NO07G04450, NO07G04450 (gene) Nannochloropsis oceanica

Overview
NameNO07G04450
Unique NameNO07G04450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr7:1252461..1253168 +

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Properties
Property NameValue
DescriptionDual-specificity RNA methyltransferase RlmN
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1252461..1253168 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0051536iron-sulfur cluster binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
Homology
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: XP_002957357.1 (hypothetical protein VOLCADRAFT_42666 [Volvox carteri f. nagariensis] >EFJ41566.1 hypothetical protein VOLCADRAFT_42666, partial [Volvox carteri f. nagariensis])

HSP 1 Score: 73.6 bits (179), Expect = 9.500e-10
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:  171 GLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            GL+L  +  A DGT+KLV  +T G A G +VE+VLIP+VR      R T+CVSSQ GCAM+C FC
Sbjct:    2 GLRLSQVARAADGTRKLVFTLTEGEAAGGSVETVLIPIVRQQGLRDRLTICVSSQVGCAMNCQFC 66
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: WP_075106324.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Psychrobacter sp. C 20.9] >OLF37251.1 23S rRNA (adenine(2503)-C(2))-methyltransferase [Psychrobacter sp. C 20.9])

HSP 1 Score: 73.6 bits (179), Expect = 9.500e-10
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            PT L  S++ V EA  K  L GM+ A ++    + +IG  P  ++  V KW+Y   +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PTKLTDSIKLVDEAHAKTNLLGMTQAQLSDY--FKSIGEKP-FRATQVIKWIYQHGV----TDFEQMTNLSKSLRDKLSLNACVVPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKLNGRKTLCVSSQVGCALDCSFC 149
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: WP_010199027.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Psychrobacter sp. PAMC 21119])

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-9
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            PT L  S++ V EA  K  L GM+ A +     + +IG  P  +S  V +W+Y + +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PTKLTDSIKLVDEAQAKTNLLGMTQAQLAEY--FKSIGEKP-FRSTQVVRWIYQQGV----TDFEQMTNLSKSLRDKLSANACVVPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKINGRKTLCVSSQVGCALDCSFC 149
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: PRW50794.1 (Dual-specificity RNA methyltransferase [Chlorella sorokiniana])

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-9
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 0 
Query:  167 TLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            TL+ GL L  I  A DGT+K+V ++  GPA G  VE+VLIP+ R      R TLCVSSQ GC M C FC
Sbjct:  164 TLDGGLLLQSIHSAADGTRKMVFKVAHGPAAGGQVETVLIPITREAGAKARITLCVSSQVGCDMGCQFC 232
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: GAF54445.1 (LOW QUALITY PROTEIN: ribosomal RNA large subunit methyltransferase N [Psychrobacter sp. JCM 18901])

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-9
Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            P  +  S++ V EA  K  L GM+ A +     + +IG  P  +S  V KW+Y   +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PAKITDSIKLVDEAHAKTNLLGMTQAQLADY--FKSIGEKP-FRSTQVIKWIYQHGV----TDFEQMTNLSKSLRDKLSLNACVVPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKLNGRKTLCVSSQVGCALDCSFC 149
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: WP_025650585.1 (MULTISPECIES: 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Psychrobacter] >PKG35421.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Psychrobacter sp. Sarcosine-3u-12])

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-9
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            PT  + S++ V EA  K  L GM+ A +     + +IG  P  ++  V KW+Y   +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PTKPMSSIKLVDEAQAKTNLLGMTQAQLADY--FKSIGEKP-FRATQVVKWIYQHGV----TDFEQMTNLSKSLRDKLSANACVVPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKVNGRKTLCVSSQVGCALDCSFC 149
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: WP_057759033.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Psychrobacter sp. P11G3] >KRG36334.1 23S rRNA (adenine(2503)-C2)-methyltransferase [Psychrobacter sp. P11G3] >OEH68472.1 23S rRNA (adenine(2503)-C(2))-methyltransferase [Psychrobacter sp. B29-1])

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-9
Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            P  +  S++ V EA  K  L GM+ A +     + +IG  P  +S  V KW+Y   +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PAKITDSIKLVDEAHAKTNLLGMTQAQLADY--FKSIGEKP-FRSTQVIKWIYQHGV----TDFEQMTNLSKSLRDKLSLNACVVPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKLNGRKTLCVSSQVGCALDCSFC 149
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: GAF53898.1 (ribosomal RNA large subunit methyltransferase N [Psychrobacter sp. JCM 18900])

