NO07G04460, NO07G04460 (gene) Nannochloropsis oceanica

Overview
NameNO07G04460
Unique NameNO07G04460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1132
Alignment locationchr7:1253288..1254419 +

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Properties
Property NameValue
Description23S rRNA (Adenine2503-C2)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1253288..1254419 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
Homology
BLAST of NO07G04460 vs. NCBI_GenBank
Match: PKA64601.1 (23S rRNA (adenine2503-C2)-methyltransferase [Apostasia shenzhenica])

HSP 1 Score: 175.3 bits (443), Expect = 2.200e-40
Identity = 96/200 (48.00%), Postives = 129/200 (64.50%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVGDL 201
            MGEP  N DNVMKA++IL +++G L   P ++TVST GLVP I RF+ ES C LAVSL+ATTDE+R+  MPINRRY L   LL +L         E  R              V  EYVM+ GVND+ EDA RL  +  G+ C +NLI FN H G++F+P+S++K+  FR++L + G +  LR S+G ++M ACGQ+G+L
Sbjct:  160 MGEPLQNIDNVMKAVAILIDEQG-LHFSPRKVTVSTSGLVPQIRRFLRESNCSLAVSLNATTDEVRNQIMPINRRYNLGL-LLETLRE-------EVDRKHKYI---------VLFEYVMLAGVNDSMEDARRLIELVRGIPCKINLISFNPHHGSIFMPTSEEKMIEFRNVLAEAGCIVFLRLSRGNDQMAACGQLGEL 341          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: PNW87105.1 (hypothetical protein CHLRE_02g109250v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 168.7 bits (426), Expect = 2.100e-38
Identity = 98/203 (48.28%), Postives = 123/203 (60.59%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVGDLAMA 204
            MGEP  NYD VM A+ IL      L L  N+I VSTVGLVP + RF+   R  LAVSLHATTDE+R   +P NRRYPL   LL +L   FP      G+              V +EYV++ GVNDT  DAERL A+T  + C+VNLI FN H+G  F  SS D ++ FR++    GR  T+R SKG +EM ACGQ+GD+ ++
Sbjct:  281 MGEPLHNYDAVMSAIEILAT---GLELSRNKIIVSTVGLVPEMRRFIASGRAKLAVSLHATTDEVRDWIVPTNRRYPL-DQLLGALREAFPY-----GKRKGDDF--------VVIEYVLLAGVNDTLADAERLLALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLAAGRPCTVRASKGDDEMAACGQLGDVNLS 466          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: XP_006844954.1 (uncharacterized protein LOC18434828 isoform X2 [Amborella trichopoda] >ERN06629.1 hypothetical protein AMTR_s00058p00171240 [Amborella trichopoda])

HSP 1 Score: 167.5 bits (423), Expect = 4.600e-38
Identity = 92/198 (46.46%), Postives = 128/198 (64.65%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVG 199
            MGEP  N DNV+KA +I+ +++G L   P ++TVST GLVP + RF++ES C LAVSL+ATTDE+R+  MPINR+Y LA  LL +L         +E R              V  EYVM+ GVND+ EDA+RLAA+  G+ C +NLI FN H G+ F P+S +++  FR+ L   G +  +R+S+G ++M ACGQ+G
Sbjct:  218 MGEPLHNIDNVLKASAIMVDEQG-LYFSPRKVTVSTSGLVPQLKRFLQESSCALAVSLNATTDEVRNWIMPINRKYNLA-RLLDTLR--------DELRFKHNY--------KVLFEYVMLAGVNDSMEDAKRLAALVNGVPCKINLITFNPHSGSEFEPTSDEQMVEFRNTLASEGCIVFMRQSRGDDKMAACGQLG 397          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: XP_010533939.1 (PREDICTED: uncharacterized protein LOC104809600 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 167.5 bits (423), Expect = 4.600e-38
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVGDL 201
            MGEPF N +NV++A +I+ + +G L   P ++TVST GLVP + RF+ ES C LAVSL+ATTDE+R+  MPINR+Y LA  LL +L         EE R              V  EYVM+ GVND+ +DAERL  +   + C +NLI+FN H G+ F+P+++DKI  FR+IL + G    LR S+G ++M ACGQ+G L
Sbjct:  255 MGEPFHNIENVIRAANIMVDDQG-LHFSPRKVTVSTSGLVPQLKRFLRESTCALAVSLNATTDEVRNWIMPINRKYKLAV-LLETLR--------EELRSKNNY--------KVLFEYVMLAGVNDSMDDAERLIELVRDIPCKINLIQFNPHSGSQFIPTAEDKIIKFRNILAQGGCTVFLRLSRGNDQMAACGQLGML 436          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: XP_020523297.1 (uncharacterized protein LOC18434828 isoform X1 [Amborella trichopoda])

