NO08G00010, NO08G00010 (gene) Nannochloropsis oceanica

Overview
NameNO08G00010
Unique NameNO08G00010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3533
Alignment locationchr8:435..3967 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:435..3967 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G00010 vs. NCBI_GenBank
Match: EWM26486.1 (hypothetical protein Naga_100045g9 [Nannochloropsis gaditana])

HSP 1 Score: 306.6 bits (784), Expect = 3.100e-79
Identity = 243/758 (32.06%), Postives = 353/758 (46.57%), Query Frame = 0 
Query:  345 AGASCIYCVFKGPTIPYLLSMIAMLFKLWMRKFRRRRGRLPQQAAKDTSAVGRTEAGRLPDGLDH---MRMFSFRRRSEDTYDRNXXXXXXXXXXXXXXXXXXXXXXXXXKLRGERQHALLKILRSMAAQRRAVDAMAMVDIYTKSWRILRQLYTLERDESTPWSVREGKLRHLWPIFDVHWQALTAWTNGKVPREP---SLVLCCTHIGSLKMAHLYSRLARALYVKNNTGTDYKC--PRPNATRQDVEDKIHWRESADLAALRPHVLARYWRECGLARQQMWIQGIWAVIVSHPTIQTSVTGYMRSWKPRLRRTQLDHRQVPIWKTLDSGQSDIQVLHAIELRSLESQIMASGA---GQGGKVTLFSVDMRPQGVLCPSERPYLLNCWLDGATEAKLAMAAMVPIRVAAQRSLLEIEPGIGMEERRMRARLRSLVLAFLTDHEMIILETAVAGVMSHFTGIADQRKLFLFSRQAVPLAVALEQARRRGAGVTEHKERKKGNSRTQVLWPNILELRLDLHHRPPSVDVITRHSHLAAVIMAQHQCHAPKKKTTNTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRVEGGVHVLFTPASLPSIVEYLGVTARNIAQTSLPTLLSARMPIRTQELLASAPPDFQSAVPCPPAHLGAQQRVVRSHPPVGWTPSLTFRRALR-AGLLYSLSLVAKYGIPAYVFTIWAWHVYMRWIKDIVANDRAMTSSNPTPPREEAPTIDDIINNLPDI 1091
            AG   IY    G   PY   + A+L  L   K R+ R +  QQ   DT          + D LDH     MF    RS +  DR                           LR ++Q +LL +LR  AAQR A +A AMV  Y +SW++LR LY  ER+E+  W+VR+ +L+  W  FD  ++ALTAW NG+   EP   S  L  TH G   +A LYSRLARAL         YKC  P  +A  +DV  K+ W+ESA+LAALR  +L RYWR+CG+ARQ+MW +G+WAV++S   I+ S    ++ W P+ R        VP+  ++    + + V+HAIE+R+L   + A+     G   +V LF V +   GV+  S    LL  WLD +T  KLA      +++  +R LLE+EP +   ER +R R+R+  L FLT+ ++  LE AV          +++ K  L S Q +P AVA E  RRR    T   +   G + T   WP  LE+R++LH RPP    +  H  L A ++         K   + +                                      G V+    V      + S V ++  ++  +   SLP LL            +S+PP             G++ R +       W+     RRA R   LL +L ++  YGIPAYVF +W WH+ M+W   I  ++R            +APT+DD++++LP++
