NO07G04470, NO07G04470 (gene) Nannochloropsis oceanica

Overview
NameNO07G04470
Unique NameNO07G04470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1468
Alignment locationchr7:1254486..1255953 -

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Properties
Property NameValue
DescriptionTrafficking protein particle complex subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1254486..1255953 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR006722Sedlin
Homology
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: XP_002903083.1 (trafficking protein particle complex subunit 2, putative [Phytophthora infestans T30-4] >XP_008911205.1 hypothetical protein PPTG_15669 [Phytophthora parasitica INRA-310] >EEY55507.1 trafficking protein particle complex subunit 2, putative [Phytophthora infestans T30-4] >ETI38016.1 hypothetical protein F443_16117 [Phytophthora parasitica P1569] >ETK78230.1 hypothetical protein L915_15663 [Phytophthora parasitica] >ETL31665.1 hypothetical protein L916_15558 [Phytophthora parasitica] >ETL84895.1 hypothetical protein L917_15381 [Phytophthora parasitica] >ETM38078.1 hypothetical protein L914_15513 [Phytophthora parasitica] >ETN03432.1 hypothetical protein PPTG_15669 [Phytophthora parasitica INRA-310] >ETO66785.1 hypothetical protein F444_16102 [Phytophthora parasitica P1976] >ETP07906.1 hypothetical protein F441_15946 [Phytophthora parasitica CJ01A1] >ETP35973.1 hypothetical protein F442_15970 [Phytophthora parasitica P10297] >KUF76774.1 Transport protein particle 20 kDa subunit [Phytophthora nicotianae] >POM67901.1 Trafficking protein particle complex subunit 2 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 133.3 bits (334), Expect = 6.100e-28
Identity = 63/141 (44.68%), Postives = 95/141 (67.38%), Query Frame = 0 
Query:    1 MSLFVIVGKNEPIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            MS+FV+VG  EP+++ +                  +AH+++F+LH++LD++++ MW +P M L+ +DRFN Q+V AF+TA G  FLLLH+ +  +D++  FF  V+ELYVKLLMNPF E D PI S  F++RV+ L RR+L
Sbjct:    1 MSMFVVVGSKEPLYKMEMRARR-----------EESAHVDEFVLHAALDLVDELMWTTPAMALKVVDRFNDQLVSAFVTASGVKFLLLHE-TRNDDTVKAFFHEVHELYVKLLMNPFYEYDTPISSEVFDARVKTLARRYL 129
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BLAST of NO07G04470 vs. NCBI_GenBank
Match: EJK71892.1 (hypothetical protein THAOC_06626 [Thalassiosira oceanica])

HSP 1 Score: 132.1 bits (331), Expect = 1.400e-27
Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 0 
Query:    3 LFVIVGKNEPIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            LFVIVGKNEP++EA+  TST   S   S +   +   N F+LHS+LD++EK+ W +  M+LR +D+ N Q V  FLTA    F+LLH G  GE+ +  FF  VY+ YVKL MNPF + D PI S AF++RVRA  R +L
Sbjct:    7 LFVIVGKNEPLYEAEIDTSTGIHS---SSSGDLSTRQNYFVLHSALDLVEKSAWTTNSMYLRVVDKVNHQQVSTFLTAANVKFMLLHSGK-GEEVVKNFFNEVYQYYVKLSMNPFYKFDTPISSKAFDTRVRAAARAYL 141
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BLAST of NO07G04470 vs. NCBI_GenBank
Match: XP_002290508.1 (hypothetical protein THAPSDRAFT_19622, partial [Thalassiosira pseudonana CCMP1335] >EED92260.1 hypothetical protein THAPSDRAFT_19622, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 131.3 bits (329), Expect = 2.300e-27
Identity = 69/137 (50.36%), Postives = 90/137 (65.69%), Query Frame = 0 
Query:    5 VIVGKNEPIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            VIVGKNEP+FEA+  T+     G PS  D +    N F+LHS++D++EK+ W + +M+LR +D+ N Q V  FLTAG   F+LLH G  G+D I  FF  VY  YVKL MNPF + D PI S AF++RVRA  R +L
Sbjct:    1 VIVGKNEPLFEAEVDTT---AQGAPSGNDLSTRQ-NYFVLHSAIDLVEKSAWTTNNMYLRVVDKVNHQQVSTFLTAGNVKFMLLHGGK-GDDVIKSFFNEVYGYYVKLSMNPFYKYDTPITSKAFDARVRASARTYL 132
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: CDH53446.1 (trafficking protein particle complex subunit 2 [Lichtheimia corymbifera JMRC:FSU:9682] >CDS12254.1 hypothetical protein LRAMOSA04449 [Lichtheimia ramosa])

