NO07G04000, NO07G04000 (gene) Nannochloropsis oceanica

Overview
NameNO07G04000
Unique NameNO07G04000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr7:1113218..1114717 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1113218..1114717 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006786Pinin_SDK_MemA
Homology
The following BLAST results are available for this feature:
BLAST of NO07G04000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000444NSK000444Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04000.1NO07G04000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669280gene_2745Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04000.1NO07G04000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04000 ID=NO07G04000|Name=NO07G04000|organism=Nannochloropsis oceanica|type=gene|length=1500bp
ATGTCTAGCAGCAGCAGTACCGTAGCCTCCCTGCAAGCCAAGCTGGGCGA
AATCCAAAAAGAGCGTCAAATTCTTGAGAAGAAGCTGAGCCATGCCCGCG
GCGGCAGTGGTGGCAGTGGTGGCGGGTGGGGTCGCAGTAATCGACAAGTC
ATCCTAGATGAAGCAGGAGCAGGGGGAGGAGGAGGAGGAGGAGGAAGCCG
CAGAGGAGGAGCGAGCGACGGTACCATGTACCCCAGGCACGGGCGTCCGA
CCTCTCCTCGGCGGGACGGGGGATTGCTTTCTCGCGTGGGTGAGAAGCGG
GGAAGATTGGCCTCGGCGGTGAGTGTACCGGGAGGGGAGGAGAAGGGGGA
GATCGAGGAAGGGGAAGTGCCCGATCAGGAGGGAGGGAGGGCTCGCAAGA
CTCTGCGACGTGATGGAGAAAACGGAGGAAGGGGAGGAAGAGGGAGGGGC
CCAGCTGTGGCAACGGTGGTGGTGGATCCTGCACGACAGGCAGCGCTGAA
GGCGATGAGGGACGAGGCATACGAGGCGGCAGAATTAAGGGCAGAAGAGA
GAGGGGAAATGAAGAATATCTACCAGAAGGAAGAGGTGAAGAAGAGGGAC
AGACGGATGTTTGGGGTGTTGATGGGGCATTTGGGTGCGGCGCAGGCGAG
GCTGAAGAAGGATGGGGAGGGAAGTGGGATTCTGCGGAAGCAACGAGGGG
TGATGGAGGTGGTGGTGGGTAAGGATAGGGAGGAGGCGGAGAGGAGGAAG
GTGAAGGAGGAAGAGGAGAGGGAGAAGAGGAGGAGGGGAGAGGAGAGGAG
GAGGGAGTGGTTGGCGGTGCGACAGAAGAAGGTGGAGGGAGAGCTAGACT
GCGCGAGGTATAGGGAATATTGGGGTGCATTTAAGGGCTTTATTTTGACG
CGAGTGGAGCCCAAGTTGTTTTGGTTGCCGGCACGGATGAATGAGGCTAT
GACGGAGAAATTGGAGGAGAGTCGGAGGGAGGGGGAGGAGAAGGTAAGGA
GGAGGGAGGAGGAGAGGGCGGAAGAGGGGAGGAAGGCGGAGTTGGCTTTC
ACGGAGAAGTGGGGACCGGCGGGGAGAGGGGAGGAGGAGGAGGACGGGGG
TGGAGGAAAGGAGAGGGAGGATGCCACAGTGCTTTCTGCTGGGGTGGAAG
ACGAGTCTTCGTCAGTTGGGAATGGGGATGGGAATGGGGATGGGGGGGCA
GGGGAGGAGGGAGAGGGTTATGGTAAGGGAGAGGTTGTGGTGGAGGAAAA
GAAGAAGGGGGAAAGGGGAGAGGAGGAGAAAGATGAGATGGTGGATGAAA
AGAGGAGGAAGGAGAGGGATGAGGAGGAGGGGGAGGAGGAGGAGGAGGGG
GGGTCACCTAATGACGCTATGGTGAGGCGGTCAGGTGAAGAGGAGGAGGA
GGAAGAGCAGGAGGAGAAGAATAATGACAGCGACGAAGGCAAGAAGAAAA
ATGAAGAGACTCGTGAAAGGAGGGGGAGGAGAAGCAGCAGGAGGGAGTGA
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protein sequence of NO07G04000.1

>NO07G04000.1-protein ID=NO07G04000.1-protein|Name=NO07G04000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MSSSSSTVASLQAKLGEIQKERQILEKKLSHARGGSGGSGGGWGRSNRQV
ILDEAGAGGGGGGGGSRRGGASDGTMYPRHGRPTSPRRDGGLLSRVGEKR
GRLASAVSVPGGEEKGEIEEGEVPDQEGGRARKTLRRDGENGGRGGRGRG
PAVATVVVDPARQAALKAMRDEAYEAAELRAEERGEMKNIYQKEEVKKRD
RRMFGVLMGHLGAAQARLKKDGEGSGILRKQRGVMEVVVGKDREEAERRK
VKEEEEREKRRRGEERRREWLAVRQKKVEGELDCARYREYWGAFKGFILT
RVEPKLFWLPARMNEAMTEKLEESRREGEEKVRRREEERAEEGRKAELAF
TEKWGPAGRGEEEEDGGGGKEREDATVLSAGVEDESSSVGNGDGNGDGGA
GEEGEGYGKGEVVVEEKKKGERGEEEKDEMVDEKRRKERDEEEGEEEEEG
GSPNDAMVRRSGEEEEEEEQEEKNNDSDEGKKKNEETRERRGRRSSRRE*
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Synonyms
Publications