Sbjct:  112 AGVIRIYITCGGFWNPYSSFVFAVLTFLGASKIRKCR-KQTQQGIMDT---------MVGDDLDHALGTHMFEPESRSAEP-DRVVEETLAYDEVRHLEEQEQKRRHALETLRNKQQRSLLIVLRLAAAQRAAAEAQAMVRTYWRSWQLLRSLYVEERNEAQAWNVRKWRLKQWWYQFDTRFEALTAWVNGRSQPEPRGFSTHLDSTHSGGDSLACLYSRLARAL-----GPCKYKCMWPSLDAQIEDVHRKLQWKESAELAALRSEILCRYWRDCGVARQRMWGRGLWAVLMSSGAIRHSTPPLLQYWTPQPREELRLRSLVPV--SVKKQYASVDVVHAIEIRAL-GHVTATTTLKWGDPMRVRLFGVTVGAGGVMALSPTLDLLRDWLDRSTRDKLAKVVSASVKLLEERRLLEVEPVLTTNERMLRRRVRARTLRFLTEQDLNALEMAVVEAREILPMESERWKRLLLSCQTLPSAVAQECVRRRCGRRTGVWKGMGGGASTP--WPEALEIRMELHGRPPPRQALACHVRLRARLLLLQYSSQENKMIKSVATDIIGPDKGLRNQRDDVRKNSAI---------------GSVKLDTGVSSGAIYITSKVHHVPESSTALGYASLPHLL------HRHGTASSSPP-------------GSRHRTLSPSLLSHWS-----RRARRKTRLLLALYIIGAYGIPAYVFCVWIWHLCMQWTNVIQVDERDAVLIE-RGKGSKAPTLDDVLHSLPEV 808
The following BLAST results are available for this feature:
BLAST of NO08G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26486.13.100e-7932.06hypothetical protein Naga_100045g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009077NSK009077Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00010.1NO08G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100045g9gene4054Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00010.1NO08G00010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00010 ID=NO08G00010|Name=NO08G00010|organism=Nannochloropsis oceanica|type=gene|length=3533bp
CGAGACTGTAAAAGTAAGGTCAATATCGAACTCACATAAAACTTCCACCG
GACAAACCAATTGAACCTCCTCTGCAGGCCCCCCTCCTTCTCATCACCAT
CTGTGCCCATGCCTTGCACAACCAAACCCCGGGGTGGATTCTGTATCTTA
ATCAAGATCGTGGTCCTACTCTTTTTCCTCAGTGATTGTGGCGACCACCG
CCAAAAGGAGCAACAATGGCACGCAAGTAAGCGTAAAATGCGGCAACAAC
ATGAGCAACAAAAGCAAGGAGAGCGGCAGAATACCATCGTATCCGGTGTC
CATGCAAATAGTAACACCGTCATTACCGCCCCGGCCACATCTGGCCGCTG
TGATGTTTTCAACGATCTGGCAGTGTCTCCGCCGCATGAGTGTCCTTCGC
TCCCAGCATTGGGCGGCCTTTTTTGGTACGAAGGGATCGACTGGCAGACC
TTTGATCCTTTGGTGCTATTTCTACGAGATTGGATCGCCTTTCTACGTGG
CGCGATGCTGTCCTTTCTTTGGCCCGAGACGGAGATGGCTCTGGCGGGTA
CGGCAACGGTAGGCGGTGCCCACAAGTTCATTCAGGAAGAGACTTGTCTT
GTAGGCTTAAATGGCTCTTGGACATACATTTGGACCGTCTGGTGGCCAAA
GAATATTACCATTGCAAATATACCACGATGTTTGGATAACTGTGTGTCAC
CGTCTTCGCCAACATCAGCCCAAGTATATCGGTGCAACGATCCTCCGGTC