HSP 1 Score: 130.2 bits (326), Expect = 5.200e-27
Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 0 
Query:    4 FVIVGKNE-PIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            F IVG  + PI+E D   S+ ++S        ++ HLNQFI H++LD++E+  W +  M+L+++DRFN Q V AF+TA    F+LLHD    EDSI  FF  VYELY+K+LMNPF E + PI +P F++RV+ + RR+L
Sbjct:    7 FAIVGATDNPIYETDIIPSSRSSSLLEHNKRDDHKHLNQFIAHAALDVVEEVQWGTQAMYLKSVDRFNEQYVSAFVTANNVKFMLLHD-QKSEDSIRNFFNDVYELYIKILMNPFYEKNSPIANPQFDNRVKMIARRFL 144
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: CEG63923.1 (hypothetical protein RMATCC62417_00989 [Rhizopus microsporus])

HSP 1 Score: 128.6 bits (322), Expect = 1.500e-26
Identity = 66/140 (47.14%), Postives = 97/140 (69.29%), Query Frame = 0 
Query:    4 FVIVGKNE-PIFEADFSTSTTNTSG-KPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            FVIVG  + PI+E++   S+ +++   PS    ++ HLNQFI+H++LD++E+  W    M+L++IDRFN   V  F+TAG   F+LLHD    EDSI  FF  VYELY+K+LMNPF E + PI +P+F++RV+ + RR+L
Sbjct:    6 FVIVGATDNPIYESEIIPSSRSSAFIDPSRQKEDHKHLNQFIIHAALDVVEEYQWNVQAMYLKSIDRFNEYYVSCFVTAGNVKFMLLHD-QKSEDSIKSFFTEVYELYIKILMNPFYEKNAPIANPSFDNRVKLVARRFL 144
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: CEI97325.1 (hypothetical protein RMCBS344292_11460 [Rhizopus microsporus])

HSP 1 Score: 128.6 bits (322), Expect = 1.500e-26
Identity = 66/139 (47.48%), Postives = 96/139 (69.06%), Query Frame = 0 
Query:    4 FVIVGKNE-PIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            FVIVG  + PI+E++   S + +S    P+  ++ HLNQFI+H++LD++E+  W    M+L++IDRFN   V  F+TAG   F+LLHD    EDSI  FF  VYELY+K+LMNPF E + PI +P+F++RV+ + RR+L
Sbjct:    6 FVIVGATDNPIYESEIIPS-SRSSAFIDPSREDHKHLNQFIIHAALDVVEEYQWNVQAMYLKSIDRFNEYYVSCFVTAGNVKFMLLHD-QKSEDSIKSFFTEVYELYIKILMNPFYEKNAPITNPSFDNRVKLVARRFL 142
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: CEI92455.1 (hypothetical protein RMCBS344292_06713 [Rhizopus microsporus])

HSP 1 Score: 128.6 bits (322), Expect = 1.500e-26
Identity = 66/139 (47.48%), Postives = 96/139 (69.06%), Query Frame = 0 
Query:    4 FVIVGKNE-PIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            FVIVG  + PI+E++   S + +S    P+  ++ HLNQFI+H++LD++E+  W    M+L++IDRFN   V  F+TAG   F+LLHD    EDSI  FF  VYELY+K+LMNPF E + PI +P+F++RV+ + RR+L
Sbjct:    6 FVIVGATDNPIYESEIIPS-SRSSAFIDPSREDHKHLNQFIIHAALDVVEEYQWNVQAMYLKSIDRFNEYYVSCFVTAGNVKFMLLHD-QKSEDSIKSFFTEVYELYIKILMNPFYEKNAPIANPSFDNRVKLVARRFL 142
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: ORE23342.1 (mbp-1 interacting protein-2a [Rhizopus microsporus])

