NO07G04150, NO07G04150 (gene) Nannochloropsis oceanica

Overview
NameNO07G04150
Unique NameNO07G04150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1931
Alignment locationchr7:1154627..1156557 +

Link to JBrowse

Properties
Property NameValue
DescriptionHad-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1154627..1156557 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016791phosphatase activity
GO:0016791phosphatase activity
Vocabulary: INTERPRO
TermDefinition
IPR036412HAD-like_sf
IPR010036MDP_1_eu_arc
Vocabulary: Biological Process
TermDefinition
GO:0016311dephosphorylation
Homology
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BLAST of NO07G04150 vs. NCBI_GenBank
Match: EWM26956.1 (had-like protein [Nannochloropsis gaditana])

HSP 1 Score: 161.8 bits (408), Expect = 4.400e-36
Identity = 115/289 (39.79%), Postives = 147/289 (50.87%), Query Frame = 0 
Query:  121 PPCLPRSSHCHHPRLHALLASLSSSSSTSF-------------------ELPSLIIVDLDYTLWKGNISDQLPPFAATNHPDHVHVGGVFSSXXXXXXXXXXXXXXXPTLFRLFPETREVLGALHRTRTVTLAIASRAPNTQAAVQMLQLMKLHAFFLASPSLSSSNPSFSSPSSVVVLEKGDEEGREGEEGKS---RSDEMLMHISAEGFGKAKHLREILRTAKAEAHQVLFFDDQMGNLQDARKLGCCAQVVTSTEGLSWTALESGLRVYREQWRARRMMAKHFVKK 388
            PP +  +S   H RL  LLA+LSS  +  F                           DLDYTLWKGN+SDQ                                                V+ ALH      LAIASRAP++ AAV+ML+LM+LHAFF     LS S+P            +G +E  E +E +    +  + L+ I+ +G+GK KHLR+ILR   A+ H VLFFDDQ GNL+DAR+LGCCAQ V+  +GLSW +LE GLR+YRE+ RAR +MAKHFVKK
Sbjct:  113 PPFISPTSDSAHQRLRVLLAALSSPCNHPFPSSXXXXXXXXXXXXXXXXXXXXXXXXDLDYTLWKGNVSDQ------------------------------------------------VITALH--GVTRLAIASRAPDSMAAVKMLKLMELHAFFRL--PLSQSSPPRG---------QGADEKTETQEERGIGPQEPQELIAIANDGWGKTKHLRDILRWTGAQPHDVLFFDDQKGNLEDARRLGCCAQSVSCADGLSWASLEKGLRLYREKGRARSIMAKHFVKK 340
The following BLAST results are available for this feature:
BLAST of NO07G04150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26956.14.400e-3639.79had-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04150.1NO07G04150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581437gene_2762Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04150.1NO07G04150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04150 ID=NO07G04150|Name=NO07G04150|organism=Nannochloropsis oceanica|type=gene|length=1931bp
GCTCACGTGCTTGCTTACGGTGTTGCTTGTCAACCTCCCCGCTCTTTCTT
CCTTTCTTCACAATCAGACGCAGATCCCCCACTTCCTACGCACACAGGGC
CGGCAGAGAGCATGGAAGAACCATTACAACAAGGAGACCCACAGCGGCGG
