NO07G04560, NO07G04560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_005855422.1 (coatomer subunit epsilon [Nannochloropsis gaditana CCMP526] >EKU20929.1 coatomer subunit epsilon [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 409.1 bits (1050), Expect = 1.300e-110 Identity = 223/303 (73.60%), Postives = 240/303 (79.21%), Query Frame = 0 Query: 26 MAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFASHIVHA 329 MAEPDDLYTLRQEFYVGNFQ + A LGLKEYDV+ EVKEGGDTPIALQAVR A YE+ PEQREAV+ Q L + ATAS PSLQTMAA I+LKEG VK+ALRAVH G TLEQRALMTAIYLR+DRLDHAQ+QLK MQA+DEDATLTQMTGAWVDLAQGGTGYRDAQLLFQEL+AKYG+SALLLNGL YEEADK+L Q LREDPDKSNADTL+NL+ATAQHLHKP ETVAKLLSQLQK AP HPYV L TL+ AFDRLQAQFASHIV+A Sbjct: 1 MAEPDDLYTLRQEFYVGNFQDS------------------------ARLGLKEYDVIFGEVKEGGDTPIALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQRALMTAIYLRMDRLDHAQKQLKLMQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGL---------YEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 270
BLAST of NO07G04560 vs. NCBI_GenBank
Match: CBJ26468.1 (Vesicle coat complex COPI, epsilon subunit [Ectocarpus siliculosus]) HSP 1 Score: 278.9 bits (712), Expect = 2.100e-71 Identity = 144/297 (48.48%), Postives = 211/297 (71.04%), Query Frame = 0 Query: 26 MAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323 M+EPDDL+TLR F++G++Q AI EGS LGR+ L ER EF+YR++L L ++ +VL E+K+ D P ALQAVRL+A Y S PE RE V+ TL+ L D + ++P++Q +AA ++ EG +KEA+R++ G+T+EQ A++ IYLR+DR+D A +Q++ +Q AD+DATLTQ+ AWV LAQGG Y++A +F ELI KY +S LLLN VA +H G+Y+EA+ L++A+ + +++ADTLVNL+ +HL KP V + ++QL+ P HPYV L+ ++AFDR+ A FA Sbjct: 1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEIKD--DAPPALQAVRLMAQYLSNPESREIVIETLKMWLTDPGSCNNPTVQLLAAAVFTHEGDLKEAVRSIRNGVTMEQTAMLAQIYLRMDRVDLALKQVQVLQQADDDATLTQLVVAWVHLAQGGKRYQEAAYIFDELIDKYQASPLLLNSSAVAKMHMGEYQEAETILVEAISK--SQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFA 293
BLAST of NO07G04560 vs. NCBI_GenBank
Match: EWM26919.1 (coatomer subunit epsilon [Nannochloropsis gaditana]) HSP 1 Score: 245.0 bits (624), Expect = 3.300e-61 Identity = 122/142 (85.92%), Postives = 132/142 (92.96%), Query Frame = 0 Query: 187 MQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFASHIVHA 329 MQA+DEDATLTQMTGAWVDLAQGGTGYRDAQLLFQEL+AKYG+SALLLNGLGV+L+HQG YEEADK+L Q LREDPDKSNADTL+NL+ATAQHLHKP ETVAKLLSQLQK AP HPYV L TL+ AFDRLQAQFASHIV+A Sbjct: 1 MQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGLGVSLLHQGLYEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 142
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_009038577.1 (hypothetical protein AURANDRAFT_28840 [Aureococcus anophagefferens] >EGB06832.1 hypothetical protein AURANDRAFT_28840 [Aureococcus anophagefferens]) HSP 1 Score: 222.2 bits (565), Expect = 2.300e-54 Identity = 128/298 (42.95%), Postives = 188/298 (63.09%), Query Frame = 0 Query: 26 MAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVY-ESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323 MAEPD+LYTLR F++GNF AI EG+ L R++ L ER EFVYR+++GL +Y +V+ EV E ++ + LQAV+LLA Y E ++ V+ TL L DAA+ P++Q +AA +Y KE +KEA A+ G T+EQ AL L++ RLD AQ LK++ ADEDATLTQ+ WV+LA GG Y++A F+ELI K+ ++ LLN L V +H +++EA+K L+QA + + ++ADTL+N+V H+ K ++ +L Q+ P HPY + + FD L ++A Sbjct: 1 MAEPDELYTLRNRFWLGNFSMAIAEGNQLSRLSDVLAVERDEFVYRSYIGLGQYGLVIGEVNE--ESAMPLQAVKLLAQYLEDPASTKDMVIMTLGEWLGDAASKDHPTVQLVAALVYEKEDLMKEAFTAIRHGQTMEQLALWAQFCLKIHRLDLAQAHLKKLSDADEDATLTQLVSGWVNLATGGEKYKEAAYAFEELIDKFEATLSLLNSLAVCKMHLREWDEAEKLLLQA--QSKNVNDADTLINMVTCYAHMGKDEQ---RLQKQMYGQHPNHPYTLKMKKAEAEFDVLAKKYA 291
