCTTGAAGAGCTGGGGGGACAACAGCAACAGA
GTGAGACAGAGGGGGAGGGGGGGAGGGAGGAAAGGAGCGAGGGGGCCTTT
GAAGATTTAGTGCAAGAGATTTTGGGAGGTATTGAGGAGGCATTCGGGGT
GGCGGAGGCGGCCTGGGCCCGCGCGAAGCATGCCCTTACTAGGCGTGGAG
GGCAGGTGGGAGGGGAGGTGGAAGTGAGGGCGACAACGAACAAAAGGAAG
ACGAATGTGCGGCGCAACAGCAGCAGCAGCAGCAGCAAGAAGCGGCGGTA
TTCATCAAGCTTGACAGCGACTTGGGTTGACGACGAGAAGGCGGTGACGG
GCTGGCGGGAGGGCCTTGAGGGCGGGGCCCGTGAGTGCATGGCCGTGCTG
GACACAACACTGGCTGCCGCTGCCGACCTGGACCGAAACGCGGAGGAGGA
CAAAAATGGGAAGAGGTACGACCTATTGAACAAGATATGGCAGTATTATT
TGCGTGGACTGCTGGAGCTGTTGCACGCCCCTGGCTCTGTCCTTCGCGCC
GCGTTTGCCCGGAGGGAGGTAGCGTTGAGCGGGGAGGGAGGAAGGGAGGG
AGAGGTGGCAGGCGGCCTTACCCTCGAGCCAGGAATGTACTTGATATGGG
CCTCGCTGTGGGTGGCCCCTTCGGTGCTTTCATCTCCGCTGGCACACCAC
GTTGAGGAGGATGGGAAGGAGGAAGGGAACGTGCAGGAAGCTCGACGTGT
TTTGGACAAGGCCGTAAAGGCGCACCCTTTGCATGCCCGCCTTTGGGAGG
CGAGGCTGCGGGCCGAGGCATGGGGAGAAGGGGGGAGGGTGGGCGACGTG
TTCACCAAAGCCCGACAGGCATTGGGCCCTACAGCAGGGATCGACGAACT
GGGGGAGGGAAGAGGGAGCGAGGAGGAGGAAGGGGAGGCGCGGAGAATAG
CGGTGGCTGGGTGTTGGTGGGTCTATTTGGACTGGCTGATGCTGGTTGGC
GGGGAGGGTAAGAGAAGGAAGAGTGAGAATACCACCAGTGGTAGCAGTGA
GAGTGACAGCGATTCGGAGGCGGAGGAAGGAGAGAAAGACGGGGTGGAGT
GGCAGGAAGAGGGGAAAAGGGCGGTATCGCCCGAGGTCGTTAAGGCGCTT
GAGCACGCCTTGGTGAGCACGCGGGGTCCGGGTCGTGTGGCTCTCTGTCG
GTTGTGGCATCGGTGCTTGGGTCGAAGAGGGTTGCAACAAGCCATGACTC
ACATGGGGGATGGGAGGGCGGAGGAGCGGGAAGATATGGCAGCACTGTGT
TTGGAAGCCTTAAACGACGGGAAGGAGGAAGCGGGGCTCACGGGGGCGTG
GTTCGAGGCAGCTCTAGCAGTGTGTGGGAAGGCGGAGACAGAGGAGGCAG
CGGCCCTGTGGGAGGCGTATGAGATTTTTGAAAGAGGGCAAGGTCGACAC
CAGGCGGCTAACAACGTGAGGTGGCGGCGGGGAAAGGCGACAGGAGAGAA
GTAACGAGGGCATGAGGGACAACAAATGATTGTCGTTAGTATGTACATGA
ATGGAGCTAGAACGGCGATGTGCCGCAACGAATTGAG
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protein sequence of NO08G00020.1

>NO08G00020.1-protein ID=NO08G00020.1-protein|Name=NO08G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=783bp
MADAVYQALDRMLPALEDLQVRGLFTAEEVRAIAAKRRDFEFLLRRRTAR
KSDFLRYITHELNLEELRRLRKNKAGLSKSTVSDHAGKQLVHFIFERALR
KFQGDLELWLQYLDYCCSTSSHKAHSRALARALQLFPRTAGLWIRAASFE
FFEHSSPPAARVLMQRGLRLNGQESALLWTQYFKLEVLYVNKLRGRRVAL
GIEEGTKKEQGEGGGEGEEESEGIHVPRLEGEDDDTEEEAKEEKGNEDDP
RARSVRAVLAGAVPRMVYLSAIKARPRDLDMRLAFVETLEELGGQQQQSE
TEGEGGREERSEGAFEDLVQEILGGIEEAFGVAEAAWARAKHALTRRGGQ
VGGEVEVRATTNKRKTNVRRNSSSSSSKKRRYSSSLTATWVDDEKAVTGW
REGLEGGARECMAVLDTTLAAAADLDRNAEEDKNGKRYDLLNKIWQYYLR
GLLELLHAPGSVLRAAFARREVALSGEGGREGEVAGGLTLEPGMYLIWAS
LWVAPSVLSSPLAHHVEEDGKEEGNVQEARRVLDKAVKAHPLHARLWEAR
LRAEAWGEGGRVGDVFTKARQALGPTAGIDELGEGRGSEEEEGEARRIAV
AGCWWVYLDWLMLVGGEGKRRKSENTTSGSSESDSDSEAEEGEKDGVEWQ
EEGKRAVSPEVVKALEHALVSTRGPGRVALCRLWHRCLGRRGLQQAMTHM
GDGRAEEREDMAALCLEALNDGKEEAGLTGAWFEAALAVCGKAETEEAAA
LWEAYEIFERGQGRHQAANNVRWRRGKATGEK*
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Synonyms
Publications