NO07G04370, NO07G04370 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G04370
Unique Name	NO07G04370
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	791
Alignment location	chr7:1218243..1219033 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:1218243..1219033 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 1.600e-71
Identity = 152/192 (79.17%), Postives = 153/192 (79.69%), Query Frame = 0

Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKY                                   MSEVFWKAEVERFKREVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKY------------------VQSKAAAEIARVEDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 174

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20009.1 (hypothetical protein Naga_102330g1 [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 2.100e-71
Identity = 184/199 (92.46%), Postives = 184/199 (92.46%), Query Frame = 0

Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKY-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQTEMATEIKY         XXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXMSEVFWKAEVER KREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSRAAAEIXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXXXMSEVFWKAEVERIKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 199

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 254.2 bits (648), Expect = 3.200e-64
Identity = 174/193 (90.16%), Postives = 176/193 (91.19%), Query Frame = 0

Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKY-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQTEMATEIKY           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E+FWKAEVERFKREVQLA+TQDYEPYQAALVDKRK RGGT G EEKEEEN
Sbjct:   71 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKTRGGTSGSEEKEEEN 263

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 248.4 bits (633), Expect = 1.800e-62
Identity = 160/181 (88.40%), Postives = 161/181 (88.95%), Query Frame = 0

Query:   12 HDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            H   GDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF STAHTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQ    TEIKY           XXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAAL+DKRKKRGGTGGLEEKEEEN
Sbjct:   30 HQPVGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQ----TEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEEN 206

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20119.1 (hypothetical protein Naga_101718g2 [Nannochloropsis gaditana])

HSP 1 Score: 246.9 bits (629), Expect = 5.100e-62
Identity = 175/214 (81.78%), Postives = 176/214 (82.24%), Query Frame = 0

Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKY--------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF STAHTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQTEMATEIKY                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLA+TQDYEPYQAALVDKRKKRGG  G EEKEEEN
Sbjct:   74 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIESKAAAEIXXXXXXXXXXXXXXXXXEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGISGSEEKEEEN 287

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20114.1 (hypothetical protein Naga_101734g1 [Nannochloropsis gaditana])

HSP 1 Score: 245.0 bits (624), Expect = 1.900e-61
Identity = 135/182 (74.18%), Postives = 136/182 (74.73%), Query Frame = 0

Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA EIKY                                          AEVERFKREVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:   75 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMAPEIKY------------------------------------------AEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 214

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 244.6 bits (623), Expect = 2.500e-61
Identity = 166/192 (86.46%), Postives = 168/192 (87.50%), Query Frame = 0

Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            +LA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTS+GEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ    TEIKY      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX            FKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN
Sbjct:   82 LLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ----TEIKYVQSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 269

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM19993.1 (hypothetical protein Naga_102410g1 [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 1.400e-59
Identity = 164/192 (85.42%), Postives = 165/192 (85.94%), Query Frame = 0

Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            MLA LLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRG FSSTAHTGPGTS+GEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQ    TEIKY      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX            FKREVQLAYTQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:    1 MLALLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGPFSSTAHTGPGTSNGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQ----TEIKYVQSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 188

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20041.1 (hypothetical protein Naga_102106g1 [Nannochloropsis gaditana])

HSP 1 Score: 221.1 bits (562), Expect = 3.000e-54
Identity = 167/210 (79.52%), Postives = 169/210 (80.48%), Query Frame = 0

Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKY------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF STAHTGPGTSSGEELGKKWATIFQGIGAV+GVAGATAVVVRTFDQ    TEIKY                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              REVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATIFQGIGAVVGVAGATAVVVRTFDQ----TEIKYVQSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 206

[Close]

BLAST of NO07G04370 vs. NCBI_GenBank
Match: EWM20054.1 (hypothetical protein Naga_102018g1 [Nannochloropsis gaditana])

HSP 1 Score: 211.5 bits (537), Expect = 2.400e-51
Identity = 160/200 (80.00%), Postives = 161/200 (80.50%), Query Frame = 0

Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKY------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 193
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ    TEIKY                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              REVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:   72 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ----TEIKYVQSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 267

The following BLAST results are available for this feature:

BLAST of NO07G04370 vs. NCBI_GenBank

BLAST of NO07G04370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM20057.1	1.600e-71	79.17	hypothetical protein Naga_102002g2 [Nannochloropsi...	[more]
EWM20009.1	2.100e-71	92.46	hypothetical protein Naga_102330g1 [Nannochloropsi...	[more]
EWM20060.1	3.200e-64	90.16	hypothetical protein Naga_101993g1 [Nannochloropsi...	[more]
EWM20145.1	1.800e-62	88.40	hypothetical protein Naga_101508g3 [Nannochloropsi...	[more]
EWM20119.1	5.100e-62	81.78	hypothetical protein Naga_101718g2 [Nannochloropsi...	[more]
EWM20114.1	1.900e-61	74.18	hypothetical protein Naga_101734g1 [Nannochloropsi...	[more]
EWM20066.1	2.500e-61	86.46	hypothetical protein Naga_101980g1 [Nannochloropsi...	[more]
EWM19993.1	1.400e-59	85.42	hypothetical protein Naga_102410g1 [Nannochloropsi...	[more]
EWM20041.1	3.000e-54	79.52	hypothetical protein Naga_102106g1 [Nannochloropsi...	[more]
EWM20054.1	2.400e-51	80.00	hypothetical protein Naga_102018g1 [Nannochloropsi...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR071	ncniR071	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR130	ngnoR130	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO07G04370.1	NO07G04370.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO07G04370.1	NO07G04370.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO07G04370 ID=NO07G04370|Name=NO07G04370|organism=Nannochloropsis oceanica|type=gene|length=791bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGgtgaggtggcgtgtgtgatgcatttagga
agaactcgggcttgttgatggggtgggagtgcgcgttcagtgcacgcgac
cgcagtctggccgaggcatgttgatcccccctttgtctgcgtgtctgtgt
cgtttgcgttgcaatctttgttatgcggacaagggcccgcgtcaaggtgt
tcacgcacacgcacatccatacacacccaacagGAAAGGGACGCGTGCTG
CGGGGGGGTTTCTCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGG
AGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGG
TGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAG
ACTGAGATGGCGACGGAGATCAAGTATGTCCAGAGCAAGGCGGCGGCGGA
GATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACAAGGCGGCGG
CGGAGATCGCGCGTTTGGAGGACAAGCGGACAATGTCGGAAGTGTTTTGG
AAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTACACTCA
AGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGG
GAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG

protein sequence of NO07G04370.1

>NO07G04370.1-protein ID=NO07G04370.1-protein|Name=NO07G04370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEIKYVQSKAAAEIAQAKAEIARVEDKAAAEIARLEDKRTMSEVFWKAEV
ERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN*

Synonyms

Publications