NO07G04560, NO07G04560 (gene) Nannochloropsis oceanica

Overview
NameNO07G04560
Unique NameNO07G04560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3450
Alignment locationchr7:1282280..1285729 +

Link to JBrowse

Properties
Property NameValue
DescriptionCoatomer subunit epsilon
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1282280..1285729 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR006822Coatomer_esu
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005198structural molecule activity
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006890retrograde vesicle-mediated transport, Golgi to ER
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005794Golgi apparatus
Homology
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_005855422.1 (coatomer subunit epsilon [Nannochloropsis gaditana CCMP526] >EKU20929.1 coatomer subunit epsilon [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 409.1 bits (1050), Expect = 1.300e-110
Identity = 223/303 (73.60%), Postives = 240/303 (79.21%), Query Frame = 0
Query:   26 MAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFASHIVHA 329
            MAEPDDLYTLRQEFYVGNFQ +                        A LGLKEYDV+  EVKEGGDTPIALQAVR  A YE+ PEQREAV+   Q  L + ATAS PSLQTMAA I+LKEG VK+ALRAVH G TLEQRALMTAIYLR+DRLDHAQ+QLK MQA+DEDATLTQMTGAWVDLAQGGTGYRDAQLLFQEL+AKYG+SALLLNGL         YEEADK+L Q LREDPDKSNADTL+NL+ATAQHLHKP ETVAKLLSQLQK AP HPYV  L TL+ AFDRLQAQFASHIV+A
Sbjct:    1 MAEPDDLYTLRQEFYVGNFQDS------------------------ARLGLKEYDVIFGEVKEGGDTPIALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQRALMTAIYLRMDRLDHAQKQLKLMQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGL---------YEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 270          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: CBJ26468.1 (Vesicle coat complex COPI, epsilon subunit [Ectocarpus siliculosus])

HSP 1 Score: 278.9 bits (712), Expect = 2.100e-71
Identity = 144/297 (48.48%), Postives = 211/297 (71.04%), Query Frame = 0
Query:   26 MAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323
            M+EPDDL+TLR  F++G++Q AI EGS LGR+   L  ER EF+YR++L L ++ +VL E+K+  D P ALQAVRL+A Y S PE RE V+ TL+  L D  + ++P++Q +AA ++  EG +KEA+R++  G+T+EQ A++  IYLR+DR+D A +Q++ +Q AD+DATLTQ+  AWV LAQGG  Y++A  +F ELI KY +S LLLN   VA +H G+Y+EA+  L++A+ +   +++ADTLVNL+   +HL KP   V + ++QL+   P HPYV  L+  ++AFDR+ A FA
Sbjct:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEIKD--DAPPALQAVRLMAQYLSNPESREIVIETLKMWLTDPGSCNNPTVQLLAAAVFTHEGDLKEAVRSIRNGVTMEQTAMLAQIYLRMDRVDLALKQVQVLQQADDDATLTQLVVAWVHLAQGGKRYQEAAYIFDELIDKYQASPLLLNSSAVAKMHMGEYQEAETILVEAISK--SQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFA 293          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: EWM26919.1 (coatomer subunit epsilon [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 3.300e-61
Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 0
Query:  187 MQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFASHIVHA 329
            MQA+DEDATLTQMTGAWVDLAQGGTGYRDAQLLFQEL+AKYG+SALLLNGLGV+L+HQG YEEADK+L Q LREDPDKSNADTL+NL+ATAQHLHKP ETVAKLLSQLQK AP HPYV  L TL+ AFDRLQAQFASHIV+A
Sbjct:    1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_009038577.1 (hypothetical protein AURANDRAFT_28840 [Aureococcus anophagefferens] >EGB06832.1 hypothetical protein AURANDRAFT_28840 [Aureococcus anophagefferens])

