NO07G04410, NO07G04410 (gene) Nannochloropsis oceanica

Overview
NameNO07G04410
Unique NameNO07G04410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2300
Alignment locationchr7:1233205..1235504 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1233205..1235504 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G04410 vs. NCBI_GenBank
Match: EWM28936.1 (hypothetical protein Naga_100511g5 [Nannochloropsis gaditana])

HSP 1 Score: 364.8 bits (935), Expect = 4.300e-97
Identity = 174/189 (92.06%), Postives = 182/189 (96.30%), Query Frame = 0 
Query:  299 KARKWLHEPGARISACFTSLGDRREKGADLYVRIAELYRSTYPQDNVTFYGIGNVIPAVDMVVFDPMPQQQLDAFYRDEVDIIFNLERTQYRNGWPLGVEGLLMGLVLFTTDAYNLNDRNGFNFGSEVTIVTEGREDLTVEAIHRYTLNRHLLLEHSMRGQDRAWEMFGHDRQMGVIISEVGRRIKATS 488
            KARK LHEPGARISACFTSLG+ REKGADLY RIAELYRSTYPQDNVTFYGIGNVI A DMVVFDPMPQQQLDAFYRDEVDIIFNLERTQYRNGWPLG EGLLMGLVLFTTDAYNLN+RNGFNFG+EVTIVTEGRE+LTVEAIHRYT+NRHLLLEHSMRGQDRAWE+FGHDRQMGVI+SEVGRR+ ATS
Sbjct:   10 KARKRLHEPGARISACFTSLGNTREKGADLYARIAELYRSTYPQDNVTFYGIGNVISAGDMVVFDPMPQQQLDAFYRDEVDIIFNLERTQYRNGWPLGTEGLLMGLVLFTTDAYNLNERNGFNFGTEVTIVTEGRENLTVEAIHRYTVNRHLLLEHSMRGQDRAWEIFGHDRQMGVILSEVGRRMNATS 198
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BLAST of NO07G04410 vs. NCBI_GenBank
Match: WP_053288535.1 (hypothetical protein [Aeromonas caviae] >KOG92389.1 hypothetical protein AL345_13260 [Aeromonas caviae])

