NO07G04080, NO07G04080 (gene) Nannochloropsis oceanica

Overview
NameNO07G04080
Unique NameNO07G04080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2531
Alignment locationchr7:1135084..1137614 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1135084..1137614 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G04080 vs. NCBI_GenBank
Match: XP_005853883.1 (hypothetical protein NGA_0471900, partial [Nannochloropsis gaditana CCMP526] >EKU22480.1 hypothetical protein NGA_0471900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 188.3 bits (477), Expect = 5.700e-44
Identity = 90/135 (66.67%), Postives = 113/135 (83.70%), Query Frame = 0 
Query:   36 VQFPTLGQGSTFSVRLHRVPAQVTITTAWIDHTKLLIAAPPNAPALDVQVLNEGEGGEGEATGRGRV--LSISDAKMLLPPDALKYLDGHYHIHATIPEKVHTLQVHLSQSPGTITLTQKIEGESIDLLSKEGDV 169
            V+FP LGQGS+FSVRLHRVPAQ++IT+ WIDHT+L I  PP+APALDVQVL  G G +G A     +  LS+SDAK+LLPPDALKY++G YH+H T+PEK+H+LQ HLSQSPGTI+++ K+EGE ID+LSK+GDV
Sbjct:    2 VKFPNLGQGSSFSVRLHRVPAQISITSGWIDHTELRIDTPPHAPALDVQVL-RGNGAKGTADEESTLSTLSVSDAKILLPPDALKYMEGKYHVHITVPEKLHSLQAHLSQSPGTISVSTKVEGEGIDILSKQGDV 135
[Close]
BLAST of NO07G04080 vs. NCBI_GenBank
Match: XP_005853884.1 (hypothetical protein NGA_0472000, partial [Nannochloropsis gaditana CCMP526] >EKU22481.1 hypothetical protein NGA_0472000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 115.5 bits (288), Expect = 4.700e-22
Identity = 67/133 (50.38%), Postives = 86/133 (64.66%), Query Frame = 0 
Query:  376 EGGREAVQGLEVGRRSEGLVEGRLTGKAPEPSXXXXXXXXXXXXXXXXXXXXXXXRVGVGKIDLKGAQDQALKAFFHESGGEEGREGGKEVASLLVRTQGEGGTLQVKTLSWMDAIKRDFGLEHIDYSPQGQR 509
            E  +E+V GL+V  + +G V+G LTG+ P PS                        VG+GKIDLKGAQ+QALK+ F     E+  + G++ AS+LVRTQGEGG LQ+KTLSWMDAIKRDFG+EH+DY+P G R
Sbjct:    5 EERKESVVGLDVLEQGDGYVQGLLTGQPPTPSRQKLGGQTNSGQAG----------VGIGKIDLKGAQNQALKS-FSRVNIEKPEDTGRK-ASILVRTQGEGGRLQIKTLSWMDAIKRDFGMEHVDYTPGGGR 125
The following BLAST results are available for this feature:
BLAST of NO07G04080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853883.15.700e-4466.67hypothetical protein NGA_0471900, partial [Nannoch... [more]
XP_005853884.14.700e-2250.38hypothetical protein NGA_0472000, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04080.1NO07G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|338267gene_2754Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04080.1NO07G04080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04080 ID=NO07G04080|Name=NO07G04080|organism=Nannochloropsis oceanica|type=gene|length=2531bp
ATGCAGCTCCTTCTCCTCAAGCGCCAGCTGACCACGCGACAGCTCCTCCT
CCTCTCCCGCCGTGCTTTGTCCGACTCCCCTTCCCCTCCGCCTCCGCCTG
TCGCAGgtgggtacgtggcgtttatcgtcaccttccccaatggcacttgt
cgcacccttgtaacacgtcacgtgctccctgtccctgttctcccccctgt
ctaaccctttccaattgaccgcaagatcaaaccctgcatttcagtcctgt
gctcgtgtgtgtgtggcctctcacccatcccaccaacctcccccctcccc
cctcttctctcccacaccagTTCAATTTCCCACGCTAGGCCAAGGCAGCA
CCTTCAGTGTGCGCCTGCACCGGGTTCCTGCCCAAGTCACTATCACTACT