AAGCATATCACAAAACGGCCCGCGGAAGGGCCGTTTTGCGGGGATAGGCC
TGCCTCCTGTACCTACTCTAATTATCCGCAATTGCAGCCCCAACAGCATC
CGCAGCAGCATGAGAGGGATGACGAGGAAGAGGAACAGCGTAAGCGGGTC
CGTGGCAGTGCTGCTATTGGTACTCTCACAACGAGCGGCAGCACAAGCAT
CCTCATAGTCCTCGACAGTGACGAGGAGGTGGCGGACGAGGAGCGTCTAG
GGGAAGAGAGGATAGCACGAACGCAATCGGCAACAACAAATAATGCACCA
GTTTCACCGTTGCTGCCGATACCACCCTGTCTACCCAGATCTTCTCATTG
CCATCACCCCCGTCTTCACGCCCTCCTTGCCTCCCTTTCCTCCTCCTCAT
CCACCTCTTTCGAACTCCCTTCCCTCATCATCGTCGACTTGGACTACACT
CTTTGGAAAGGCAACATTTCGGATCAACTTCCTCCCTTTGCCGCAACCAA
CCATCCCGACCACGTGCACGTTGGCGGCGTCTTCAGTAGTGGCGGTTGGG
GAGGAGGGCGAGGTGGAGGAGGAGGAAGAGGTGGGCCGACCCTCTTTCGT
TTGTTCCCGGAAACGCGCGAGgtaggtcttgtctcccgatgttcgtgtct
ggggtcctcttactttttatctcttcccccttcctcctcttaatatcttt
cttggtccgttttccctgcttccccttccctcctcccatttccttagGTT
CTCGGTGCTCTTCACCGCACTAGAACTGTCACCCTAGCCATTGCCTCCCG
CGCGCCCAACACCCAGGCAGCCGTCCAAATGCTGCAATTAATGAAACTGC
ATGCTTTCTTCCTCGCTTCTCCCTCACTCTCCTCCTCCAACCCCTCTTTC
TCTTCCCCCTCCTCCGTCGTGGTGTTGGAAAAGGGGGACGAGGAAGGAAG
GGAGGGAGAAGAAGGCAAAAGCAGAAGCGACGAGATGCTCATGCATATTT
CCGCCGAGGGCTTTGGCAAGGCGAAGCACCTTCGGGAGATTCTGAGgtat
ggcacccagagacaagtcggccttactcccttctcttatcgaagcctctt
cgacccttccgtctcatcccactcatttttttttaaccctcacaaaacag
GACCGCCAAAGCAGAGGCGCACCAAGTCTTGTTTTTCGACGACCAAATGG
GTAATCTGCAAGgtccgtagtggcgcttgtctttcttttcactccatgct
gacatacttaacgtgactttccgatgtatgtatgtttttgtccctccccc
tcattcaacgcctcattcgctgcctctttgtcacagATGCCCGCAAGCTG
GGTTGTTGTGCTCAAGTTGTCACATCGACTGAGGGCCTGTCGTGGACTGC
CCTAGAGAGTGGCTTGCGTGTGTACAGAGAGCAATGGCGGGCTCGGAGGA
TGATGGCAAAGCATTTTGTGAAGAAGTAGGTGGAAAGAGGAGGAAGCGAT
GGACAAAGATATGTAAAGAAACAATATATGGGGCAAACAGAACGTAAAAG
AATCAATATGTACCCCTCGATGCTGCATTTCTTTTATTAATCAATATGCA
GGGTTGAGATAAAAGCGATGAAATGGGCGTTGTTTGCAGACCAAAACACG
CTCTCGCTCAGTTCATGCCCTTTATGCGGCCTATTTGAGGACATGCAGTA
AGTAATGATGCACTAAACAAGCATTGACGCAATGCCAAAGATCTATGAGG
TATATTGTGACATTTGCGACGCATCCTTTCA
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protein sequence of NO07G04150.1

>NO07G04150.1-protein ID=NO07G04150.1-protein|Name=NO07G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MEEPLQQGDPQRRKHITKRPAEGPFCGDRPASCTYSNYPQLQPQQHPQQH
ERDDEEEEQRKRVRGSAAIGTLTTSGSTSILIVLDSDEEVADEERLGEER
IARTQSATTNNAPVSPLLPIPPCLPRSSHCHHPRLHALLASLSSSSSTSF
ELPSLIIVDLDYTLWKGNISDQLPPFAATNHPDHVHVGGVFSSGGWGGGR
GGGGGRGGPTLFRLFPETREVLGALHRTRTVTLAIASRAPNTQAAVQMLQ
LMKLHAFFLASPSLSSSNPSFSSPSSVVVLEKGDEEGREGEEGKSRSDEM
LMHISAEGFGKAKHLREILRTAKAEAHQVLFFDDQMGNLQDARKLGCCAQ
VVTSTEGLSWTALESGLRVYREQWRARRMMAKHFVKK*
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Synonyms
Publications