HSP 1 Score: 222.2 bits (565), Expect = 2.300e-54
Identity = 128/298 (42.95%), Postives = 188/298 (63.09%), Query Frame = 0
Query:   26 MAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVY-ESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323
            MAEPD+LYTLR  F++GNF  AI EG+ L R++  L  ER EFVYR+++GL +Y +V+ EV E  ++ + LQAV+LLA Y E     ++ V+ TL   L DAA+   P++Q +AA +Y KE  +KEA  A+  G T+EQ AL     L++ RLD AQ  LK++  ADEDATLTQ+   WV+LA GG  Y++A   F+ELI K+ ++  LLN L V  +H  +++EA+K L+QA  +  + ++ADTL+N+V    H+ K ++   +L  Q+    P HPY   +   +  FD L  ++A
Sbjct:    1 MAEPDELYTLRNRFWLGNFSMAIAEGNQLSRLSDVLAVERDEFVYRSYIGLGQYGLVIGEVNE--ESAMPLQAVKLLAQYLEDPASTKDMVIMTLGEWLGDAASKDHPTVQLVAALVYEKEDLMKEAFTAIRHGQTMEQLALWAQFCLKIHRLDLAQAHLKKLSDADEDATLTQLVSGWVNLATGGEKYKEAAYAFEELIDKFEATLSLLNSLAVCKMHLREWDEAEKLLLQA--QSKNVNDADTLINMVTCYAHMGKDEQ---RLQKQMYGQHPNHPYTLKMKKAEAEFDVLAKKYA 291          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: KPP60989.1 (coatomer subunit epsilon-like [Scleropages formosus])

HSP 1 Score: 221.1 bits (562), Expect = 5.100e-54
Identity = 123/299 (41.14%), Postives = 183/299 (61.20%), Query Frame = 0
Query:   23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQF 322
            A    E D+L+ ++  FY+G++Q  INE   +   +P+ E ER  F+YRA+L  ++Y VVL ++K   ++ + LQAVR+ A Y S   +R+A++A L   +  +  A++ +   MAA IY +E +   ALR +H G +LE  A+   + LRLDRLD A+++LK+MQ  DEDATLTQ+  AWV+LA GG   +DA  +FQE+  KY  + LLLNG     + Q ++EEA+  L +AL  D D S+A+TL+NL+   QHL KP E   + LSQ++    THP+       +  FDRL  Q+
Sbjct:   29 ASQQGEVDELFDVKNAFYIGSYQQCINEAQKVKPSSPEKEIERDTFLYRAYLAQRKYGVVLDDIKP--NSAVELQAVRMFAEYMSSEAKRDAIVADLDKKMTKSVDAANTTFLLMAAAIYFQEANTDAALRTLHQGDSLECMAMTIQVLLRLDRLDLARKELKKMQEQDEDATLTQLATAWVNLATGGEKLQDAYYIFQEMADKYSPTLLLLNGQAACHMAQNRWEEAEGVLQEAL--DKDSSHAETLINLIVLTQHLGKPPEVTNRYLSQMKDAHKTHPFTKDYFAKENEFDRLATQY 323          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_018586514.1 (PREDICTED: coatomer subunit epsilon [Scleropages formosus])

HSP 1 Score: 221.1 bits (562), Expect = 5.100e-54
Identity = 123/299 (41.14%), Postives = 183/299 (61.20%), Query Frame = 0
Query:   23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQF 322
            A    E D+L+ ++  FY+G++Q  INE   +   +P+ E ER  F+YRA+L  ++Y VVL ++K   ++ + LQAVR+ A Y S   +R+A++A L   +  +  A++ +   MAA IY +E +   ALR +H G +LE  A+   + LRLDRLD A+++LK+MQ  DEDATLTQ+  AWV+LA GG   +DA  +FQE+  KY  + LLLNG     + Q ++EEA+  L +AL  D D S+A+TL+NL+   QHL KP E   + LSQ++    THP+       +  FDRL  Q+
Sbjct:   18 ASQQGEVDELFDVKNAFYIGSYQQCINEAQKVKPSSPEKEIERDTFLYRAYLAQRKYGVVLDDIKP--NSAVELQAVRMFAEYMSSEAKRDAIVADLDKKMTKSVDAANTTFLLMAAAIYFQEANTDAALRTLHQGDSLECMAMTIQVLLRLDRLDLARKELKKMQEQDEDATLTQLATAWVNLATGGEKLQDAYYIFQEMADKYSPTLLLLNGQAACHMAQNRWEEAEGVLQEAL--DKDSSHAETLINLIVLTQHLGKPPEVTNRYLSQMKDAHKTHPFTKDYFAKENEFDRLATQY 312          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_015274504.1 (PREDICTED: coatomer subunit epsilon [Gekko japonicus])