CACTACAAAGATCTGATCAAGCTTAAGCCGCTTTCCAGAGGAGCTGTTGA
AAGCAGTATCCTCACAATATCTTTCGGTAGTACCATAAGTAATAAAACGG
TACCACTATCCCCGGACAGCTCCCCTGCCATGCATCATCATTACGAGAAC
AACTTTTGGTTACTGCTGGGTCGCGGCCGGCGTTATCATGGCACAGCGTT
GAATTTTCTCGTAAAAGCATGGCTTCCCACGGGGGCTCGAGAATGGCTAG
AGGTGACAGAAGGGAGATATATAGATTGGGTGAGAAATTCAATGGAAACA
TGGGGAAGTAAAATAACAGAGATGGCGGAAAAGTTGGGGTGTTGGTCGTG
TCGCGCGCTAATAGGGGTGGGTATGTCTTTCTCCTTCAAAGCAGGCGCCT
CCTGTATATACTGCGTCTTCAAGGGACCCACTATACCCTATCTTTTGTCA
ATGATAGCAATGCTTTTTAAGTTGTGGATGAGAAAATTTCGGCGGCGCAG
GGGGCGGCTACCGCAACAAGCAGCTAAGGACACAAGCGCTGTAGGGAGGA
CAGAAGCAGGGAGATTGCCCGATGGTCTCGACCATATGCGAATGTTTAGC
TTTAGGCGTAGAAGTGAGGACACGTACGATAGAAATGATGAAAGTGATGC
TGCCTTTGCCGCCCGTGCCCAGAAAGAAGAGGAAGAAAGGCAACAGCTGC
GAGAGGAAGAGAAATTACGTGGCGAGCGCCAGCATGCACTTCTCAAGATA
CTACGTTCAATGGCAGCTCAGCGTCGTGCTGTCGATGCCATGGCCATGGT
TGACATCTATACAAAGAGCTGGCGAATATTACGTCAATTGTATACCCTGG
AGCGCGATGAGAGCACGCCGTGGAGCGTCAGGGAGGGAAAACTTAGGCAT
TTATGGCCCATCTTTGATGTGCATTGGCAAGCTTTGACAGCATGGACAAA
CGGGAAAGTTCCGCGCGAGCCCTCTCTTGTCCTCTGCTGCACTCACATTG
GAAGCTTAAAGATGGCACATCTGTACTCGAGGCTGGCTCGAGCCCTGTAT
GTGAAAAATAACACTGGTACTGATTACAAGTGTCCTCGACCAAATGCAAC
GCGTCAAGACGTCGAAGACAAGATACATTGGCGTGAATCTGCTGACCTGG
CTGCATTACGGCCTCACGTTTTAGCACGATACTGGCGTGAGTGTGGGCTT
GCACGTCAGCAGATGTGGATTCAGGGGATCTGGGCAGTAATAGTGAGTCA
CCCTACCATTCAAACCTCTGTCACTGGATACATGCGAAGTTGGAAACCAC
GACTCCGACGCACACAGCTCGATCACCGGCAGGTACCGATCTGGAAAACT
CTTGATTCAGGGCAGTCTGATATACAAGTTCTCCACGCAATTGAGCTACG
GTCCCTTGAGTCACAGATAATGGCGTCAGGAGCCGGACAGGGTGGAAAGG
TGACACTTTTTAGTGTGGACATGCGCCCACAGGGTGTTTTATGTCCGAGC
GAACGCCCGTACCTCTTAAATTGCTGGCTAGATGGGGCGACAGAAGCCAA
GCTAGCCATGGCGGCCATGGTACCTATACGTGTGGCAGCGCAACGGAGCC
TGTTGGAGATTGAACCGGGAATTGGAATGGAAGAGCGCAGGATGCGTGCA
CGCCTGCGATCGCTGGTGCTTGCCTTTTTAACCGACCACGAGATGATAAT
CTTGGAGACCGCTGTGGCTGGGGTCATGAGCCATTTTACAGGCATCGCCG
ATCAGAGGAAGCTATTTTTATTTTCGCGTCAGGCTGTGCCACTAGCCGTT
GCCTTAGAACAGGCACGACGTCGTGGAGCAGGCGTGACAGAGCATAAGGA
GCGCAAGAAGGGCAACTCAAGAACTCAAGTGCTGTGGCCTAATATTTTGG
AGCTTCGACTGGATTTGCACCATCGCCCTCCATCTGTCGACGTTATCACA
CGCCACTCGCACCTTGCTGCTGTTATAATGGCTCAGCACCAATGCCACGC
CCCCAAAAAGAAGACCACGAATACGAGCACACGAGCAGAAACCCAAACAG
GAGCTGAAGCAGGACCACAGTATGTAAAGCAGCTTGTAGAAAGTGAAGTG
