NO07G03910, NO07G03910 (gene) Nannochloropsis oceanica

Overview
NameNO07G03910
Unique NameNO07G03910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1163
Alignment locationchr7:1090413..1091575 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1090413..1091575 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G03910 vs. NCBI_GenBank
Match: EWM26971.1 (hypothetical protein Naga_102195g1 [Nannochloropsis gaditana])

HSP 1 Score: 104.8 bits (260), Expect = 5.700e-19
Identity = 75/185 (40.54%), Postives = 97/185 (52.43%), Query Frame = 0 
Query:  172 GSLHARRGLSAAAGW------PYEGGREGTNERGLVHTHAILPADAMVFVRSPLAFLVVS-KGE--GGKEGSVSLSLFRGFPLDVSSAATAAAVTVRVEVPEVLRGVIERLACMAPPSCSSSSNSSLNIRTLMDLVTNS-------XXXXXXXXXXXXXXXXXXXXLVRKLVGVLTYHGFLRPWK 341
            GS  ARRGLSAAAGW        EGGREG  E         L   A+VFVRSPLA LV+S +GE  G KEG V L+L RGFPL  SSAA  A+  + ++VP  +   ++ L  + P   +  S S  +++ L++ V                              LV+KLVG+LTYHG+LRPW+
Sbjct:   37 GSSQARRGLSAAAGWRGREVVEGEGGREGGKE-----GRVCLSPKALVFVRSPLAVLVMSMEGERAGEKEGWVHLTLHRGFPLSASSAAPEASARILIDVPGRIEEAVKMLVSLPP---AGGSASPCSVQALLEAVMGKEGRVEKLGGERPGREGGRGGGREEVEVLVKKLVGILTYHGYLRPWR 213
The following BLAST results are available for this feature:
BLAST of NO07G03910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26971.15.700e-1940.54hypothetical protein Naga_102195g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000456NSK000456Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03910.1NO07G03910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_102195g1gene3575Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03910.1NO07G03910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03910 ID=NO07G03910|Name=NO07G03910|organism=Nannochloropsis oceanica|type=gene|length=1163bp
ATGTACCTCCCGGCGGGCTGGTGGCACGCTGTGACGGCCTTGTCTGACGA
GGAGGACGGGGAGGAGGTTGAAGAAGAAGAAGGAGAAGGAGGAGAAGAAG
AGGAGGAGGAGGATTGTTTGTCGGTGAACATGAGTCTCGATCCGTGTCGA
TGGCGTGATTTAATGACTGGGAGCATGGGCCCGCTCTTGTGGGGGGGAGG
AGCAGGAGGGGAGGATCAGGGGTGGAGGGAGAGAGCGCAAGTGgttggta
ttgagggagggagggaggggggggggaggagaatgtggtgacggcgacga
ggaagagggtggagcggttgttggagggatggagggagcggctggcgaag
GTGGCGGTGGAGGACCTGTTGCCTTTGTCGTCATTTTTTGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTCGGACGGCGGAAGA
GGAAGGGGAAGGGGAAAGGAGGAAATGAGGAAGGGTATGGGAAGCATGTC
CGGGTCGTGGTGTGCGTGGAGGCGGAGGACAAGGAGAAGGGTGAAAAGGA
GAAAAAAGAGGGGCACGGAGAGGAGGAGGAGGAAAGGGAGGGATGGCATG
ACCTCAGGGCGAGGCAACGAGGCTCTCTTCATGCTCGACGGGGACTGTCG
GCCGCGGCAGGATGGCCCTATGAAGGAGGGAGGGAAGGAACGAACGAGAG
AGGGTTAGTTCATACCCACGCCATCTTGCCAGCTGACGCCATGGTGTTTG
TCCGAAGTCCTTTGGCGTTCTTAGTGGTGTCGAAAGGTGAGGGAGGGAAG
GAGGGATCTGTGAGCCTATCGTTATTTCGGGGCTTCCCTCTCGATGTGTC
CTCGGCGGCAACAGCGGCTGCAGTGACGGTGAGAGTAGAGGTACCCGAGG
TGCTGCGGGGAGTGATTGAGAGACTGGCCTGCATGGCCCCTCCTTCATGC
AGCAGCAGCAGCAACAGCAGCCTAAATATCAGGACGTTGATGGATCTAGT
GACGAACAGCAAGAAAAAAGGGAGGAAATGCAAGAAGGAAGGGGAGGAGG
AGGAGGAGGAGGTAGAGATATTGGTAAGAAAGCTGGTGGGTGTTTTGACG
TACCACGGATTTTTGCGGCCATGGAAAGCAGAGGGAGCAAGGCAGAAGGG
AGTCTTACTATGA
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protein sequence of NO07G03910.1

>NO07G03910.1-protein ID=NO07G03910.1-protein|Name=NO07G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MYLPAGWWHAVTALSDEEDGEEVEEEEGEGGEEEEEEDCLSVNMSLDPCR
WRDLMTGSMGPLLWGGGAGGEDQGWRERAQVVAVEDLLPLSSFFEEEEEE
EEEEEEEEEVGRRKRKGKGKGGNEEGYGKHVRVVVCVEAEDKEKGEKEKK
EGHGEEEEEREGWHDLRARQRGSLHARRGLSAAAGWPYEGGREGTNERGL
VHTHAILPADAMVFVRSPLAFLVVSKGEGGKEGSVSLSLFRGFPLDVSSA
ATAAAVTVRVEVPEVLRGVIERLACMAPPSCSSSSNSSLNIRTLMDLVTN
SKKKGRKCKKEGEEEEEEVEILVRKLVGVLTYHGFLRPWKAEGARQKGVL
L*
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Synonyms
Publications