HSP 1 Score: 77.0 bits (188), Expect = 1.800e-10
Identity = 48/164 (29.27%), Postives = 80/164 (48.78%), Query Frame = 0 
Query:  318 LGDRREKGADLYVRIAELYRSTYPQDNVTFYGIGNVIPAVDMVV-FDPMPQQQLDAFYRDEVDIIFNLERTQYRNGWPLGVEGLLMGLVLFTTDAYNLNDRNGFNFGSEVTIVTE-GREDLTVEAIHRYTLNRHLLLEHSMRGQDRAWEMFGHDRQMGVIISEV 480
            +G   EKG + Y  I   Y+  Y  D V F  I ++ P  D +  + PM  ++L  FYR  VD+I +++     +GWPLG+E +L G+ L TTD +    R  +    +   V +  + D  V  IH    +R  L   S++GQ   +++  +  Q  +I + +
Sbjct:    1 MGHAAEKGDEQYRWIVNAYKERYLHDGVDFLSI-SIYPLSDNIKNYMPMSMKELTDFYRHNVDLIISIDTGLAFHGWPLGLEAVLTGVALATTDPHKW--REMYEISDDAIFVFDVDKLDSVVSFIHELYFDRDYLHAISIKGQAEFYKLCCYSSQQEMIFNYI 161
The following BLAST results are available for this feature:
BLAST of NO07G04410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28936.14.300e-9792.06hypothetical protein Naga_100511g5 [Nannochloropsi... [more]
WP_053288535.11.800e-1029.27hypothetical protein [Aeromonas caviae] >KOG92389.... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04410.1NO07G04410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581613gene_2789Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04410.1NO07G04410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04410 ID=NO07G04410|Name=NO07G04410|organism=Nannochloropsis oceanica|type=gene|length=2300bp
GGAGGGTGGAGGTTGATGTTGATGATGACGCATTGAAAATATGGGCATTG
GCCTTAGCATCCAAAATATGGGCCATGGCCTTCACAACACACAACACACG
CCTTGCAACGTGCTACTCCTCTCCTCCTCCTCCCATACTATCCCTACCAT
ACCATACAAGTCTTCTTCCCCTTCCATTTGTTGAAGCTTTCCTATGTTGT
TGCATTCTTTGCCAAGTGGGATGCGTCTCGATGCAGCATCATCATCATCA
TCAAAAAAGAAACAAAAAATAACCTCCGAAACGGGCTCTTTTTCACCTGG
TCTTCCCCTGCTTCTTCACACACCACGCACCATTACATAAGTCACTCCCC
CAGGTGTGCACCTGGCGTACATGCCCCCCCTTTACTTTATCCTTTATATG
ACTCCATCCCTCTCTTTTCCTATGACTCACACAACAAATACACACCCCTG
CTTGCCCATAGGGCGGGTGTTTAGATTAAAATTCATCACAAGCCCACTGC
ACAAAGATGAAGGACGCCCTACCTCAGCAGTCAATCACTTTCCAACTTCT
CAAAATTACAACACATGGTATTAAACGAATGAGAGCCACGGCCTCCCAAG
GCATCGCGGCGTCGTGGAGATGGAGGGCCCTCACTGCGGTAGCCGTAGTG
TCTGGAGCCCTCGCCCTGGCCGCAATGGCGCAGCTGCAGCAAGGGACGAC
GATCCTCGAAAGGGGTTGGACGGCTCCTGGAGACAGTCCGAGGGAATCTT
CTCAGCCGTCGCCTCCGCCCCGGAGCCACTGTGAGGTGATCGCCGACCCG
ACGGTCCGGCGCCCGAGGGTCCTGGTAACTGACATACTGTTCCCGACACC
CTTGTCGGCCTGGCGCTTAAATGAGCTTACTGCGTGGATGGGCGAGGTCG
ACCTGGACATCCTGGTCACTCGTCGTGCCGACGGGTTCTCCGCGGACTGG
GAGCCGATCCAAGAGAGCCACTGCCTTGCGGACTACAACGTTTTCGTGTT
CACGGAGGCCCACAGAGGATCCGTGGAGGGCATCAACTCCTTGGCCAACG
GGACCTTCGACACGTCTCCGTTCCTGGGTCACTGGCCTGCGGAGTACCTC
CTGCGTCCGCGGAAGTTCGGGACCTCATCCCCGTCGTTGAAGGACTACGA
TTGGGTCCATCACATCTTCCTCAACGCCTACGAGTTCTTCAACAAAGCGC
TTCCTGGCTACCCTCAGCGACAACAGAGCATCCACCTGTACCCCGGCGGA
CGATTCTTCATTGATCAAGAGTACACACTACCCCCCGAGGTCACCCTCTT
CACGACGCAGTCGTTCGTTCGGGATCATGCCGACAAGTGCTTTCCGAAGA
ACCCAAAGGTGGACGTCTTCGGAGGCCCCATGCTGGCCAAGGACGCGGTC
AAAGCTCGGAAGTGGCTCCACGAGCCAGGCGCCCGCATCAGCGCGTGCTT
TACATCACTGGGGGACAGGCGTGAGAAGGGTGCGGACCTTTACGTCAGGA
TCGCGGAGCTGTACCGTTCCACCTACCCTCAAGACAATGTTACCTTCTAC
GGGATCGGGAATGTGATTCCAGCCGTTGACATGGTTGTCTTCGATCCCAT
GCCTCAGCAGCAGCTGGATGCCTTCTACCGAGACGAGGTCGACATCATCT
TCAACCTCGAGCGCACGCAGTATCGCAACGGCTGGCCCCTCGGGGTGGAA
GGCTTGTTGATGGGGCTGGTCCTGTTCACGACGGACGCCTACAACCTGAA
CGACCGGAACGGGTTCAACTTCGGGTCCGAAGTCACCATTGTGACGGAGG
GGCGAGAGGATCTCACTGTGGAGGCCATCCATCGGTACACGTTGAACCGT
CACCTGCTCCTCGAGCATAGCATGCGGGGTCAGGACCGGGCGTGGGAGAT
GTTTGGGCACGACCGACAGATGGGTGTGATCATATCAGAGGTTGGGCGCC
GGATAAAGGCCACCTCAGAGCTTAGGGCAGAATAAACAATTGTCATCACA
CACACATAGATATACAAACACACCGCCAACGGTAGTTTCACCTTTTTCAA
GGACGTTGACGCCGATTAACAATTTGCGTTGCGTGATGAACGACGAGGAA
TGGATGTCAATGTAATTGTAGCTAGAAGAAGTGAAGAGCCTCGACATCAC
AGAATGAAGGGCGTCGACAAAAGGACGGTCACAGATCATAGTCATGTAGG
TATGTTGGCTCTGGTCGTTCGCAGACAAAGCGAGTATGTACCTTCTTACA
ACTTGTGTATCCATAGAAAATAAAATTTATAACTCCATTAGGGGTACCCC
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protein sequence of NO07G04410.1

>NO07G04410.1-protein ID=NO07G04410.1-protein|Name=NO07G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MKDALPQQSITFQLLKITTHGIKRMRATASQGIAASWRWRALTAVAVVSG
ALALAAMAQLQQGTTILERGWTAPGDSPRESSQPSPPPRSHCEVIADPTV
RRPRVLVTDILFPTPLSAWRLNELTAWMGEVDLDILVTRRADGFSADWEP
IQESHCLADYNVFVFTEAHRGSVEGINSLANGTFDTSPFLGHWPAEYLLR
PRKFGTSSPSLKDYDWVHHIFLNAYEFFNKALPGYPQRQQSIHLYPGGRF
FIDQEYTLPPEVTLFTTQSFVRDHADKCFPKNPKVDVFGGPMLAKDAVKA
RKWLHEPGARISACFTSLGDRREKGADLYVRIAELYRSTYPQDNVTFYGI
GNVIPAVDMVVFDPMPQQQLDAFYRDEVDIIFNLERTQYRNGWPLGVEGL
LMGLVLFTTDAYNLNDRNGFNFGSEVTIVTEGREDLTVEAIHRYTLNRHL
LLEHSMRGQDRAWEMFGHDRQMGVIISEVGRRIKATSELRAE*
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Synonyms
Publications