NO07G04140, NO07G04140 (gene) Nannochloropsis oceanica

Overview
NameNO07G04140
Unique NameNO07G04140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length784
Alignment locationchr7:1153644..1154427 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1153644..1154427 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0038023signaling receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO07G04140 vs. NCBI_GenBank
Match: EWM26954.1 (hypothetical protein Naga_100304g5 [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 2.000e-31
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 0 
Query:    3 KTNQVLGVKYGEKGGVISEVLLRQTGAVTEPIAPRRRLQDGDSDSTPLTEEDIFNVNILTWTTVGLILVLLLSLCLLYGADSGPRDSLLYAKFLADTSGGKMD 106
            +T++ L  +Y  +GG+IS+VLLRQTGA+ E   PRRRLQ    D+TP+TEEDIFNVNI+TWTTVGLIL LL+SLCLL GA SGP+DSLLYAKF ADTSGGK D
Sbjct:  282 QTSRALERRYAAEGGLISQVLLRQTGALVEVARPRRRLQPTGEDATPVTEEDIFNVNIITWTTVGLILALLMSLCLLAGAGSGPKDSLLYAKFAADTSGGKTD 384
The following BLAST results are available for this feature:
BLAST of NO07G04140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26954.12.000e-3169.90hypothetical protein Naga_100304g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04140.1NO07G04140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04140.1NO07G04140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04140 ID=NO07G04140|Name=NO07G04140|organism=Nannochloropsis oceanica|type=gene|length=784bp
ATGGCCAAGACCAATCAGGTGTTGGGGGTGAAATACGGGGAGAAAGGTGG
CGTGATCTCTGAAGTCTTGTTGAGGCAGACGgtgaggaagggaaggggaa
atgggagggaatgataatgctcactttaacatgcaacaacgtggaaaggt
agattgatggacaggacagatggcagatggatagatagatagatagatag
atgtgtaatctactctctctctacttctctttggatgcactcatatctct
gactgcctctctatctcattttatacagatgcattcatgtaactgtctgc
atccatctctcaatctctatctctatctctatctctatcttttctcgtgt
atctgtctgcatttctcaccgtatataattcattgaaaaccacagGGAGC
CGTAACAGAGCCGATTGCCCCGAGAAGACGCCTGCAGGACGGGGACTCTG
ATAGCACACCCCTCACCGAGGAGGACATTTTTAATgtacgtccattggct
taactccccttcggagaaggggaaggaagggtgaagacaccttctctgtt
tgcatgggtcgtggagtcttacccgtgaacgttttgagcagtctttgtct
tacccctcctcccttccctctctttctccctccctagGTAAACATCCTGA
CCTGGACCACCGTGGGCCTCATTCTCGTCCTGCTGCTGTCGCTCTGTCTC
CTTTATGGTGCGGATTCGGGCCCCAGGGATTCCTTGTTGTACGCGAAGTT
CTTGGCAGACACCTCGGGAGGGAAGATGGATTAA
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protein sequence of NO07G04140.1

>NO07G04140.1-protein ID=NO07G04140.1-protein|Name=NO07G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MAKTNQVLGVKYGEKGGVISEVLLRQTGAVTEPIAPRRRLQDGDSDSTPL
TEEDIFNVNILTWTTVGLILVLLLSLCLLYGADSGPRDSLLYAKFLADTS
GGKMD*
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Synonyms
Publications