BLAST of NO07G04560 vs. NCBI_GenBank
Match: KPP60989.1 (coatomer subunit epsilon-like [Scleropages formosus]) HSP 1 Score: 221.1 bits (562), Expect = 5.100e-54 Identity = 123/299 (41.14%), Postives = 183/299 (61.20%), Query Frame = 0 Query: 23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQF 322 A E D+L+ ++ FY+G++Q INE + +P+ E ER F+YRA+L ++Y VVL ++K ++ + LQAVR+ A Y S +R+A++A L + + A++ + MAA IY +E + ALR +H G +LE A+ + LRLDRLD A+++LK+MQ DEDATLTQ+ AWV+LA GG +DA +FQE+ KY + LLLNG + Q ++EEA+ L +AL D D S+A+TL+NL+ QHL KP E + LSQ++ THP+ + FDRL Q+ Sbjct: 29 ASQQGEVDELFDVKNAFYIGSYQQCINEAQKVKPSSPEKEIERDTFLYRAYLAQRKYGVVLDDIKP--NSAVELQAVRMFAEYMSSEAKRDAIVADLDKKMTKSVDAANTTFLLMAAAIYFQEANTDAALRTLHQGDSLECMAMTIQVLLRLDRLDLARKELKKMQEQDEDATLTQLATAWVNLATGGEKLQDAYYIFQEMADKYSPTLLLLNGQAACHMAQNRWEEAEGVLQEAL--DKDSSHAETLINLIVLTQHLGKPPEVTNRYLSQMKDAHKTHPFTKDYFAKENEFDRLATQY 323
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_018586514.1 (PREDICTED: coatomer subunit epsilon [Scleropages formosus]) HSP 1 Score: 221.1 bits (562), Expect = 5.100e-54 Identity = 123/299 (41.14%), Postives = 183/299 (61.20%), Query Frame = 0 Query: 23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQF 322 A E D+L+ ++ FY+G++Q INE + +P+ E ER F+YRA+L ++Y VVL ++K ++ + LQAVR+ A Y S +R+A++A L + + A++ + MAA IY +E + ALR +H G +LE A+ + LRLDRLD A+++LK+MQ DEDATLTQ+ AWV+LA GG +DA +FQE+ KY + LLLNG + Q ++EEA+ L +AL D D S+A+TL+NL+ QHL KP E + LSQ++ THP+ + FDRL Q+ Sbjct: 18 ASQQGEVDELFDVKNAFYIGSYQQCINEAQKVKPSSPEKEIERDTFLYRAYLAQRKYGVVLDDIKP--NSAVELQAVRMFAEYMSSEAKRDAIVADLDKKMTKSVDAANTTFLLMAAAIYFQEANTDAALRTLHQGDSLECMAMTIQVLLRLDRLDLARKELKKMQEQDEDATLTQLATAWVNLATGGEKLQDAYYIFQEMADKYSPTLLLLNGQAACHMAQNRWEEAEGVLQEAL--DKDSSHAETLINLIVLTQHLGKPPEVTNRYLSQMKDAHKTHPFTKDYFAKENEFDRLATQY 312
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_015274504.1 (PREDICTED: coatomer subunit epsilon [Gekko japonicus]) HSP 1 Score: 220.3 bits (560), Expect = 8.700e-54 Identity = 126/300 (42.00%), Postives = 183/300 (61.00%), Query Frame = 0 Query: 23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323 A E D+L+ +R FY+G FQAAINE + +P+ E ER F+YRA++ ++Y VVL E+K LQAVR+ A Y S QR+ ++A L + + AS+ + MAA++Y + + ALRA+H G +LE A+ I L+LDRLD A+++LK+MQ DEDATLTQ+ AWV+LA GG +DA +FQE+ K+ S+ LLLNG + QG++E+A+ L +AL D D S+ +TL+N V +QHL KP E + LSQ++ HP++ + FDRL Q+A Sbjct: 5 AAGQGETDELFDVRNNFYIGAFQAAINEAQRVKPSSPEKEAERDIFLYRAYIAQRKYGVVLDEIKPSSCP--ELQAVRMFAEYLSNENQRDPIVAELDKKMAKSMDASNTTFLLMAASVYFHDQNPDAALRALHQGDSLECMAMTIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKWSSTLLLLNGQAACYMAQGKWEDAEGVLQEAL--DKDSSHPETLINFVVLSQHLGKPPEVTNRYLSQMKDAHRNHPFIKEYQAKENDFDRLALQYA 300
