NO07G04450, NO07G04450 (gene) Nannochloropsis oceanica

Overview
NameNO07G04450
Unique NameNO07G04450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr7:1252461..1253168 +

Link to JBrowse

Properties
Property NameValue
DescriptionDual-specificity RNA methyltransferase RlmN
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1252461..1253168 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0051536iron-sulfur cluster binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
Homology
BLAST of NO07G04450 vs. NCBI_GenBank
Match: CBN74666.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.6 bits (231), Expect = 8.800e-16
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 0
Query:  161 ALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            A+    T + GL+L D++ A DGT+KLV  +TSG   GK VE+V+IPM+RGPQ+ PRYT+CVSSQ GCAM+C FC
Sbjct:  175 AVREVATADGGLELEDVQLAADGTRKLVSVLTSGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMNCQFC 249          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: PSC75760.1 (E3 ubiquitin-ligase synoviolin [Micractinium conductrix])

HSP 1 Score: 85.9 bits (211), Expect = 1.800e-13
Identity = 53/151 (35.10%), Postives = 83/151 (54.97%), Query Frame = 0
Query:   85 ERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            E   +A G+L L+ ++L  +       +IG +   ++  +++++Y+    +      A+    N      SR +   L    T++ GL+L  I  A DGT+K+V ++ +GPA G  VE+VLIP+VR     PR TLCVSSQ GCAM+C FC
Sbjct:  626 ESYYDAEGRLVLKNLTLPQLEEWCG--SIGEDGPRRAMQIWRFMYYDRRWIRSFEDAAVEHTQNG----FSRAIRAKLAPLATVDGGLQLQSIHAAGDGTRKMVFRLANGPAAGGQVETVLIPVVREQGSKPRITLCVSSQVGCAMNCQFC 770          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: KXZ47632.1 (hypothetical protein GPECTOR_34g791 [Gonium pectorale])

HSP 1 Score: 81.6 bits (200), Expect = 3.500e-12
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 0
Query:   89 EAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVH--HSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            +A G+L L+ ++L ++          P P  ++  +++W+Y          S+ E L      +A  + R     +    TL+ GL L  +  A DGT+KLV  +T GPA G ++E+VLIP+VR      R T+CVSSQ GCAM+C FC
Sbjct:   36 DAEGRLVLKALTLPELEAWCA-AEGEPAPANRALQLWRWMYADPPAGSWLRSLEETLGRQNGFSAKFIER-----VSPRVTLDGGLVLQQVVRASDGTRKLVFGLTGGPAAGGSIEAVLIPVVRRAGLRDRLTICVSSQVGCAMNCQFC 178          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: GAX81183.1 (hypothetical protein CEUSTIGMA_g8616.t1 [Chlamydomonas eustigma])

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0
Query:  167 TLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            T+  GL+L ++  AKDGT+K+  ++T GPAKG  +E+VLIP+VR   Q  R T+C+S+Q GCAM+C FC
Sbjct:   88 TVSGGLELKEVVTAKDGTRKMAFKLTEGPAKGGVIETVLIPVVREAGQRCRITICLSTQVGCAMNCQFC 156          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: PNW83667.1 (hypothetical protein CHLRE_05g238500v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 77.0 bits (188), Expect = 8.600e-11
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query:  167 TLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRG------PQQAPRYTLCVSSQSGCAMDCAFC 236
            TL+ GL L ++  A DGT+KLV ++T G A G  +E+VLIP  R        Q+ PRYTLCVSSQ GCAM+C FC
Sbjct:  250 TLDGGLALQEVVPAADGTRKLVFRVTGGEAAGGRIETVLIPWYRDFDRRQQLQERPRYTLCVSSQVGCAMNCQFC 324          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: XP_013897205.1 (ribosomal RNA large subunit methyltransferase N [Monoraphidium neglectum] >KIY98185.1 ribosomal RNA large subunit methyltransferase N [Monoraphidium neglectum])

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 0
Query:  155 SRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQS------------GCAMDCAFC 236
            S + C       TL+ G++L  +  AKDGT+KLV ++T G  KG +VE+VLIP++R     PR TLCVSSQ             GCAM C FC
Sbjct:   52 SEKFCEKFRQLATLDGGVRLTSVARAKDGTRKLVFELTEGEGKGGSVEAVLIPVMREAGSKPRITLCVSSQGKRRWQIKEEGAVGCAMACQFC 144          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: PNW86443.1 (hypothetical protein CHLRE_02g086550v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 75.5 bits (184), Expect = 2.500e-10
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 0
Query:  167 TLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            +LE GLKL  +  A DGT+KLV  +  G A G ++E+VLIP+VR      R T+CVSSQ GCAM+C FC
Sbjct:  173 SLEGGLKLSQVVRASDGTRKLVFTLLGGEAAGGSIETVLIPVVRQQGLRDRLTICVSSQVGCAMNCQFC 241          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: WP_021813557.1 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Psychrobacter aquaticus] >ERL56226.1 Ribosomal RNA large subunit methyltransferase N [Psychrobacter aquaticus CMS 56])