HSP 1 Score: 220.3 bits (560), Expect = 8.700e-54
Identity = 126/300 (42.00%), Postives = 183/300 (61.00%), Query Frame = 0
Query:   23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323
            A    E D+L+ +R  FY+G FQAAINE   +   +P+ E ER  F+YRA++  ++Y VVL E+K        LQAVR+ A Y S   QR+ ++A L   +  +  AS+ +   MAA++Y  + +   ALRA+H G +LE  A+   I L+LDRLD A+++LK+MQ  DEDATLTQ+  AWV+LA GG   +DA  +FQE+  K+ S+ LLLNG     + QG++E+A+  L +AL  D D S+ +TL+N V  +QHL KP E   + LSQ++     HP++      +  FDRL  Q+A
Sbjct:    5 AAGQGETDELFDVRNNFYIGAFQAAINEAQRVKPSSPEKEAERDIFLYRAYIAQRKYGVVLDEIKPSSCP--ELQAVRMFAEYLSNENQRDPIVAELDKKMAKSMDASNTTFLLMAASVYFHDQNPDAALRALHQGDSLECMAMTIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKWSSTLLLLNGQAACYMAQGKWEDAEGVLQEAL--DKDSSHPETLINFVVLSQHLGKPPEVTNRYLSQMKDAHRNHPFIKEYQAKENDFDRLALQYA 300          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_020392305.1 (LOW QUALITY PROTEIN: coatomer subunit epsilon [Rhincodon typus])

HSP 1 Score: 220.3 bits (560), Expect = 8.700e-54
Identity = 124/300 (41.33%), Postives = 187/300 (62.33%), Query Frame = 0
Query:   23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323
            A+   + D L+ +R  FY+G++Q  INE   +   +P+ E ER  F+YRA++  ++Y VVL ++K G      LQAVR+ A Y S  +QR+A +A ++  +  +   ++ +   MAA+IYL E +   ALR +H G +LE  A+   I+L+LDRLD A+++LK+MQ  DEDATLTQ++ AWV+LA GG   +DA  +FQE+  KY S+ LLLNG     + QG++++A+  L +AL  D D S+ +TL+NLV  +QHL K  E   + LSQL+    +HP+V      +  FDRL  Q+A
Sbjct:    3 AMQQGDGDQLFDVRNSFYIGSYQQCINEAQKVKLSSPEKEVERDVFLYRAYIAQRKYGVVLDDIKSGAAP--ELQAVRMFAKYLSSEDQRDATIAEMEEEMAKSVDVNNTTFLLMAASIYLHEQNTDSALRTLHQGESLECMAMSIQIFLKLDRLDLARKELKKMQEQDEDATLTQLSTAWVNLAMGGDKLQDAYYIFQEMADKYTSTLLLLNGQAACQMAQGKWDDAEGVLQEAL--DKDSSHPETLINLVVLSQHLGKAPEVSNRYLSQLKDGHQSHPFVKEYLVKENEFDRLVLQYA 298          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: NP_001006339.1 (coatomer subunit epsilon [Gallus gallus] >Q5ZIK9.1 RecName: Full=Coatomer subunit epsilon; AltName: Full=Epsilon-coat protein; Short=Epsilon-COP >CAG32434.1 hypothetical protein RCJMB04_25f12 [Gallus gallus])

