NO07G04480, NO07G04480 (gene) Nannochloropsis oceanica

Overview
NameNO07G04480
Unique NameNO07G04480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2624
Alignment locationchr7:1254486..1257109 +

Link to JBrowse

Properties
Property NameValue
DescriptionActin cross-linking
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1254486..1257109 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051015actin filament binding
GO:0030674protein binding, bridging
Vocabulary: INTERPRO
TermDefinition
IPR008999Actin_cross-linking
IPR022768Fascin-domain
Homology
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BLAST of NO07G04480 vs. NCBI_GenBank
Match: EWM26935.1 (Actin cross-linking [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 4.700e-24
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 0 
Query:   58 IIMTGNNAVHATFQVYSKVHSDVTPYLSVASDHVKADTAGGDHAVWTVEHLPKDHVALKAHNGHYLSINSHGQIHMSKDRSHEAHFIFIKEDLDHPGCVAIKEPVHNTFL 168
            ++    +A H TF+ +SK  +   PYL+V SD   A  A  +H++WTVEHLP D VALK +NGHYLS+NSH Q+HM+K+ S E+H  F+    D PGCVAIKE VH+TFL
Sbjct:   12 MVAHNQSAGHVTFRPFSKPENPEAPYLTVQSDKPVALPAYSEHSLWTVEHLPNDEVALKGYNGHYLSVNSHFQVHMAKELSKESHLQFVTH-ADFPGCVAIKETVHHTFL 120
The following BLAST results are available for this feature:
BLAST of NO07G04480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26935.14.700e-2452.73Actin cross-linking [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL104nonsL104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008419NSK008419Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04480.1NO07G04480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101115g1gene3611Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04480.1NO07G04480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04480 ID=NO07G04480|Name=NO07G04480|organism=Nannochloropsis oceanica|type=gene|length=2624bp
CACCTTTGCTTGGCCTTTCTGTTTACTTGACTTAATTGTACATGAAATAT
TTATCGTGCTTCTTTCTTTGCCTGCCCATCCCCTCACCTCAACCACCGTC
GTTCCAATGCTCTTACCCTACTCTCAAACGCCGGGCTGATAATCGGCAGG
TCCATCTCACAGAAAGGGTTCATCAGCAACTTCACGTACAGTTCATACAC
CCCCTTGAAGAATCCTAGTATACTATCCTCCCCTCCACTCCCATCATGCA
GCAAGAGGAAAGCTGTGCCTCCCGCGGTCAGGAACGCGTGGACCACCTGG
CCATTAAACCGATCGATTGCTCGTAGGTGCATGTGTGGCGAAGCCCACAT
GGCCTTTTCCAACATGTCCAGGGAGGAGTGAAGGATAAATTGGTTGAGAT
GCGCATTGTTTGCATCGGCAGGCGAGGGCTGGGGGGGAAGGGAGAGTGTG
ACGTGCGGGAGAGAAGGGAGGGGAGGGAAAGGGAAAGACAGGTAAAGGAG
AGGTGGGTGGAAGGGTGAGAATTTTGACATGAAAGGCTGCGAGTCCCACG
CAGCGATGCGTTAAAAAAGTGTAAAGACGTGGAAACAGCAGTAGTCACAA
CCGCATGAGGAGCAGGAAGACAGTCTCGGACGTACCTTGCCTGAAGTGTT