AACGAAGGAATACGAAGCCATTTAAGGAGTAGACGGGAGGGAGGAAGGGT
GGAAGGGGGTGTACATGTGCTTTTTACACCAGCTTCTCTGCCCTCCATAG
TTGAATATCTTGGCGTCACCGCGCGTAACATCGCACAAACATCTCTCCCC
ACGCTGTTATCAGCTCGTATGCCAATAAGGACGCAAGAATTACTCGCTTC
TGCTCCTCCGGATTTTCAGAGTGCAGTCCCTTGTCCGCCTGCGCATTTAG
GGGCTCAGCAGCGCGTAGTTCGTTCCCATCCTCCGGTCGGATGGACCCCT
TCACTAACATTTCGTCGAGCTTTGAGAGCGGGACTATTATACTCTCTATC
TCTAGTGGCAAAGTACGGTATTCCAGCCTACGTATTCACGATTTGGGCTT
GGCATGTGTATATGCGGTGGATCAAAGACATCGTGGCCAATGACCGGGCC
ATGACGAGTTCAAACCCGACCCCGCCCAGAGAGGAGGCGCCAACAATCGA
TGATATTATTAATAATTTGCCAGATATCGATAGTATCAGGGTCACGAGTA
TGGACTATGGATAAAGAGGGTCGCATTTAGCTCTAAATCCTCCTTTGGGG
ATGGATGCTTGATGGGTGCTTGAAATTGATGCTGAGCTCTTCTCGACCAT
ACCAGAAAAACAAGAAATGCGCCTAAAAACGAA
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protein sequence of NO08G00010.1

>NO08G00010.1-protein ID=NO08G00010.1-protein|Name=NO08G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1102bp
MPCTTKPRGGFCILIKIVVLLFFLSDCGDHRQKEQQWHASKRKMRQQHEQ
QKQGERQNTIVSGVHANSNTVITAPATSGRCDVFNDLAVSPPHECPSLPA
LGGLFWYEGIDWQTFDPLVLFLRDWIAFLRGAMLSFLWPETEMALAGTAT
VGGAHKFIQEETCLVGLNGSWTYIWTVWWPKNITIANIPRCLDNCVSPSS
PTSAQVYRCNDPPVHYKDLIKLKPLSRGAVESSILTISFGSTISNKTVPL
SPDSSPAMHHHYENNFWLLLGRGRRYHGTALNFLVKAWLPTGAREWLEVT
EGRYIDWVRNSMETWGSKITEMAEKLGCWSCRALIGVGMSFSFKAGASCI
YCVFKGPTIPYLLSMIAMLFKLWMRKFRRRRGRLPQQAAKDTSAVGRTEA
GRLPDGLDHMRMFSFRRRSEDTYDRNDESDAAFAARAQKEEEERQQLREE
EKLRGERQHALLKILRSMAAQRRAVDAMAMVDIYTKSWRILRQLYTLERD
ESTPWSVREGKLRHLWPIFDVHWQALTAWTNGKVPREPSLVLCCTHIGSL
KMAHLYSRLARALYVKNNTGTDYKCPRPNATRQDVEDKIHWRESADLAAL
RPHVLARYWRECGLARQQMWIQGIWAVIVSHPTIQTSVTGYMRSWKPRLR
RTQLDHRQVPIWKTLDSGQSDIQVLHAIELRSLESQIMASGAGQGGKVTL
FSVDMRPQGVLCPSERPYLLNCWLDGATEAKLAMAAMVPIRVAAQRSLLE
IEPGIGMEERRMRARLRSLVLAFLTDHEMIILETAVAGVMSHFTGIADQR
KLFLFSRQAVPLAVALEQARRRGAGVTEHKERKKGNSRTQVLWPNILELR
LDLHHRPPSVDVITRHSHLAAVIMAQHQCHAPKKKTTNTSTRAETQTGAE
AGPQYVKQLVESEVNEGIRSHLRSRREGGRVEGGVHVLFTPASLPSIVEY
LGVTARNIAQTSLPTLLSARMPIRTQELLASAPPDFQSAVPCPPAHLGAQ
QRVVRSHPPVGWTPSLTFRRALRAGLLYSLSLVAKYGIPAYVFTIWAWHV
YMRWIKDIVANDRAMTSSNPTPPREEAPTIDDIINNLPDIDSIRVTSMDY
G*
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Synonyms
Publications