HSP 1 Score: 218.4 bits (555), Expect = 3.300e-53
Identity = 122/295 (41.36%), Postives = 181/295 (61.36%), Query Frame = 0
Query:   28 EPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323
            E D+L+ ++  FY+G +QAAINE   +   NP+ ETER  F++R+++  ++Y VVL E+K        LQAVR+ A Y S   QR+A++A L   +  +   ++ +   MAA+IY  + +   ALR +H G +LE  A+M  I L+LDRLD A+++LK+MQ  DEDATLTQ+  AWV+LA GG   +DA  +FQE+  K  S+ LLLNG     + QG++++A+  L +AL  D D  + +TL+N V  +QHL KP E   + LSQL+     HP++      +  FDRL  Q+A
Sbjct:   15 EADELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASP--ELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEAL--DKDSGHPETLINFVVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQYA 305          
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_015741605.1 (PREDICTED: coatomer subunit epsilon [Coturnix japonica])

HSP 1 Score: 218.4 bits (555), Expect = 3.300e-53
Identity = 122/295 (41.36%), Postives = 181/295 (61.36%), Query Frame = 0
Query:   28 EPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323
            E D+L+ ++  FY+G +QAAINE   +   NP+ ETER  F++R+++  ++Y VVL E+K        LQAVR+ A Y S   QR+A++A L   +  +   ++ +   MAA+IY  + +   ALR +H G +LE  A+M  I L+LDRLD A+++LK+MQ  DEDATLTQ+  AWV+LA GG   +DA  +FQE+  K  S+ LLLNG     + QG++++A+  L +AL  D D  + +TL+N V  +QHL KP E   + LSQL+     HP++      +  FDRL  Q+A
Sbjct:   15 EGDELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASP--ELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVTNTTFLLMAASIYFHDKNPDAALRTLHQGESLECTAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEAL--DKDSGHPETLINFVVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQYA 305          
The following BLAST results are available for this feature:
BLAST of NO07G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855422.11.300e-11073.60coatomer subunit epsilon [Nannochloropsis gaditana... [more]
CBJ26468.12.100e-7148.48Vesicle coat complex COPI, epsilon subunit [Ectoca... [more]
EWM26919.13.300e-6185.92coatomer subunit epsilon [Nannochloropsis gaditana... [more]
XP_009038577.12.300e-5442.95hypothetical protein AURANDRAFT_28840 [Aureococcus... [more]
KPP60989.15.100e-5441.14coatomer subunit epsilon-like [Scleropages formosu... [more]
XP_018586514.15.100e-5441.14PREDICTED: coatomer subunit epsilon [Scleropages f... [more]
XP_015274504.18.700e-5442.00PREDICTED: coatomer subunit epsilon [Gekko japonic... [more]
XP_020392305.18.700e-5441.33LOW QUALITY PROTEIN: coatomer subunit epsilon [Rhi... [more]
NP_001006339.13.300e-5341.36coatomer subunit epsilon [Gallus gallus] >Q5ZIK9.1... [more]