HSP 1 Score: 167.5 bits (423), Expect = 4.600e-38
Identity = 92/198 (46.46%), Postives = 128/198 (64.65%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVG 199
            MGEP  N DNV+KA +I+ +++G L   P ++TVST GLVP + RF++ES C LAVSL+ATTDE+R+  MPINR+Y LA  LL +L         +E R              V  EYVM+ GVND+ EDA+RLAA+  G+ C +NLI FN H G+ F P+S +++  FR+ L   G +  +R+S+G ++M ACGQ+G
Sbjct:  234 MGEPLHNIDNVLKASAIMVDEQG-LYFSPRKVTVSTSGLVPQLKRFLQESSCALAVSLNATTDEVRNWIMPINRKYNLA-RLLDTLR--------DELRFKHNY--------KVLFEYVMLAGVNDSMEDAKRLAALVNGVPCKINLITFNPHSGSEFEPTSDEQMVEFRNTLASEGCIVFMRQSRGDDKMAACGQLG 413          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: NP_564755.1 (Radical SAM superfamily protein [Arabidopsis thaliana] >AAK96886.1 Unknown protein [Arabidopsis thaliana] >AAM10038.1 unknown protein [Arabidopsis thaliana] >AEE33668.1 Radical SAM superfamily protein [Arabidopsis thaliana])

HSP 1 Score: 166.8 bits (421), Expect = 7.800e-38
Identity = 91/198 (45.96%), Postives = 125/198 (63.13%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVG 199
            MGEPF N DNV+KA +I+ ++ G L   P ++TVST GLVP + RF+ ES C LAVSL+ATTDE+R+  MPINR+Y L  SLL        L  L EG               V  EYVM+ GVND+ +DA RL  + +G+ C +NLI+FN H G+ F+ + +DK+  FR++L + G    +R S+G ++M ACGQ+G
Sbjct:  255 MGEPFHNIDNVIKAANIMVDENG-LHFSPRKVTVSTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKL--SLL--------LETLREGLSSRHKY-------KVLFEYVMLAGVNDSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAACGQLG 434          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: XP_002886632.1 (uncharacterized protein LOC9322698 [Arabidopsis lyrata subsp. lyrata] >EFH62891.1 radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 166.8 bits (421), Expect = 7.800e-38
Identity = 91/198 (45.96%), Postives = 125/198 (63.13%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVG 199
            MGEPF N DNV+KA +I+ ++ G L   P ++TVST GLVP + RF+ ES C LAVSL+ATTDE+R+  MPINR+Y L  SLL        L  L EG               V  EYVM+ GVND+ +DA RL  + +G+ C +NLI+FN H G+ F+ + +DK+  FR++L + G    +R S+G ++M ACGQ+G
Sbjct:  255 MGEPFHNIDNVIKAANIMVDENG-LHFSPRKVTVSTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKL--SLL--------LETLREGLSSKHKY-------KVLFEYVMLAGVNDSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAACGQLG 434          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: AAC24056.1 (Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE intergenic region gb|493519 from E. coli sequence gb|U02965 [Arabidopsis thaliana])

HSP 1 Score: 166.8 bits (421), Expect = 7.800e-38
Identity = 91/198 (45.96%), Postives = 125/198 (63.13%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVG 199
            MGEPF N DNV+KA +I+ ++ G L   P ++TVST GLVP + RF+ ES C LAVSL+ATTDE+R+  MPINR+Y L  SLL        L  L EG               V  EYVM+ GVND+ +DA RL  + +G+ C +NLI+FN H G+ F+ + +DK+  FR++L + G    +R S+G ++M ACGQ+G
Sbjct:  251 MGEPFHNIDNVIKAANIMVDENG-LHFSPRKVTVSTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKL--SLL--------LETLREGLSSRHKY-------KVLFEYVMLAGVNDSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAACGQLG 430          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: OAP18277.1 (hypothetical protein AXX17_AT1G53310 [Arabidopsis thaliana])