HSP 1 Score: 74.3 bits (181), Expect = 5.600e-10
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 0
Query:   77 PTTLLPSVERVSEAGGKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            P  +  S++ V EA  K  L GM+ A +T    + +IG  P  +S  V KW+Y   +    + FE +++ + +    LS   C+            K+I  ++++DGT+K V ++T     G  VE+VLIP     +   R TLCVSSQ GCA+DC+FC
Sbjct:   12 PAKITDSIKLVDEAHAKTNLLGMTQAQLTDY--FKSIGEKP-FRSTQVIKWIYQHGV----TDFEQMTNLSKSLRDKLSLNACVVPP---------KVIHRQYSEDGTRKWVFEVTG----GSLVETVLIP-ADDSKVNGRKTLCVSSQVGCALDCSFC 149          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: XP_011401162.1 (Dual-specificity RNA methyltransferase RlmN [Auxenochlorella protothecoides] >KFM28150.1 Dual-specificity RNA methyltransferase RlmN [Auxenochlorella protothecoides])

HSP 1 Score: 74.3 bits (181), Expect = 5.600e-10
Identity = 47/144 (32.64%), Postives = 78/144 (54.17%), Query Frame = 0
Query:   92 GKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            G+L L+ ++L  ++  +    +G  P  +   +++ LYH   ++   +   + +P   +A  + R     L    +L  G+++  +  A DGT+KL  ++T+GPA G  VE VLIPM   P   PR T+C+SSQ GCA +C FC
Sbjct:   23 GRLMLKNLTLEQLSDWVV-AALG-EPRSRGMQLWRALYHSWPLL-EDLRPTIGTPNGFSAAFVDR-----LTRVASLGGGMEVAGVSTAPDGTQKLACRLTTGPAAGMEVECVLIPM---PGSKPRMTVCISSQVGCAQNCQFC 155          
BLAST of NO07G04450 vs. NCBI_GenBank
Match: GAX77170.1 (hypothetical protein CEUSTIGMA_g4615.t1 [Chlamydomonas eustigma])

HSP 1 Score: 74.3 bits (181), Expect = 5.600e-10
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   92 GKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTAACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGK-AVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            G+L LR ++L ++   L  +++G  P  ++  +F+WLY ++  +         S A       S+     +  + +L  GL L  ++ A+DGTKKLV  +  G       VE+VLIPM        RYT C+S+Q GCAM+C FC
Sbjct:   95 GRLMLRNLTLQELQEWL--ISVGERPN-RAEQLFRWLYGKNAWIRD------ISEAKDNGFAFSKVFKEKVITSASLSGGLTLQSVRTAQDGTKKLVFALNQGEGSAMGTVETVLIPMPNKNGINSRYTACLSTQVGCAMNCQFC 230          
The following BLAST results are available for this feature:
BLAST of NO07G04450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74666.18.800e-1658.67conserved unknown protein [Ectocarpus siliculosus][more]
PSC75760.11.800e-1335.10E3 ubiquitin-ligase synoviolin [Micractinium condu... [more]
KXZ47632.13.500e-1234.90hypothetical protein GPECTOR_34g791 [Gonium pector... [more]
GAX81183.11.700e-1152.17hypothetical protein CEUSTIGMA_g8616.t1 [Chlamydom... [more]
PNW83667.18.600e-1153.33hypothetical protein CHLRE_05g238500v5 [Chlamydomo... [more]
XP_013897205.11.100e-1044.09ribosomal RNA large subunit methyltransferase N [M... [more]
PNW86443.12.500e-1053.62hypothetical protein CHLRE_02g086550v5 [Chlamydomo... [more]
WP_021813557.15.600e-1033.9623S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]
XP_011401162.15.600e-1032.64Dual-specificity RNA methyltransferase RlmN [Auxen... [more]
GAX77170.15.600e-1033.10hypothetical protein CEUSTIGMA_g4615.t1 [Chlamydom... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04450.1NO07G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04450.1NO07G04450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04450 ID=NO07G04450|Name=NO07G04450|organism=Nannochloropsis oceanica|type=gene|length=708bp
ATGGTGGGGACTTACCCACCACCCTCCATCGTCGGCCTGCTTACCCTGCT
ACTCTTGCCGCCCTCCACCATCGTCCACGCTTTTCATCCTCTTCTCTACC
ATCATGGCAACTACCTGACCTTTCCACGCGCCACTCCCCTCCCCGCTACT
GCCCTCAATCCCCTGGTGTCCTCTCTCTCTCCCTCCTTCGCCTCCCCGCA
ACTGCCCACCCTCCCCCTCCTCCCCCTTCCCACAACCCTCCTCCCCTCCG
TCGAACGCGTCTCCGAAGCTGGGGGCAAGCTTCGGCTCCGCGGTATGTCC
CTTGCGGACATCACCATCCTCCTGACGTACCTCAATATTGGACCCAATCC
CGAGGTCAAGTCCGCCGCCGTCTTCAAATGGCTCTATCACAGAGACCTCA
TGGTCCATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCT
GCCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTAC
ATTGGAAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGA
CGAAGAAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCA
GTCGAGTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACG
CTACACGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCT
TCTGTTAG
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protein sequence of NO07G04450.1

>NO07G04450.1-protein ID=NO07G04450.1-protein|Name=NO07G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MVGTYPPPSIVGLLTLLLLPPSTIVHAFHPLLYHHGNYLTFPRATPLPAT
ALNPLVSSLSPSFASPQLPTLPLLPLPTTLLPSVERVSEAGGKLRLRGMS
LADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTA
ACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKA
VESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC*
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Synonyms
Publications