XP_015741605.13.300e-5341.36PREDICTED: coatomer subunit epsilon [Coturnix japo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL104nonsL104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008409NSK008409Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04560.1NO07G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G04560.2NO07G04560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G04560.3NO07G04560.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|340682gene_2804Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CPC22gene3619Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04560.1NO07G04560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G04560.2NO07G04560.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G04560.3NO07G04560.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04560 ID=NO07G04560|Name=NO07G04560|organism=Nannochloropsis oceanica|type=gene|length=3450bp
GCCTTGGCCCTTGCAAGTGCCCGCGGCTGAGGTCTTTCTCATCATATCAT
CACAGGCGTCATCGAGGCTGGGGGGCGATGCTTCCTTTGAATTAAGAAAC
CACACTCCTACGCGACCACACCATCACACAAACTACGTACATAGAAGGAT
TTCCAGTACACTAGCCTTTGGATCCGGGTCTTGTCTACTCTCTCTCCTTC
GTCCTTCTTCCCCTCGTCATCATGGCCCAAACGCACTTCTTCAGCGATGG
GCTCCCTTCCTTGCCTGCATACACCCCACTCATCCACACACATCTACCCC
CTTAATTGCACAGCACTCACCATGGCGGAACCGGACGATCTCTACACGCT
GCGTCAGGAATTTTACGTGGGCAACTTCCAGgttcgaaaaaagggtggga
ggacagggaggagcatggagtataggggatgactttctgaggctcgagcg
ggagtctttgccgcacttttgtcttagcaattcctcgcttcgtctttgtt
agagaatgtgtgcggcattaccattcttctgaatccgcgccttcttttcc
tggctttgccgtacaatagaccgagaaccctccctccctccctccctccc
tccctccctccctccctccctccctcgtttcccgcttccctcttatgcag
GCGGCCATCAACGAAGGTAGTGCCTTGGGCCGCGTCAACCCCGACTTGGA
GACGGAACGAGCCGAATTTGTCTACCGgtacgttgggaaaagagcaaaaa
ggagtgagagtctgaaggaggagatggccactggcacctatgtctttttg
agacgaacatttccgccgtgtgttgctcaccgttgttctccctccctccc
tccctccctccctccctccctccctccctccctcccatccttcctttctt
ttccttcccttgtatatagAGCCCACCTGGGCCTCAAGGAGTACGACGTG
GTCCTTCGTGAGGTGAAGGAAGGCGGGGACACCCCTATAGgcaagggagg
gaggaagggaggaagggagggagggaaggacgagagggcatgcaagcggt
attactgtctgggatagtccctgtaaccttgcattcacctttccctccat
tccccccactccctgtcctcccctcattccctgcagCCCTCCAGGCCGTT
CGCCTGCTAGCCGTCTACGAGTCTCGCCCCGAGCAGCGTGAGGCGGTCTT
GGCCACGTTGCAGgtagggagggaggaaggaggaggaggaggagcgtagg
caggcagggaggaaggaaagcagtcaggaaaagggggtgaaaagcagggg
aaattgggcaacggcgtagaggaaggaaggaaggaaaggagggacggagg
aagggaggcagggagggaccacctgtccctttggagagatgtgatacgca
cacatcaatcctctgcggccgtgagcctcatccgggtagcgtcgcttgac
attttcctcctttgccctccctccttccctccagGCCCTCCTCAACGATG
CCGCGACTGCGTCATCCCCGTCGCTGCAGACCATGGCAGCCACCATCTAC
CTCAAAGAAGGCTCGGTCAAGGAAGCGCTGCGGGCCGTGCACCTGGGCAT
GACCCTGGAGCAgtaagcagggagggggggaaggagggagggggcgaggg
ggtgacaacaacatgtgtgtgtcagcattcaacatctattcccccccccc
ccccacccacagGCGTGCGCTCATGACCGCCATCTACCTGCGCCTCGACC
GCCTCGACCACgtacgtcgcccttcctcccttcctccctccctcccacct
caaatctatccgtccttgcccaccctccctccctccctcctgcagGCCCA
GAGGCAGCTCAAGCAAATGCAAGCCGCGGACGAGGACGCGACCCTCACCC
AAATGACGGGCGCGTGGGTGGACTTGGCACAGgtagggaccaagggagga
agggagggagggagggagggagggagggaaggaaggaggacgatcgaaaa
cagatggatatccttgtcggctactcctttcttccaagcatccacctata
tcctccccccttccctccttccctccctccctccctccctccttccctcc
ctccccccctacctcttagGGCGGCACCGGCTACCGTGACGCCCAGCTGC
TTTTTCAGGAGCTTATTGCCAAGTACGGAAGCAGCGCCTTGCTCCTCAAC
Ggtaggaagggagggagggagggagggagggagggacatgcgaacctctc