GCGTGGATTGATCATACAAAGCTGCTGATTGCTGCACCACCTAACGCCCC
AGCACTGGACGTGCAGGTGCTCAATGAAGGCGAAGGCGGCGAGGGAGAGG
CTACTGGCCGGGGACGCGTCCTGTCCATTTCAGACGCCAAAATGCTCTTG
CCGCCCGACGCACTGAAGTACCTAGACGgtatgtatgccttgcatctctg
gtcccgcttcacagttgcaacccctacccatacatccttcctccatcctc
cctccctcccctccctcctcccctctagGCCACTACCACATTCACGCCAC
CATTCCAGAAAAGGTGCATACGTTGCAGGTCCATCTCTCACAATCTCCGG
GTACTATCACACTCACCCAGAAGATTGAAGGGGAGAGCATCGACTTGCTG
AGTAAAGAGGGCGATGTGCTGTTAAACAAGGCTAGGGgtgagggcggagg
gagaaagggatggagggatggagggagggaggagcaggaaaaatgatgtt
tgtcaatagatcaggggacgatctaaaaagacgctcattaccactccact
aataacatgataaatctaacaaacaaaaacctctgcaaataatagGGGTT
AAACTCGATGTGTCCGCCGAGAAAGGCACGGTCAAGGTGGCCAAATGGGT
GGAGGGTGATCTGAGTGTTCGGGCCGGGAGGTTAAGGGCCCGGATGATCA
AAGGCCATCGCGTGCGCTTGCAGGTTCGAGGAGGAAGGGAAAGAGGGAGG
GAAGGAGGGCCGCCCTTGGTTGTCGAAGCCTTGTACGGGCGGCAGGCGTC
GGTGCTCTGCACCGCCCCCCCCCCTCCCTCCCTCCCTCCCACCTTTTCGT
TGGCGGGGCACGAAAGAAAGGAGGAAAGTGGGAAAAAAGGAGCGTCAGCC
CTTACACTGGATATTAATCGCTCTCACGGCGCTTTGAAAGTGGTGGCAAC
GGGGGGAGGCGTCCGGTTGGGAGGGGTCAACGGCTCAGCGATCGTTCAGA
CTGGAGGAGGGGAAGGGGGAGGGGCAGGACGTGAGGGAGGAATCGACGTC
CGGTTCGAAGCGCTGGAGCCGGGCTGCATGAACGTGCTGGCGACGCAGGG
AGGGCCCATCAACCTACTGGTGgtgcgttggagaagcttttacacttcct
ccccccctcccccctcccctctcatctctattagctaggccagcttacct
ccttctccctctcttccttctcccttcccttttttctcttagGCTCCCGA
GGTCAGAGCCACCTTGAGAGTGGAGGGCAAGACAGCAGTTTCATCGTTCT
TGGCTGCAGTGGAGGGGGAGGGAGGGAGGGAGGCTGTCCAAGGCCTGGAG
GTTGGGAGGAGAAGCGAGGGGTTGGTGGAGGGCCGGCTTACTGgtgcgtc
gctctaaaagggagggagggggagagggagggggggagggagggagggag
ggaggaaaagcggagaggccgatgctccctggcttcaggggggcaattga
aaaataggttgtttgatcttctttttctaacgtggtgttcttacagGGAA
AGCCCCCGAACCCTCCCGCAAGAGGCAGCATCAGCAGCAGCAACAGCAGC
AGGAGGAGGAGGGGAAGGAGGGGGGCAGGCATGGACGAGTTGGTGTTGGG
AAGATCGACCTGAAGGGCGCACAAGACCAAGCTCTCAAGGCCTTCTTCCA
CGAGAGCGGGGGGGAGGAGGGGAGGGAGGGTGGAAAGGAGGTAGCGTCAC
TTTTGGTGCGGACACAGGGGGAGGGAGGGACGTTGCAAGTCAAgtacgta
taaattgaagtgaagataggcacggaacagggaggtggggagggaggagg
aggaggagggaggtttgagatagcgagtgtgcttgttcacaccagacgtt
ggcctggcctttttcaggcggcgactttcagattctaccaatacctactt
tctgtagtattgagatatatttgtcatctcttgtcatcttctttcgcttc
ctctctcccttcctccctccttccctaacaatcacagGACGCTGAGCTGG
ATGGACGCCATCAAGCGGGATTTTGGCTTGGAGCACATCGACTACTCGCC
TCAAGGCCAACGGGTGGGGAATAGCAAGTGA
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protein sequence of NO07G04080.1

>NO07G04080.1-protein ID=NO07G04080.1-protein|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MQLLLLKRQLTTRQLLLLSRRALSDSPSPPPPPVAVQFPTLGQGSTFSVR
LHRVPAQVTITTAWIDHTKLLIAAPPNAPALDVQVLNEGEGGEGEATGRG
RVLSISDAKMLLPPDALKYLDGHYHIHATIPEKVHTLQVHLSQSPGTITL
TQKIEGESIDLLSKEGDVLLNKARGVKLDVSAEKGTVKVAKWVEGDLSVR
AGRLRARMIKGHRVRLQVRGGRERGREGGPPLVVEALYGRQASVLCTAPP
PPSLPPTFSLAGHERKEESGKKGASALTLDINRSHGALKVVATGGGVRLG
GVNGSAIVQTGGGEGGGAGREGGIDVRFEALEPGCMNVLATQGGPINLLV
APEVRATLRVEGKTAVSSFLAAVEGEGGREAVQGLEVGRRSEGLVEGRLT
GKAPEPSRKRQHQQQQQQQEEEGKEGGRHGRVGVGKIDLKGAQDQALKAF
FHESGGEEGREGGKEVASLLVRTQGEGGTLQVKTLSWMDAIKRDFGLEHI
DYSPQGQRVGNSK*
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Synonyms
Publications