HSP 1 Score: 128.6 bits (322), Expect = 1.500e-26
Identity = 66/140 (47.14%), Postives = 97/140 (69.29%), Query Frame = 0 
Query:    4 FVIVGKNE-PIFEADFSTSTTNTSG-KPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            FVIVG  + PI+E++   S+ +++   PS    ++ HLNQFI+H++LD++E+  W    M+L++IDRFN   V  F+TAG   F+LLHD    EDSI  FF  VYELY+K+LMNPF E + PI +P+F++RV+ + RR+L
Sbjct:    6 FVIVGATDNPIYESEIIPSSRSSAFIDPSRQKEDHKHLNQFIIHAALDVVEEYQWNVQAMYLKSIDRFNEYYVSCFVTAGNVKFMLLHD-QKSEDSIKSFFTEVYELYIKILMNPFYEKNAPITNPSFDNRVKLVARRFL 144
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: OAJ37458.1 (hypothetical protein BDEG_21475 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 128.3 bits (321), Expect = 2.000e-26
Identity = 65/141 (46.10%), Postives = 96/141 (68.09%), Query Frame = 0 
Query:    2 SLFVIVG-KNEPIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            S F IVG K+ P++EA+F      + G+ S  D +  H+NQF++H++LD++++ MW +  M+L+ +DRFN  +V AF+T  G  F+LLHD S   D I  FF+  YELY+K+LMNPF E++ PI S AF+ R+RA  R+WL
Sbjct:    5 SYFAIVGTKDSPLYEAEFGPI---SRGEVSKKD-DLRHMNQFVVHAALDVVDELMWGTQAMYLKVVDRFNEWLVSAFVTPSGVRFILLHDTS-NTDGIRNFFQECYELYIKVLMNPFTEINAPITSGAFDQRIRAQGRKWL 140
[Close]
BLAST of NO07G04470 vs. NCBI_GenBank
Match: GAX94706.1 (Hypothetical protein PINS_002615 [Pythium insidiosum])