aatactgagcgatttctaggtctgtggtttttactcattatgagcactgc
tccctccctccatccctctagGGCTGGGCGTGGCCCTCATCCACCAGGGT
CAGTACGAGGAGGCGGACAAACACCTCATGCAGGCCCTGCGCGAGgtgag
tgagggtgggggggaaagaaatagggagggagggatctaaagtacaacgg
agcgaatggaaggcgaaagtgcgcttatggactcggaagcagatgtcaat
aatcgtttccctcccttcttccctccctcctttcttccctccatccctcc
ttccatccctccctccatccctttctccatccctcccttcatccctccct
ccatccctccctccatccctccctccctagGACCCCGACAAGAGCAACGC
GGACACGCTGGTGAATCTGGTGGCCACAGCCCAGCACCTGCACAAGCCCC
AAGAGACGGTGGCGAAGCTGTTAAGgtagatgacagagaggaaagggagg
gactatccgggagacttgtcctgataatgattaatgatcccacccgattt
ccctctatcccctcctaccttccttcctctctttcttccttttctttgca
gCCAACTGCAGAAGTGCGCGCCCACCCACCCCTACGTCACCATGCTCTCC
ACCTTAGACACTGCATTTGACAGGCTGCAGGCGCAGTTTGCGTCGCACAT
CGTGCATGCATAAAGAGGGAGGAAGGGAGGGAAAGGAGGGAGGGGTGGAG
GGAGGGCACGGGGTACTGCAGAAGAGACAAGAGGCGAACAAAGAAGAAGA
AGGAAAAAAAGGTATAGACTCTCCTGAAATACAAAAACGCTACCAGAAGA
ATGAAAGGTGTAACTGTGGTCGGTGATAATTTTCTATTCCCGATTTTTAT
TTGGTATTGTTGTACGTAAGTGCTTCAATTTAATGAGGGAGCTTTGACAG
AGAAGGTAGGAGCTTCCGAGGTAAGGGTGGAGGTAGGGCGGTGGGAAGGA
GGTTCCCTCCCTGTCTGCGACTGTCAAGTGGAGAGAGGAGGAAGGAAGGT
GCAGAGGGTGGAAGGGAAGGAGGAGGGGTGGTGGAAAGCGCTTGACAGTG
TTGGGGCGGCGATGTGGGCCGCTGTGGGAGTGTAATGCTTGGCTTCGTGG
TCGACCGCGAGCTGACGTCGCTTTGTAACGTTAACATTGTTAAATTTGGG
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protein sequence of NO07G04560.1

>NO07G04560.1-protein ID=NO07G04560.1-protein|Name=NO07G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MGSLPCLHTPHSSTHIYPLNCTALTMAEPDDLYTLRQEFYVGNFQAAINE
GSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVR
LLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKE
ALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMT
GAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEA
DKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPT
HPYVTMLSTLDTAFDRLQAQFASHIVHA*
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protein sequence of NO07G04560.2

>NO07G04560.2-protein ID=NO07G04560.2-protein|Name=NO07G04560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MGSLPCLHTPHSSTHIYPLNCTALTMAEPDDLYTLRQEFYVGNFQAAINE
GSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVR
LLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKE
ALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMT
GAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEA
DKHLMQALREVSEGGGERNREGGI*
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protein sequence of NO07G04560.3

>NO07G04560.3-protein ID=NO07G04560.3-protein|Name=NO07G04560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MGSLPCLHTPHSSTHIYPLNCTALTMAEPDDLYTLRQEFYVGNFQAAINE
GSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVR
LLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKE
ALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMT
GAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEA
DKHLMQALREVSEGGGERNREGGI*
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