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_020392305.1 (LOW QUALITY PROTEIN: coatomer subunit epsilon [Rhincodon typus]) HSP 1 Score: 220.3 bits (560), Expect = 8.700e-54 Identity = 124/300 (41.33%), Postives = 187/300 (62.33%), Query Frame = 0 Query: 23 ALTMAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323 A+ + D L+ +R FY+G++Q INE + +P+ E ER F+YRA++ ++Y VVL ++K G LQAVR+ A Y S +QR+A +A ++ + + ++ + MAA+IYL E + ALR +H G +LE A+ I+L+LDRLD A+++LK+MQ DEDATLTQ++ AWV+LA GG +DA +FQE+ KY S+ LLLNG + QG++++A+ L +AL D D S+ +TL+NLV +QHL K E + LSQL+ +HP+V + FDRL Q+A Sbjct: 3 AMQQGDGDQLFDVRNSFYIGSYQQCINEAQKVKLSSPEKEVERDVFLYRAYIAQRKYGVVLDDIKSGAAP--ELQAVRMFAKYLSSEDQRDATIAEMEEEMAKSVDVNNTTFLLMAASIYLHEQNTDSALRTLHQGESLECMAMSIQIFLKLDRLDLARKELKKMQEQDEDATLTQLSTAWVNLAMGGDKLQDAYYIFQEMADKYTSTLLLLNGQAACQMAQGKWDDAEGVLQEAL--DKDSSHPETLINLVVLSQHLGKAPEVSNRYLSQLKDGHQSHPFVKEYLVKENEFDRLVLQYA 298
BLAST of NO07G04560 vs. NCBI_GenBank
Match: NP_001006339.1 (coatomer subunit epsilon [Gallus gallus] >Q5ZIK9.1 RecName: Full=Coatomer subunit epsilon; AltName: Full=Epsilon-coat protein; Short=Epsilon-COP >CAG32434.1 hypothetical protein RCJMB04_25f12 [Gallus gallus]) HSP 1 Score: 218.4 bits (555), Expect = 3.300e-53 Identity = 122/295 (41.36%), Postives = 181/295 (61.36%), Query Frame = 0 Query: 28 EPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323 E D+L+ ++ FY+G +QAAINE + NP+ ETER F++R+++ ++Y VVL E+K LQAVR+ A Y S QR+A++A L + + ++ + MAA+IY + + ALR +H G +LE A+M I L+LDRLD A+++LK+MQ DEDATLTQ+ AWV+LA GG +DA +FQE+ K S+ LLLNG + QG++++A+ L +AL D D + +TL+N V +QHL KP E + LSQL+ HP++ + FDRL Q+A Sbjct: 15 EADELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASP--ELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEAL--DKDSGHPETLINFVVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQYA 305
BLAST of NO07G04560 vs. NCBI_GenBank
Match: XP_015741605.1 (PREDICTED: coatomer subunit epsilon [Coturnix japonica]) HSP 1 Score: 218.4 bits (555), Expect = 3.300e-53 Identity = 122/295 (41.36%), Postives = 181/295 (61.36%), Query Frame = 0 Query: 28 EPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFA 323 E D+L+ ++ FY+G +QAAINE + NP+ ETER F++R+++ ++Y VVL E+K LQAVR+ A Y S QR+A++A L + + ++ + MAA+IY + + ALR +H G +LE A+M I L+LDRLD A+++LK+MQ DEDATLTQ+ AWV+LA GG +DA +FQE+ K S+ LLLNG + QG++++A+ L +AL D D + +TL+N V +QHL KP E + LSQL+ HP++ + FDRL Q+A Sbjct: 15 EGDELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASP--ELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVTNTTFLLMAASIYFHDKNPDAALRTLHQGESLECTAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEAL--DKDSGHPETLINFVVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQYA 305 The following BLAST results are available for this feature:
BLAST of NO07G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G04560 ID=NO07G04560|Name=NO07G04560|organism=Nannochloropsis oceanica|type=gene|length=3450bpback to top protein sequence of NO07G04560.1 >NO07G04560.1-protein ID=NO07G04560.1-protein|Name=NO07G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bpback to top protein sequence of NO07G04560.2 >NO07G04560.2-protein ID=NO07G04560.2-protein|Name=NO07G04560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=275bpback to top protein sequence of NO07G04560.3 >NO07G04560.3-protein ID=NO07G04560.3-protein|Name=NO07G04560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=275bpback to top Synonyms
Publications
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