HSP 1 Score: 128.3 bits (321), Expect = 2.000e-26
Identity = 63/141 (44.68%), Postives = 94/141 (66.67%), Query Frame = 0 
Query:    1 MSLFVIVGKNEPIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDMLEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILGFFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWL 142
            MS+FV+VG  EP+++ +  T               +AH+++F+LHS+LD++++ MW S  M L+ +D+FN Q+V AF+TA    FLLLH+ +  +D+I  FF  V+ELY+KLLMNPF E D PI S  F++RV+ L RR+L
Sbjct: 1103 MSMFVLVGSKEPLYKMEMRTRR-----------EESAHVDEFLLHSALDIVDEMMWTSQAMALKVVDKFNDQLVSAFVTATNVKFLLLHE-TRNDDTIKAFFHEVHELYLKLLMNPFYEYDTPITSEIFDARVKTLARRYL 1231
The following BLAST results are available for this feature:
BLAST of NO07G04470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002903083.16.100e-2844.68trafficking protein particle complex subunit 2, pu... [more]
EJK71892.11.400e-2749.64hypothetical protein THAOC_06626 [Thalassiosira oc... [more]
XP_002290508.12.300e-2750.36hypothetical protein THAPSDRAFT_19622, partial [Th... [more]
CDH53446.15.200e-2746.76trafficking protein particle complex subunit 2 [Li... [more]
CEG63923.11.500e-2647.14hypothetical protein RMATCC62417_00989 [Rhizopus m... [more]
CEI97325.11.500e-2647.48hypothetical protein RMCBS344292_11460 [Rhizopus m... [more]
CEI92455.11.500e-2647.48hypothetical protein RMCBS344292_06713 [Rhizopus m... [more]
ORE23342.11.500e-2647.14mbp-1 interacting protein-2a [Rhizopus microsporus... [more]
OAJ37458.12.000e-2646.10hypothetical protein BDEG_21475 [Batrachochytrium ... [more]
GAX94706.12.000e-2644.68Hypothetical protein PINS_002615 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04470.1NO07G04470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539125gene_2797Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04470.1NO07G04470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04470 ID=NO07G04470|Name=NO07G04470|organism=Nannochloropsis oceanica|type=gene|length=1468bp
AAGCTTGAGGAAGCCGTTTCCTGTGCATATGGTGAGGAGTGCGGAAAGAA
TTGATGTGTGAGGACGAAGAGGAGCAAGCTCGGTGCATGATTGGAAGAGC
GAGATTCTGTAAATAGGCCACGTGCCAGACGGGCGTGGAAAAGGGCATTT
GCAGTGCAGAAGCGGCGGTGGCGGACGATTCTATCAAAAGAATGTGGTTG
AATTTATGTCCCGGATCGAGGGGAGCGACGAACCGGGAGCGGCTGCCATT
TCAAAGACAGAGGCCTCCAGATGCGGCCGTGCTGCGCGCACGCTACAAGA
AACGAATTTCTTGTGCACACACCTGTGCCAGGTGTGTGCTTTGGGTGAGG
ACCACATGCAATGCGGCGGCATGTTGAACCAGATACGAAGAAAGAATGTT
TTCTGTCCTTTTTTCGGAGGTCCGAGAGCGAGAGGGGAGCGAGAGGATCA
GGGCCGCCCGAGGCCAGGGGCCCTGGGCTCGGGGGAGGGGGCTCGGAACC
AAATCTTACCGAGCCACTGACAAGGGTGAGGCGCGTGGGCATATATGTAT
GCATTTAACGTGCTACTTGGAACAGGCGCATCACCACAACCACACCAGCA
GGTAGAAATGGCAACAGACAACATCACATCGTTACCATGCCCTTGCCTTC
TTCACTTTCTTTCAAGCCATACTTGTCGTTACCACCACTTCAAACACAGA
CAGCCTTGTCGTACGCCTACATCGCCATCCTCTCCCCCAAAACCTCGCCA
TGTCCTTGTTTGTGATTGTGGGAAAGAATGAGCCTATATTTGAGGCCGAC
TTCTCCACCTCGACCACCAACACTTCAGGCAAGgtacgtccgagactgtc
ttcctgctcctcatgcggttgtgactactgctgtttccacgtctttacac
ttttttaacgcatcgctgcgtgggactcgcagcctttcatgtcaaaattc
tcacccttccacccacctctcctttacctgtctttccctttccctcccct
cccttctctcccgcacgtcacactctcccttcccccccagCCCTCGCCTG
CCGATGCAAACAATGCGCATCTCAACCAATTTATCCTTCACTCCTCCCTG
GACATGTTGGAAAAGGCCATGTGGGCTTCGCCACACATGCACCTACGAGC
AATCGATCGGTTTAATGGCCAGGTGGTCCACGCGTTCCTGACCGCGGGAG
GCACAGCTTTCCTCTTGCTGCATGATGGGAGTGGAGGGGAGGATAGTATA
CTAGGATTCTTCAAGGGGGTGTATGAACTGTACGTGAAGTTGCTGATGAA
CCCTTTCTGTGAGATGGACCTGCCGATTATCAGCCCGGCGTTTGAGAGTA
GGGTAAGAGCATTGGAACGACGGTGGTTGAGGTGAGGGGATGGGCAGGCA
AAGAAAGAAGCACGATAAATATTTCATGTACAATTAAGTCAAGTAAACAG
AAAGGCCAAGCAAAGGTG
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protein sequence of NO07G04470.1

>NO07G04470.1-protein ID=NO07G04470.1-protein|Name=NO07G04470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MSLFVIVGKNEPIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDM
LEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILG
FFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWLR*
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Synonyms
Publications