GGTGGTCGAGGTGGAGAAGTCGGCCTCAAATATAGGCTCATTCTTTCCCA
CAATCACAAACAAGGACATGGCGAGGTTTTGGGGGAGAGGATGGCGATGT
AGGCGTACGACAAGGCTGTCTGTGTTTGAAGTGGTGGTAACGACAAGTAT
GGCTTGAAAGAAAGTGAAGAAGGCAAGGGCATGGTAACGATGTGATGTTG
TCTGTTGCCATTTCTACCTGCTGGTGTGGTTGTGGTGATGCGCCTGTTCC
AAGTAGCACGTTAAATGCATACATATATGCCCACGCGCCTCACCCTTGTC
AGTGGCTCGGTAAGATTTGGTTCCGAGCCCCCTCCCCCGAGCCCAGGGCC
CCTGGCCTCGGGCGGCCCTGATCCTCTCGCTCCCCTCTCGCTCTCGGACC
TCCGAAAAAAGGACAGAAAACATTCTTTCTTCGTATCTGGTTCAACATGC
CGCCGCATTGCATGTGGTCCTCACCCAAAGCACACACCTGGCACAGGTGT
GTGCACAAGAAATTCGTTTCTTGTAGCGTGCGCGCAGCACGGCCGCATCT
GGAGGCCTCTGTCTTTGAAATGGCAGCCGCTCCCGGTTCGTCGCTCCCCT
CGATCCGGGACATAAATTCAACCACATTCTTTTGATAGAATCGTCCGCCA
CCGCCGCTTCTGCACTGCAAATGCCCTTTTCCACGCCCGTCTGGCACGTG
GCCTATTTACAGAATCTCGCTCTTCCAATCATGCACCGAGCTTGCTCCTC
TTCGTCCTCACACATCAATTCTTTCCGCACTCCTCACCATATGCACAGGA
AACGGCTTCCTCAAGCTTCCAAACCACCCTCCTACTTCATCATCATCATG
ACGGGTAACAACGCTGTGCACGCCACTTTCCAGGTTTACAGCAAGGTCCA
TAGCGACGTGACGCCCTATCTGTCTGTCGCTTCCGATCATgtgagtgcaa
aggaggaaagaggggggagacggaggaaagggtactgccatatggtgaac
gaataggtactcgaggggcaacgatgatgcgttcacatcatgcagcaatg
ttctatcctcacttatgttgccactccatctccctcccttcacccttccg
tgaccctttcccccccccatgtcaaggccaatgtcgtcgggactccttac
gcacgccatcttccctctttcctccttccctcccttccctttcagGTCAA
AGCCGATACTGCCGGTGGTGACCACGCCGTCTGGACTGTGGAACATCTGC
CCAAGGATCACGTGGCCCTCAAGGCGCACAACGGGCACTACCTGAGCATT
AACAGCCACGGACAGAgtgagtgacagcgaggaagggagaaggggaggaa
gggagagagggaagaagtaccttctcgtcctccaatatcttatttcacaa
gcaatgcgaagagtcaacaacagactcctgtccttgcaacagtgcctcac
tcactccctccctccctccctccctccctccctccttccctccctccttc
tctccttctctccctccctccagTCCACATGTCCAAGGACCGATCCCACG
AGGCACATTTCATCTTTATCAAGGAGGATCTCGACCACCCCGGATGCGTG
GCTATCAAGGAGCCGGTGCACAATACCTTCCTGACgtaaggaggatggga
gggaggaagggaacgagaaaggtgtggaacctctcccgtgcgtttctaca
tcttcttaccgttgtcccccctcctcccccctccctccctccctccaatt
accctctctttcccctagATTTGACGCCCACGGGCACTTGATCGCGAAGA
AGGGCTTGTCCGAGCTGGACGATCCTGCCAAGCTCCCCTTCTTCAAGATG
GAGGAGAAGAAGACGGCGCACAAGGAGCAGCACCACGGCCACCACCACCA
CTAGGGGGAGGAAGGAAGGGAGGGAGGAAGGGAGAGAACTACGTGGCTGC
CATTACTAGGTGGAGGGACCATCT
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protein sequence of NO07G04480.1

>NO07G04480.1-protein ID=NO07G04480.1-protein|Name=NO07G04480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MPFSTPVWHVAYLQNLALPIMHRACSSSSSHINSFRTPHHMHRKRLPQAS
KPPSYFIIIMTGNNAVHATFQVYSKVHSDVTPYLSVASDHVKADTAGGDH
AVWTVEHLPKDHVALKAHNGHYLSINSHGQIHMSKDRSHEAHFIFIKEDL
DHPGCVAIKEPVHNTFLTFDAHGHLIAKKGLSELDDPAKLPFFKMEEKKT
AHKEQHHGHHHH*
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Synonyms
Publications