HSP 1 Score: 71.2 bits (173), Expect = 4.700e-9
Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            P  +  S++ V EA  K  L GM+ A +     + +IG  P  +S  V KW+Y   +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PAKITDSIKLVDEAHAKTNLLGMTQAQLADY--FKSIGEKP-FRSTQVIKWIYQHGV----TDFEQMTNLSKSLRDKLSLNACVIPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKLNGRKTLCVSSQVGCALDCSFC 149
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: WP_058025094.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Psychrobacter piscatorii] >KRU22159.1 23S rRNA (adenine(2503)-C2)-methyltransferase [Psychrobacter piscatorii])

HSP 1 Score: 71.2 bits (173), Expect = 4.700e-9
Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            PT    S++ V EA  K  L GM+ + +     + +IG  P  +S  V KW+Y   +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PTNKTASIKIVDEAQAKTNLLGMTQSQLADY--FKSIGEKP-FRSTQVIKWIYQHGV----TDFEQMTNLSKSLRDKLSANACVTPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKLNGRKTLCVSSQVGCALDCSFC 149
[Close]
BLAST of NO07G04450 vs. NCBI_GenBank
Match: SDE13026.1 (23S rRNA m(2)A-2503 methyltransferase [Psychrobacter pacificensis])

HSP 1 Score: 71.2 bits (173), Expect = 4.700e-9
Identity = 53/159 (33.33%), Postives = 81/159 (50.94%), Query Frame = 0 
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            PT    S++ V EA  K  L GM+ + +     + +IG  P  +S  V KW+Y   +    + FE +++ + +    LS   C+            K+I  +++ DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PTNKTASIKIVDEAQAKTNLLGMTQSQLADY--FKSIGEKP-FRSTQVIKWIYQHGV----TDFEQMTNLSKSLRDKLSANACVTPP---------KVIHRQYSDDGTRKWVFEVTG----GSLVETVLIP-ADDSKLNGRKTLCVSSQVGCALDCSFC 149
The following BLAST results are available for this feature:
BLAST of NO07G04450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002957357.19.500e-1055.38hypothetical protein VOLCADRAFT_42666 [Volvox cart... [more]
WP_075106324.19.500e-1033.9623S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
WP_010199027.11.200e-933.9623S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
PRW50794.12.100e-953.62Dual-specificity RNA methyltransferase [Chlorella ... [more]
GAF54445.13.600e-933.33LOW QUALITY PROTEIN: ribosomal RNA large subunit m... [more]
WP_025650585.13.600e-933.33MULTISPECIES: 23S rRNA (adenine(2503)-C(2))-methyl... [more]
WP_057759033.13.600e-933.3323S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
GAF53898.14.700e-933.33ribosomal RNA large subunit methyltransferase N [P... [more]
WP_058025094.14.700e-933.3323S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
SDE13026.14.700e-933.3323S rRNA m(2)A-2503 methyltransferase [Psychrobact... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04450.1NO07G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04450.1NO07G04450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04450 ID=NO07G04450|Name=NO07G04450|organism=Nannochloropsis oceanica|type=gene|length=708bp
ATGGTGGGGACTTACCCACCACCCTCCATCGTCGGCCTGCTTACCCTGCT
ACTCTTGCCGCCCTCCACCATCGTCCACGCTTTTCATCCTCTTCTCTACC
ATCATGGCAACTACCTGACCTTTCCACGCGCCACTCCCCTCCCCGCTACT
GCCCTCAATCCCCTGGTGTCCTCTCTCTCTCCCTCCTTCGCCTCCCCGCA
ACTGCCCACCCTCCCCCTCCTCCCCCTTCCCACAACCCTCCTCCCCTCCG
TCGAACGCGTCTCCGAAGCTGGGGGCAAGCTTCGGCTCCGCGGTATGTCC
CTTGCGGACATCACCATCCTCCTGACGTACCTCAATATTGGACCCAATCC
CGAGGTCAAGTCCGCCGCCGTCTTCAAATGGCTCTATCACAGAGACCTCA
TGGTCCATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCT
GCCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTAC
ATTGGAAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGA
CGAAGAAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCA
GTCGAGTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACG
CTACACGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCT
TCTGTTAG
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protein sequence of NO07G04450.1

>NO07G04450.1-protein ID=NO07G04450.1-protein|Name=NO07G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MVGTYPPPSIVGLLTLLLLPPSTIVHAFHPLLYHHGNYLTFPRATPLPAT
ALNPLVSSLSPSFASPQLPTLPLLPLPTTLLPSVERVSEAGGKLRLRGMS
LADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTA
ACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKA
VESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC*
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Synonyms
Publications