HSP 1 Score: 166.8 bits (421), Expect = 7.800e-38
Identity = 91/198 (45.96%), Postives = 125/198 (63.13%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVG 199
            MGEPF N DNV+KA +I+ ++ G L   P ++TVST GLVP + RF+ ES C LAVSL+ATTDE+R+  MPINR+Y L  SLL        L  L EG               V  EYVM+ GVND+ +DA RL  + +G+ C +NLI+FN H G+ F+ + +DK+  FR++L + G    +R S+G ++M ACGQ+G
Sbjct:  256 MGEPFHNIDNVIKAANIMVDENG-LHFSPRKVTVSTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKL--SLL--------LETLREGLSSRHKY-------KVLFEYVMLAGVNDSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAACGQLG 435          
BLAST of NO07G04460 vs. NCBI_GenBank
Match: XP_020584953.1 (uncharacterized protein LOC110027751 isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 166.4 bits (420), Expect = 1.000e-37
Identity = 94/198 (47.47%), Postives = 127/198 (64.14%), Query Frame = 0
Query:    1 MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEESRCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRXXXXXXXXXXXXGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEFNTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVG 199
            MGEPF N DNV+KA +I+ +++G L   P ++TVST GLVP + RF++ES C LAVSL+ATTDE+R+  MPINR+Y L+  LL +L         EE R              V  EYVM+EGVND+ EDA RL  +   + C +NLI FN H G++F P+S DK+  FR++L + G +  LR S+G + M ACGQ+G
Sbjct:  215 MGEPFHNIDNVIKAAAIMVDEQG-LHFSPRKVTVSTSGLVPQLKRFLKESNCALAVSLNATTDEVRNWVMPINRKYNLSL-LLETLR--------EEIRFKHKY--------KVLFEYVMLEGVNDSIEDARRLVELVRDIPCKINLISFNPHCGSLFKPTSDDKMIEFRNVLAEAGCVVFLRLSRGDDRMAACGQLG 394          
The following BLAST results are available for this feature:
BLAST of NO07G04460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PKA64601.12.200e-4048.0023S rRNA (adenine2503-C2)-methyltransferase [Apost... [more]
PNW87105.12.100e-3848.28hypothetical protein CHLRE_02g109250v5 [Chlamydomo... [more]
XP_006844954.14.600e-3846.46uncharacterized protein LOC18434828 isoform X2 [Am... [more]
XP_010533939.14.600e-3847.00PREDICTED: uncharacterized protein LOC104809600 is... [more]
XP_020523297.14.600e-3846.46uncharacterized protein LOC18434828 isoform X1 [Am... [more]
NP_564755.17.800e-3845.96Radical SAM superfamily protein [Arabidopsis thali... [more]
XP_002886632.17.800e-3845.96uncharacterized protein LOC9322698 [Arabidopsis ly... [more]
AAC24056.17.800e-3845.96Contains similarity to hypothetical 43.1 KD protei... [more]
OAP18277.17.800e-3845.96hypothetical protein AXX17_AT1G53310 [Arabidopsis ... [more]
XP_020584953.11.000e-3747.47uncharacterized protein LOC110027751 isoform X1 [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL104nonsL104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008421NSK008421Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04460.1NO07G04460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581626gene_2796Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04460.1NO07G04460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04460 ID=NO07G04460|Name=NO07G04460|organism=Nannochloropsis oceanica|type=gene|length=1132bp
ATGGGGGAGCCCTTTGATAATTATGATAATGTGATGAAGgtacgtacggg
aggagagggagggagggaggagagggagggaggggagagaggaacgagga
ccgagtcgcccaagaaagaagttcgcggatgcgcactacggcaagtgcaa
agagccaaataaatctaccaaccacactgtccctcccttcctccctccct
cccttcgatccctccagGCCCTCTCCATCCTGACTGAGCAGAGGGGGAAG
CTCCTCCTGGGGCCTAATCAAATCACTGTCTCCACCGTGGGTCTCGTACC
CTTAATCGACCGGTTTGTGGAGGAGAGCCGGTGCATGCTAGCGGTATCGT
TGCATGCCACGACTGATGAGgtgcatggagggagggagggagggagggag
ggagggagagagggagggagggagggaaaaaccttagccgctgcaacact
ttctcggacactctcccgaacctcctcctgtccatccatccctccctgct
tccctcagATTCGCAGCTCCTTCATGCCGATCAACCGTCGGTATCCTCTG
GCCACCTCCCTCCTTCCCTCCCTCCATGCCCATTTCCCCCTGCCTGTCCT
CGAGGAGGGGAGGGAGGGGAGGGCGGGACGGAGGACGAGGAGGAGGAGGG
GACCCGTGGCGCTGGAGTACGTGATGATGGAGGGGGTGAACGACACGGAG
GAGGACGCAGAGCGACTGGCGGCCATGACGGAGGGCATGGACTGTGTGGT
TAATTTGATTGAGTTCAACACGCATGAGGgtaggttggcgagggagggag
gagggagggagggagggaggcctgacaaagaggaagatagagacgataga
tgatatattcttctcttgttgcacccaggcccttacacacttcctccttc
cctcccttattatctccccccagGCGCAGTCTTCCTCCCTTCCTCCAAAG
ACAAAATTCAAACTTTCCGCAGCATCCTCAAGAAGCATGGCCGCTTATCC
ACCCTGCGAGAAAGCAAAGGGGCCGAGGAGATGGGGGCCTGTGGACAGGT
GGGCGATCTGGCCATGGCGCGAAAGTTCAAGTCCAAGGGGGGGAGGAGGG
ACGGGAGGGAGGGAGGTAAGGAGGGAATGTAG
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protein sequence of NO07G04460.1

>NO07G04460.1-protein ID=NO07G04460.1-protein|Name=NO07G04460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MGEPFDNYDNVMKALSILTEQRGKLLLGPNQITVSTVGLVPLIDRFVEES
RCMLAVSLHATTDEIRSSFMPINRRYPLATSLLPSLHAHFPLPVLEEGRE
GRAGRRTRRRRGPVALEYVMMEGVNDTEEDAERLAAMTEGMDCVVNLIEF
NTHEGAVFLPSSKDKIQTFRSILKKHGRLSTLRESKGAEEMGACGQVGDL
AMARKFKSKGGRRDGREGGKEGM*
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Synonyms
Publications